Wall clock time and date at job start Tue Mar 31 2020 00:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47200 * 1 3 3 C 1.17400 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 72.80474 * 3 2 1 5 5 C 1.53002 * 109.46924 * 243.15736 * 4 3 2 6 6 C 1.53000 * 109.47091 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47260 * 180.02562 * 6 5 4 8 8 O 1.21288 * 119.99891 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00110 * 180.02562 * 7 6 5 10 10 C 1.48207 * 119.96907 * 180.02562 * 9 7 6 11 11 C 1.47136 * 110.34354 * 102.47137 * 10 9 7 12 12 C 1.53789 * 111.84457 * 58.29499 * 11 10 9 13 13 N 1.43465 * 107.95825 * 281.67085 * 12 11 10 14 14 C 1.36944 * 118.93846 * 273.60773 * 13 12 11 15 15 H 1.08000 * 119.99821 * 24.61982 * 14 13 12 16 16 C 1.38805 * 120.00011 * 204.62172 * 14 13 12 17 17 N 1.31621 * 119.99891 * 203.00951 * 16 14 13 18 18 Si 1.86805 * 120.00190 * 23.00689 * 16 14 13 19 19 H 1.48500 * 109.47330 * 265.74629 * 18 16 14 20 20 H 1.48496 * 109.47260 * 145.74620 * 18 16 14 21 21 H 1.48498 * 109.47188 * 25.74356 * 18 16 14 22 22 C 1.48859 * 122.12251 * 93.88897 * 13 12 11 23 23 C 1.43619 * 119.96666 * 359.97438 * 9 7 6 24 24 H 1.08999 * 109.46927 * 224.03463 * 1 2 3 25 25 H 1.09002 * 109.47404 * 344.03174 * 1 2 3 26 26 H 1.09001 * 109.47211 * 104.04219 * 1 2 3 27 27 H 1.09002 * 109.46600 * 123.15964 * 4 3 2 28 28 H 1.08994 * 109.47231 * 3.16207 * 4 3 2 29 29 H 1.09001 * 109.46821 * 60.00048 * 5 4 3 30 30 H 1.09003 * 109.47418 * 300.00494 * 5 4 3 31 31 H 1.09002 * 109.46647 * 60.00096 * 6 5 4 32 32 H 1.08994 * 109.47016 * 300.00443 * 6 5 4 33 33 H 1.08997 * 109.32692 * 342.19653 * 10 9 7 34 34 H 1.09005 * 109.18498 * 222.64715 * 10 9 7 35 35 H 1.09001 * 109.00324 * 297.68618 * 11 10 9 36 36 H 1.09000 * 108.94712 * 178.86542 * 11 10 9 37 37 H 1.08997 * 109.76815 * 162.05216 * 12 11 10 38 38 H 1.09006 * 109.80641 * 41.30596 * 12 11 10 39 39 H 0.96998 * 119.99910 * 5.15680 * 17 16 14 40 40 H 1.08995 * 109.48053 * 80.34635 * 22 13 12 41 41 H 1.09000 * 109.48016 * 200.38205 * 22 13 12 42 42 H 1.09003 * 108.87915 * 31.46748 * 23 9 7 43 43 H 1.09004 * 108.87092 * 150.00858 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 -0.0006 5 6 4.6283 0.6525 1.2863 6 6 6.1583 0.6536 1.2853 7 6 6.6610 1.2947 2.5531 8 8 5.8730 1.7104 3.3762 9 7 7.9861 1.4072 2.7719 10 6 8.4797 2.0374 4.0193 11 6 8.9328 1.0079 4.9678 12 6 10.0460 0.1304 4.3713 13 7 9.4342 -0.8210 3.4888 14 6 8.9659 -1.9992 4.0064 15 1 8.6877 -2.0585 5.0483 16 6 8.8490 -3.1172 3.1921 17 7 8.0140 -4.0821 3.5149 18 14 9.8766 -3.2524 1.6380 19 1 9.0940 -2.7472 0.4815 20 1 10.2399 -4.6735 1.4068 21 1 11.1128 -2.4438 1.7901 22 6 9.2975 -0.5714 2.0277 23 6 8.9185 0.9153 1.7966 24 1 -0.3633 -0.7388 0.7143 25 1 -0.3634 0.9880 0.2827 26 1 -0.3634 -0.2493 -0.9970 27 1 4.4807 0.5632 -0.8611 28 1 4.4817 -1.0249 -0.0575 29 1 4.2655 0.0903 2.1467 30 1 4.2646 1.6785 1.3431 31 1 6.5207 1.2161 0.4249 32 1 6.5223 -0.3722 1.2283 33 1 7.6760 2.6173 4.4729 34 1 9.3120 2.6997 3.7809 35 1 8.0868 0.3749 5.2355 36 1 9.3090 1.4960 5.8669 37 1 10.5712 -0.3928 5.1704 38 1 10.7475 0.7516 3.8143 39 1 7.4266 -3.9794 4.2800 40 1 10.2429 -0.7905 1.5315 41 1 8.5159 -1.2132 1.6209 42 1 8.4777 1.0165 0.8048 43 1 9.8263 1.5171 1.8417 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196847252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:05 Heat of formation + Delta-G solvation = 4.254696 kcal Electronic energy + Delta-G solvation = -22358.880883 eV Core-core repulsion = 19211.854222 eV Total energy + Delta-G solvation = -3147.026661 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.29831 -38.85551 -36.71899 -36.02100 -34.67533 -33.98476 -33.33218 -30.57428 -29.25445 -27.88788 -27.02279 -24.91069 -24.23598 -22.53309 -21.55584 -20.02014 -19.33876 -18.18633 -17.61781 -17.23010 -16.96025 -16.60530 -16.10392 -15.67925 -15.44030 -15.05173 -14.83570 -14.62078 -14.48537 -14.36589 -14.21301 -13.98536 -13.74701 -13.35931 -13.30515 -13.16346 -12.87467 -12.57122 -12.44568 -12.02841 -11.91868 -11.90537 -11.57643 -11.45934 -11.27228 -10.85855 -10.67094 -10.61170 -10.58486 -9.58403 -8.92782 -8.56574 -5.46707 1.44405 1.59379 1.63775 1.70114 1.74929 1.77588 2.18861 2.60832 3.08373 3.33277 3.44538 3.63666 3.98027 4.00404 4.06201 4.10642 4.18463 4.33931 4.40749 4.50571 4.53150 4.61979 4.64149 4.71118 4.73998 4.78071 4.81442 4.83392 4.85219 4.90960 4.96123 5.00667 5.11655 5.15222 5.18277 5.24003 5.40725 5.72673 5.80029 6.26294 6.51431 6.69859 6.95268 7.23174 7.72315 8.05025 8.85820 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014737 B = 0.005452 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.508449 B = 5134.373092 C = 6217.025264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 C -0.214 4.214 3 C -0.218 4.218 4 C -0.003 4.003 5 C -0.087 4.087 6 C -0.135 4.135 7 C 0.508 3.492 8 O -0.598 6.598 9 N -0.590 5.590 10 C 0.127 3.873 11 C -0.156 4.156 12 C 0.159 3.841 13 N -0.612 5.612 14 C -0.332 4.332 15 H 0.013 0.987 16 C -0.071 4.071 17 N -0.958 5.958 18 Si 1.102 2.898 19 H -0.259 1.259 20 H -0.318 1.318 21 H -0.256 1.256 22 C 0.089 3.911 23 C 0.094 3.906 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.117 0.883 28 H 0.089 0.911 29 H 0.032 0.968 30 H 0.066 0.934 31 H 0.139 0.861 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.108 0.892 35 H 0.009 0.991 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.079 0.921 39 H 0.241 0.759 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.112 0.888 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 14.455 -11.368 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.214 4.214 3 C -0.218 4.218 4 C -0.039 4.039 5 C -0.125 4.125 6 C -0.174 4.174 7 C 0.298 3.702 8 O -0.480 6.480 9 N -0.320 5.320 10 C 0.006 3.994 11 C -0.197 4.197 12 C 0.032 3.968 13 N -0.336 5.336 14 C -0.462 4.462 15 H 0.031 0.969 16 C -0.264 4.264 17 N -0.600 5.600 18 Si 0.927 3.073 19 H -0.184 1.184 20 H -0.247 1.247 21 H -0.181 1.181 22 C -0.036 4.036 23 C -0.031 4.031 24 H 0.105 0.895 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.107 0.893 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.028 0.972 36 H 0.101 0.899 37 H 0.051 0.949 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.739 13.746 -12.174 18.444 hybrid contribution -0.859 0.067 2.522 2.665 sum -2.599 13.812 -9.652 17.049 Atomic orbital electron populations 1.19073 0.82263 1.04071 1.04301 1.23454 0.95459 1.01469 1.01030 1.23012 0.94821 1.01907 1.02078 1.18753 0.83710 1.02779 0.98696 1.21114 0.93624 1.01085 0.96707 1.21745 0.96578 1.02786 0.96275 1.21235 0.82272 0.77717 0.88991 1.90611 1.56309 1.51801 1.49248 1.47556 1.05405 1.58101 1.20981 1.20645 0.99696 0.94571 0.84515 1.21677 0.99801 0.98418 0.99755 1.20484 0.92755 0.90663 0.92933 1.44012 1.68753 1.16935 1.03881 1.20015 1.40237 0.90546 0.95405 0.96932 1.27528 1.00376 0.91698 1.06802 1.70983 1.22644 1.37733 1.28646 0.83449 0.76384 0.74411 0.73088 1.18441 1.24709 1.18115 1.22906 0.99648 0.97079 0.83979 1.22014 0.94595 0.93984 0.92515 0.89490 0.88914 0.88382 0.86461 0.89323 0.94854 0.91531 0.84365 0.89133 0.91678 0.87424 0.97159 0.89939 0.94892 0.90241 0.95015 0.92098 0.93205 0.86974 0.87547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.70 10.32 70.18 0.72 0.03 16 2 C -0.21 -5.71 14.13 31.13 0.44 -5.27 16 3 C -0.22 -6.28 13.34 31.13 0.42 -5.86 16 4 C 0.00 -0.08 5.70 28.79 0.16 0.09 16 5 C -0.09 -2.60 4.46 30.59 0.14 -2.46 16 6 C -0.13 -3.76 4.26 29.85 0.13 -3.64 16 7 C 0.51 18.21 7.67 87.66 0.67 18.88 16 8 O -0.60 -26.41 15.42 -3.05 -0.05 -26.46 16 9 N -0.59 -18.59 2.46 -830.63 -2.04 -20.63 16 10 C 0.13 3.81 5.70 84.23 0.48 4.29 16 11 C -0.16 -5.49 5.64 29.04 0.16 -5.33 16 12 C 0.16 5.84 5.63 87.21 0.49 6.33 16 13 N -0.61 -27.24 2.33 -697.52 -1.62 -28.87 16 14 C -0.33 -18.97 9.55 84.03 0.80 -18.16 16 15 H 0.01 0.84 8.06 -2.91 -0.02 0.81 16 16 C -0.07 -4.11 5.14 84.86 0.44 -3.67 16 17 N -0.96 -61.83 13.70 21.65 0.30 -61.53 16 18 Si 1.10 49.75 24.43 68.60 1.68 51.42 16 19 H -0.26 -10.11 6.75 99.48 0.67 -9.44 16 20 H -0.32 -15.19 7.11 99.48 0.71 -14.49 16 21 H -0.26 -10.24 6.41 99.48 0.64 -9.60 16 22 C 0.09 3.17 4.54 86.66 0.39 3.56 16 23 C 0.09 2.37 5.05 87.65 0.44 2.82 16 24 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.03 1.23 8.10 -2.39 -0.02 1.21 16 30 H 0.07 1.99 8.10 -2.39 -0.02 1.97 16 31 H 0.14 2.50 7.37 -2.39 -0.02 2.48 16 32 H 0.09 2.79 7.34 -2.39 -0.02 2.77 16 33 H 0.06 2.15 7.12 -2.39 -0.02 2.13 16 34 H 0.11 2.29 8.05 -2.38 -0.02 2.27 16 35 H 0.01 0.45 7.91 -2.39 -0.02 0.43 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 37 H 0.03 1.31 8.02 -2.39 -0.02 1.29 16 38 H 0.08 2.27 7.59 -2.38 -0.02 2.25 16 39 H 0.24 16.13 8.73 -92.71 -0.81 15.32 16 40 H 0.06 1.97 5.81 -2.39 -0.01 1.96 16 41 H 0.05 2.01 4.74 -2.39 -0.01 1.99 16 42 H 0.11 2.03 6.38 -2.39 -0.02 2.02 16 43 H 0.11 2.00 7.72 -2.38 -0.02 1.98 16 Total: -1.00 -81.65 339.64 4.99 -76.67 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.84 Total: 17.80 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 5.89 Total: -8.40 kcal Atomic # 7 Polarization: -107.66 SS G_CDS: -3.37 Total: -111.03 kcal Atomic # 8 Polarization: -26.41 SS G_CDS: -0.05 Total: -26.46 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 1.68 Total: 51.42 kcal Total: -81.65 4.99 -76.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196847252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.923 kcal (2) G-P(sol) polarization free energy of solvation -81.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds