Wall clock time and date at job start Tue Mar 31 2020 00:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47142 * 326.80675 * 3 2 1 5 5 C 1.53005 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47521 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47009 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63144 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.55709 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46498 * 109.44278 * 181.23594 * 12 11 10 14 14 C 1.36936 * 119.99742 * 84.79956 * 13 12 11 15 15 H 1.07997 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99612 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99898 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00128 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47074 * 90.00330 * 18 16 14 20 20 H 1.48507 * 109.47070 * 210.00087 * 18 16 14 21 21 H 1.48501 * 109.47094 * 329.99948 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62874 * 0.02562 * 9 7 6 24 24 H 4.44643 * 5.63287 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47052 * 206.80510 * 3 2 1 26 26 H 1.08997 * 109.47494 * 86.80841 * 3 2 1 27 27 H 1.09004 * 109.47566 * 60.00416 * 4 3 2 28 28 H 1.08998 * 109.47507 * 299.99801 * 4 3 2 29 29 H 1.09001 * 109.46994 * 59.99738 * 5 4 3 30 30 H 1.08997 * 109.47336 * 300.00201 * 5 4 3 31 31 H 1.09001 * 109.46917 * 60.00037 * 6 5 4 32 32 H 1.08997 * 109.47262 * 300.00592 * 6 5 4 33 33 H 1.09002 * 109.58751 * 353.41659 * 10 9 7 34 34 H 1.08996 * 109.58750 * 113.69843 * 10 9 7 35 35 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 36 36 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 37 37 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 38 38 H 0.97004 * 120.00020 * 264.79513 * 13 12 11 39 39 H 0.96996 * 120.00214 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 41 41 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 42 42 H 1.08998 * 109.58787 * 246.16207 * 23 9 7 43 43 H 1.09007 * 109.58600 * 6.44520 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2062 0.7897 5 6 4.6866 -1.2052 0.7903 6 6 5.1972 -2.4117 1.5805 7 6 6.7042 -2.4103 1.5815 8 8 7.3102 -1.5312 1.0065 9 7 7.3786 -3.3867 2.2207 10 6 8.8477 -3.3991 2.2301 11 6 9.3354 -4.7621 1.7288 12 6 8.6891 -5.8694 2.5650 13 7 9.1760 -7.1732 2.1075 14 6 10.3562 -7.6715 2.5913 15 1 10.9282 -7.1032 3.3098 16 6 10.8178 -8.9067 2.1574 17 7 11.9524 -9.3855 2.6220 18 14 9.8289 -9.8892 0.9141 19 1 10.2585 -9.5243 -0.4598 20 1 10.0572 -11.3399 1.1351 21 1 8.3847 -9.5848 1.0785 22 6 7.1677 -5.8103 2.4099 23 6 6.6585 -4.4593 2.9204 24 1 -1.0498 -0.0004 0.0000 25 1 3.0089 0.9181 0.4634 26 1 3.0094 -0.0564 -1.0260 27 1 2.7937 -2.1237 0.3262 28 1 2.7933 -1.1492 1.8158 29 1 5.0492 -0.2878 1.2540 30 1 5.0504 -1.2620 -0.2356 31 1 4.8346 -3.3293 1.1172 32 1 4.8334 -2.3545 2.6064 33 1 9.2240 -2.6130 1.5755 34 1 9.2080 -3.2329 3.2453 35 1 9.0539 -4.8872 0.6832 36 1 10.4199 -4.8177 1.8233 37 1 8.9528 -5.7308 3.6135 38 1 8.6624 -7.6835 1.4619 39 1 12.2748 -10.2487 2.3192 40 1 6.7115 -6.6135 2.9886 41 1 6.9040 -5.9244 1.3584 42 1 6.8397 -4.3823 3.9925 43 1 5.5900 -4.3712 2.7232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200140346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:34 Heat of formation + Delta-G solvation = 9.250856 kcal Electronic energy + Delta-G solvation = -21094.118691 eV Core-core repulsion = 17947.308680 eV Total energy + Delta-G solvation = -3146.810011 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15410 -37.64929 -36.34777 -34.64352 -33.48859 -32.07067 -31.16447 -30.15909 -29.53726 -25.83434 -24.63574 -22.93892 -22.33485 -21.51573 -20.23390 -18.96769 -18.31428 -17.59077 -16.98786 -16.29798 -15.77818 -15.18071 -14.86925 -14.57600 -14.12693 -14.04798 -13.94535 -13.59637 -13.31386 -12.93405 -12.82194 -12.52399 -12.37284 -12.06417 -11.91496 -11.68220 -11.49974 -11.05828 -11.03096 -10.94717 -10.90576 -10.52458 -10.49239 -10.40288 -10.32068 -10.00181 -9.65940 -9.61823 -8.95730 -8.54906 -7.31564 -5.80499 -3.16542 2.48834 2.52945 2.66220 3.05824 3.34190 3.37439 3.42772 4.01414 4.45124 4.55651 4.59280 4.64720 4.88131 4.97492 5.01661 5.04317 5.19447 5.27020 5.32900 5.37166 5.40793 5.49853 5.52801 5.56343 5.67675 5.69827 5.72924 5.79625 5.87009 5.95650 6.07529 6.10678 6.11109 6.22763 6.43810 6.49834 6.82189 6.92717 7.30333 7.47715 7.95082 8.21699 8.38442 9.16506 9.89166 10.08700 11.37676 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.002888 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.868701 B = 9692.142283 C =10241.728881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.183 4.183 3 C -0.015 4.015 4 C -0.115 4.115 5 C -0.105 4.105 6 C -0.140 4.140 7 C 0.512 3.488 8 O -0.549 6.549 9 N -0.609 5.609 10 C 0.112 3.888 11 C -0.150 4.150 12 C 0.183 3.817 13 N -0.749 5.749 14 C -0.244 4.244 15 H 0.090 0.910 16 C 0.004 3.996 17 N -0.933 5.933 18 Si 0.885 3.115 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.277 1.277 22 C -0.144 4.144 23 C 0.111 3.889 24 H 0.216 0.784 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.361 0.639 39 H 0.260 0.740 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.989 16.241 -1.645 25.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.183 4.183 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.180 4.180 7 C 0.301 3.699 8 O -0.427 6.427 9 N -0.342 5.342 10 C -0.011 4.011 11 C -0.191 4.191 12 C 0.074 3.926 13 N -0.390 5.390 14 C -0.374 4.374 15 H 0.108 0.892 16 C -0.192 4.192 17 N -0.581 5.581 18 Si 0.715 3.285 19 H -0.211 1.211 20 H -0.218 1.218 21 H -0.204 1.204 22 C -0.183 4.183 23 C -0.012 4.012 24 H 0.232 0.768 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.193 0.807 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.089 0.911 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.418 16.635 -1.805 25.632 hybrid contribution -0.774 -1.021 -0.879 1.554 sum -20.192 15.614 -2.684 25.665 Atomic orbital electron populations 1.24912 0.96004 1.01137 1.01385 1.23246 0.94679 1.00257 1.00166 1.18776 0.84461 0.99890 1.02067 1.21566 0.95427 0.97648 1.00568 1.21354 0.93752 0.97784 1.01354 1.21701 0.92367 1.01091 1.02861 1.20666 0.90159 0.81151 0.77970 1.90671 1.70508 1.37008 1.44540 1.48221 1.07505 1.25608 1.52866 1.21682 0.78443 0.99328 1.01642 1.22625 1.02084 0.93699 1.00643 1.20146 0.89968 0.85668 0.96861 1.42788 1.25604 1.18199 1.52449 1.19065 0.96356 1.01328 1.20671 0.89171 1.24688 0.97032 0.97574 0.99875 1.69700 1.21182 1.20069 1.47100 0.86544 0.79849 0.79968 0.82090 1.21139 1.21756 1.20371 1.22238 0.98266 0.96024 1.01763 1.21750 0.96146 0.86656 0.96689 0.76761 0.89410 0.89386 0.91433 0.91473 0.90943 0.90906 0.88871 0.88968 0.89608 0.91718 0.92441 0.90231 0.92559 0.80685 0.93040 0.90394 0.91883 0.91065 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.69 19.25 29.55 0.57 -1.12 16 2 C -0.18 -1.58 13.34 -37.12 -0.50 -2.08 16 3 C -0.02 -0.11 5.70 -29.52 -0.17 -0.28 16 4 C -0.11 -0.79 5.17 -26.73 -0.14 -0.92 16 5 C -0.10 -0.88 4.50 -26.73 -0.12 -1.00 16 6 C -0.14 -1.23 4.05 -27.88 -0.11 -1.34 16 7 C 0.51 6.67 7.70 -10.98 -0.08 6.58 16 8 O -0.55 -9.09 15.39 5.56 0.09 -9.00 16 9 N -0.61 -7.86 2.98 -172.80 -0.51 -8.38 16 10 C 0.11 1.62 6.43 -3.71 -0.02 1.59 16 11 C -0.15 -2.54 5.67 -26.59 -0.15 -2.69 16 12 C 0.18 3.28 2.73 -67.88 -0.19 3.09 16 13 N -0.75 -17.01 4.92 -53.37 -0.26 -17.27 16 14 C -0.24 -6.70 10.41 -15.06 -0.16 -6.86 16 15 H 0.09 2.65 8.06 -52.49 -0.42 2.22 16 16 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 17 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 18 Si 0.89 21.81 27.73 -169.99 -4.71 17.10 16 19 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 H -0.28 -6.38 6.52 56.52 0.37 -6.01 16 22 C -0.14 -1.98 5.55 -26.64 -0.15 -2.13 16 23 C 0.11 1.20 6.34 -3.74 -0.02 1.17 16 24 H 0.22 0.96 7.80 -54.10 -0.42 0.53 16 25 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.71 7.69 -51.93 -0.40 0.31 16 32 H 0.09 0.64 7.94 -51.93 -0.41 0.23 16 33 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 37 H 0.06 1.04 8.08 -51.93 -0.42 0.63 16 38 H 0.36 8.11 5.66 -40.82 -0.23 7.88 16 39 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 40 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.65 5.93 -51.92 -0.31 0.35 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -33.26 352.17 -7.87 -41.13 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.22 Total: 5.21 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.33 Total: -5.94 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.00 Total: -53.81 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.09 Total: -9.00 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.10 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.26 -7.87 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200140346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.382 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds