Wall clock time and date at job start Tue Mar 31 2020 00:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17410 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47142 * 326.80675 * 3 2 1 5 5 C 1.53005 * 109.47358 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47521 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47009 * 180.02562 * 6 5 4 8 8 O 1.21274 * 120.00423 * 359.97438 * 7 6 5 9 9 N 1.34783 * 119.99922 * 180.02562 * 7 6 5 10 10 C 1.46919 * 120.63144 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 233.55709 * 10 9 7 12 12 C 1.53070 * 109.29524 * 305.57804 * 11 10 9 13 13 N 1.46498 * 109.44278 * 181.23594 * 12 11 10 14 14 C 1.36936 * 119.99742 * 84.79956 * 13 12 11 15 15 H 1.07997 * 120.00304 * 359.97438 * 14 13 12 16 16 C 1.38819 * 119.99612 * 180.02562 * 14 13 12 17 17 N 1.31623 * 119.99898 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00128 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47074 * 90.00330 * 18 16 14 20 20 H 1.48507 * 109.47070 * 210.00087 * 18 16 14 21 21 H 1.48501 * 109.47094 * 329.99948 * 18 16 14 22 22 C 1.53039 * 109.65812 * 61.15209 * 12 11 10 23 23 C 1.46928 * 120.62874 * 0.02562 * 9 7 6 24 24 H 4.44643 * 5.63287 * 180.02562 * 4 1 2 25 25 H 1.09001 * 109.47052 * 206.80510 * 3 2 1 26 26 H 1.08997 * 109.47494 * 86.80841 * 3 2 1 27 27 H 1.09004 * 109.47566 * 60.00416 * 4 3 2 28 28 H 1.08998 * 109.47507 * 299.99801 * 4 3 2 29 29 H 1.09001 * 109.46994 * 59.99738 * 5 4 3 30 30 H 1.08997 * 109.47336 * 300.00201 * 5 4 3 31 31 H 1.09001 * 109.46917 * 60.00037 * 6 5 4 32 32 H 1.08997 * 109.47262 * 300.00592 * 6 5 4 33 33 H 1.09002 * 109.58751 * 353.41659 * 10 9 7 34 34 H 1.08996 * 109.58750 * 113.69843 * 10 9 7 35 35 H 1.08997 * 109.50046 * 65.38734 * 11 10 9 36 36 H 1.09003 * 109.49733 * 185.48713 * 11 10 9 37 37 H 1.09007 * 109.35101 * 301.12962 * 12 11 10 38 38 H 0.97004 * 120.00020 * 264.79513 * 13 12 11 39 39 H 0.96996 * 120.00214 * 179.97438 * 17 16 14 40 40 H 1.09002 * 109.49876 * 178.74890 * 22 12 11 41 41 H 1.09005 * 109.52615 * 58.67140 * 22 12 11 42 42 H 1.08998 * 109.58787 * 246.16207 * 23 9 7 43 43 H 1.09007 * 109.58600 * 6.44520 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.2062 0.7897 5 6 4.6866 -1.2052 0.7903 6 6 5.1972 -2.4117 1.5805 7 6 6.7042 -2.4103 1.5815 8 8 7.3102 -1.5312 1.0065 9 7 7.3786 -3.3867 2.2207 10 6 8.8477 -3.3991 2.2301 11 6 9.3354 -4.7621 1.7288 12 6 8.6891 -5.8694 2.5650 13 7 9.1760 -7.1732 2.1075 14 6 10.3562 -7.6715 2.5913 15 1 10.9282 -7.1032 3.3098 16 6 10.8178 -8.9067 2.1574 17 7 11.9524 -9.3855 2.6220 18 14 9.8289 -9.8892 0.9141 19 1 10.2585 -9.5243 -0.4598 20 1 10.0572 -11.3399 1.1351 21 1 8.3847 -9.5848 1.0785 22 6 7.1677 -5.8103 2.4099 23 6 6.6585 -4.4593 2.9204 24 1 -1.0498 -0.0004 0.0000 25 1 3.0089 0.9181 0.4634 26 1 3.0094 -0.0564 -1.0260 27 1 2.7937 -2.1237 0.3262 28 1 2.7933 -1.1492 1.8158 29 1 5.0492 -0.2878 1.2540 30 1 5.0504 -1.2620 -0.2356 31 1 4.8346 -3.3293 1.1172 32 1 4.8334 -2.3545 2.6064 33 1 9.2240 -2.6130 1.5755 34 1 9.2080 -3.2329 3.2453 35 1 9.0539 -4.8872 0.6832 36 1 10.4199 -4.8177 1.8233 37 1 8.9528 -5.7308 3.6135 38 1 8.6624 -7.6835 1.4619 39 1 12.2748 -10.2487 2.3192 40 1 6.7115 -6.6135 2.9886 41 1 6.9040 -5.9244 1.3584 42 1 6.8397 -4.3823 3.9925 43 1 5.5900 -4.3712 2.7232 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200140346.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:33 Heat of formation + Delta-G solvation = -11.209458 kcal Electronic energy + Delta-G solvation = -21095.005916 eV Core-core repulsion = 17947.308680 eV Total energy + Delta-G solvation = -3147.697237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20493 -38.87983 -36.99275 -36.22530 -34.20794 -33.84114 -32.26226 -31.58763 -30.49197 -26.92120 -25.87548 -24.05066 -23.89959 -22.29474 -21.49311 -20.21377 -19.36476 -18.82593 -18.07648 -17.01717 -16.80648 -16.68921 -16.00981 -15.87312 -15.21530 -15.07362 -14.96428 -14.81457 -14.60006 -14.32992 -13.84947 -13.74842 -13.54885 -13.27115 -12.94535 -12.65733 -12.59255 -12.51704 -12.16006 -12.14801 -12.02905 -11.93679 -11.78191 -11.55975 -11.41319 -11.08268 -10.94614 -10.94030 -10.69719 -9.64810 -9.30955 -8.01723 -5.35112 1.37431 1.41298 1.48539 1.68335 1.89919 1.95404 2.08754 2.48853 3.29389 3.44903 3.54534 3.68121 3.85768 4.01097 4.08461 4.13488 4.18247 4.32375 4.41133 4.45712 4.46527 4.60215 4.66427 4.69546 4.81143 4.83398 4.86728 4.90917 4.94661 4.97885 5.12714 5.13861 5.24345 5.30317 5.37632 5.45655 5.48685 5.62807 5.78262 6.22452 6.49675 6.74683 7.08710 7.22285 7.85166 8.03790 9.19717 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.029533 B = 0.002888 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.868701 B = 9692.142283 C =10241.728881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.215 4.215 3 C -0.019 4.019 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.134 4.134 7 C 0.506 3.494 8 O -0.592 6.592 9 N -0.611 5.611 10 C 0.120 3.880 11 C -0.139 4.139 12 C 0.174 3.826 13 N -0.752 5.752 14 C -0.227 4.227 15 H 0.056 0.944 16 C -0.068 4.068 17 N -0.985 5.985 18 Si 0.956 3.044 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.246 1.246 22 C -0.135 4.135 23 C 0.114 3.886 24 H 0.240 0.760 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.048 0.952 36 H 0.050 0.950 37 H 0.048 0.952 38 H 0.365 0.635 39 H 0.257 0.743 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.085 0.915 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.794 16.524 -1.777 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.215 4.215 3 C -0.055 4.055 4 C -0.141 4.141 5 C -0.138 4.138 6 C -0.173 4.173 7 C 0.297 3.703 8 O -0.473 6.473 9 N -0.343 5.343 10 C -0.003 4.003 11 C -0.180 4.180 12 C 0.067 3.933 13 N -0.394 5.394 14 C -0.358 4.358 15 H 0.074 0.926 16 C -0.259 4.259 17 N -0.636 5.636 18 Si 0.783 3.217 19 H -0.211 1.211 20 H -0.224 1.224 21 H -0.170 1.170 22 C -0.174 4.174 23 C -0.008 4.008 24 H 0.257 0.743 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.139 0.861 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.198 0.802 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.083 0.917 42 H 0.104 0.896 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -23.287 16.957 -1.925 28.871 hybrid contribution 0.446 -0.990 -0.795 1.345 sum -22.842 15.967 -2.720 28.002 Atomic orbital electron populations 1.25684 0.96963 1.00256 1.00505 1.23736 0.95554 1.01160 1.01064 1.18829 0.84006 1.00331 1.02337 1.21457 0.93957 0.97649 1.01033 1.21282 0.94777 0.97411 1.00333 1.21777 0.88644 1.02019 1.04844 1.21494 0.91925 0.80186 0.76684 1.90658 1.71738 1.38669 1.46228 1.48316 1.06589 1.26373 1.53039 1.21421 0.80248 0.96989 1.01670 1.22424 1.00331 0.95194 1.00048 1.20428 0.93305 0.83475 0.96138 1.42819 1.24189 1.19930 1.52470 1.19022 0.97276 1.00602 1.18863 0.92568 1.25532 0.98445 0.99205 1.02753 1.69889 1.23564 1.20625 1.49493 0.85398 0.79889 0.77524 0.78873 1.21138 1.22430 1.17043 1.22149 0.94367 0.98463 1.02419 1.21940 0.97950 0.83890 0.97049 0.74313 0.89010 0.89280 0.91005 0.90631 0.91975 0.92462 0.86726 0.86084 0.90833 0.90781 0.93325 0.93084 0.93438 0.80211 0.93471 0.89272 0.91654 0.89644 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.92 19.25 74.32 1.43 -1.49 16 2 C -0.22 -3.35 13.34 31.12 0.42 -2.93 16 3 C -0.02 -0.23 5.70 28.79 0.16 -0.07 16 4 C -0.10 -1.14 5.17 30.59 0.16 -0.98 16 5 C -0.10 -1.45 4.50 30.60 0.14 -1.31 16 6 C -0.13 -1.82 4.05 29.85 0.12 -1.70 16 7 C 0.51 12.00 7.70 87.66 0.67 12.68 16 8 O -0.59 -19.20 15.39 -3.01 -0.05 -19.25 16 9 N -0.61 -14.22 2.98 -819.01 -2.44 -16.66 16 10 C 0.12 3.41 6.43 86.36 0.56 3.97 16 11 C -0.14 -4.73 5.67 30.68 0.17 -4.56 16 12 C 0.17 6.05 2.73 45.03 0.12 6.18 16 13 N -0.75 -33.55 4.92 -322.76 -1.59 -35.14 16 14 C -0.23 -12.64 10.41 84.04 0.87 -11.77 16 15 H 0.06 3.45 8.06 -2.91 -0.02 3.43 16 16 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 17 N -0.99 -63.01 13.97 21.65 0.30 -62.70 16 18 Si 0.96 44.98 27.73 68.60 1.90 46.89 16 19 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 20 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 21 H -0.25 -10.19 6.52 99.48 0.65 -9.54 16 22 C -0.14 -3.26 5.55 30.65 0.17 -3.09 16 23 C 0.11 1.97 6.34 86.34 0.55 2.51 16 24 H 0.24 1.51 7.80 -4.43 -0.03 1.47 16 25 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 30 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.11 1.15 7.69 -2.39 -0.02 1.13 16 32 H 0.12 1.02 7.94 -2.39 -0.02 1.00 16 33 H 0.07 2.29 7.00 -2.39 -0.02 2.27 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.74 8.08 -2.38 -0.02 1.72 16 38 H 0.36 15.62 5.66 -92.71 -0.52 15.09 16 39 H 0.26 15.68 8.31 -92.71 -0.77 14.90 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 42 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.12 1.20 5.93 -2.38 -0.01 1.19 16 Total: -1.00 -75.01 352.17 4.53 -70.48 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.39 Total: 22.47 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: 6.01 Total: -6.08 kcal Atomic # 7 Polarization: -110.78 SS G_CDS: -3.72 Total: -114.50 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.05 Total: -19.25 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.90 Total: 46.89 kcal Total: -75.01 4.53 -70.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200140346.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.267 kcal (2) G-P(sol) polarization free energy of solvation -75.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds