Wall clock time and date at job start Tue Mar 31 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32863 * 1 3 3 C 1.47120 * 120.00176 * 2 1 4 4 C 1.50703 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.32863 * 120.00176 * 180.02562 * 3 2 1 6 6 C 1.50706 * 120.00150 * 173.81410 * 5 3 2 7 7 C 1.50697 * 109.46987 * 234.36484 * 6 5 3 8 8 O 1.21284 * 120.00093 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99861 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63090 * 359.71319 * 9 7 6 11 11 C 1.52755 * 109.01004 * 233.58731 * 10 9 7 12 12 C 1.53049 * 109.38334 * 305.58906 * 11 10 9 13 13 N 1.46505 * 109.44751 * 181.25407 * 12 11 10 14 14 C 1.36938 * 119.99774 * 84.94047 * 13 12 11 15 15 H 1.07997 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99519 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99778 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47284 * 89.99876 * 18 16 14 20 20 H 1.48507 * 109.47172 * 209.99996 * 18 16 14 21 21 H 1.48498 * 109.47124 * 329.99488 * 18 16 14 22 22 C 1.53037 * 109.53775 * 61.23859 * 12 11 10 23 23 C 1.46934 * 120.63075 * 179.97438 * 9 7 6 24 24 H 1.07997 * 120.00475 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00278 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46995 * 265.10551 * 4 3 2 28 28 H 1.09001 * 109.47278 * 25.10858 * 4 3 2 29 29 H 1.09002 * 109.46826 * 145.10476 * 4 3 2 30 30 H 1.07998 * 120.00262 * 354.08459 * 5 3 2 31 31 H 1.09005 * 109.46690 * 354.35959 * 6 5 3 32 32 H 1.09002 * 109.47251 * 114.36121 * 6 5 3 33 33 H 1.08998 * 109.58757 * 353.42598 * 10 9 7 34 34 H 1.09005 * 109.58159 * 113.84719 * 10 9 7 35 35 H 1.08997 * 109.56492 * 185.55452 * 11 10 9 36 36 H 1.08994 * 109.38919 * 65.51709 * 11 10 9 37 37 H 1.08995 * 109.45759 * 301.21571 * 12 11 10 38 38 H 0.96992 * 119.99645 * 264.93921 * 13 12 11 39 39 H 0.97000 * 119.99625 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.49814 * 178.67787 * 22 12 11 41 41 H 1.09006 * 109.52410 * 58.60398 * 22 12 11 42 42 H 1.08993 * 109.58485 * 246.15237 * 23 9 7 43 43 H 1.08995 * 109.58149 * 6.43768 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3107 2.5792 0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1464 2.5716 -0.1412 7 6 5.1140 2.4684 -1.2918 8 8 5.1851 1.4421 -1.9342 9 7 5.9011 3.5163 -1.6065 10 6 5.8227 4.7679 -0.8410 11 6 5.5893 5.9281 -1.8068 12 6 6.6751 5.9175 -2.8854 13 7 6.4699 7.0474 -3.7951 14 6 6.9765 8.2802 -3.4808 15 1 7.5268 8.4196 -2.5621 16 6 6.7825 9.3505 -4.3431 17 7 6.1122 9.1804 -5.4630 18 14 7.4741 11.0321 -3.9148 19 1 8.8473 11.1577 -4.4661 20 1 6.6077 12.0872 -4.4991 21 1 7.5171 11.1883 -2.4386 22 6 6.6005 4.6080 -3.6738 23 6 6.8497 3.4306 -2.7253 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2046 2.9379 -1.0232 28 1 0.3233 2.4285 0.4370 29 1 1.8593 3.3151 0.5885 30 1 3.9330 0.3438 0.0955 31 1 3.4422 3.3820 -0.3301 32 1 4.6956 2.7744 0.7783 33 1 4.9961 4.7118 -0.1327 34 1 6.7575 4.9262 -0.3030 35 1 5.6279 6.8708 -1.2610 36 1 4.6109 5.8184 -2.2744 37 1 7.6547 6.0031 -2.4152 38 1 5.9753 6.9221 -4.6200 39 1 5.9770 9.9283 -6.0657 40 1 7.3587 4.6111 -4.4568 41 1 5.6128 4.5097 -4.1243 42 1 7.8697 3.4780 -2.3438 43 1 6.7021 2.4915 -3.2583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202054428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:31 Heat of formation + Delta-G solvation = 2.069942 kcal Electronic energy + Delta-G solvation = -21460.132814 eV Core-core repulsion = 18313.011415 eV Total energy + Delta-G solvation = -3147.121399 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.10954 -37.66993 -36.82564 -34.48884 -32.82376 -31.96748 -30.88010 -29.43512 -28.69298 -26.79895 -24.77610 -23.00286 -22.70357 -21.27553 -20.10535 -18.75776 -18.02250 -17.24780 -17.01769 -16.28934 -15.67482 -15.07176 -14.82395 -14.37378 -13.93972 -13.77314 -13.64777 -13.52574 -13.37956 -13.17517 -12.90118 -12.45015 -12.33778 -11.97270 -11.73979 -11.60285 -11.56244 -11.05370 -10.95522 -10.87372 -10.84105 -10.67491 -10.49399 -10.25436 -9.85524 -9.72510 -9.67166 -8.93995 -8.49713 -8.35853 -7.00921 -5.80443 -3.09849 1.17523 2.69767 2.82437 3.20316 3.40302 3.45328 3.47231 4.49501 4.54547 4.60522 4.70486 4.97737 5.06823 5.13972 5.16908 5.29095 5.32851 5.33840 5.40297 5.43775 5.51599 5.54740 5.63912 5.68390 5.71257 5.83366 5.93356 6.00096 6.18100 6.21577 6.31077 6.35493 6.37574 6.48899 6.52196 6.61518 6.77769 6.87345 7.01339 7.52821 7.65307 8.26266 8.37796 9.48978 10.06539 10.41173 11.42103 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003237 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.120834 B = 8646.588340 C = 9109.121956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.113 4.113 3 C -0.112 4.112 4 C -0.124 4.124 5 C -0.116 4.116 6 C -0.118 4.118 7 C 0.518 3.482 8 O -0.548 6.548 9 N -0.607 5.607 10 C 0.107 3.893 11 C -0.152 4.152 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.139 4.139 23 C 0.116 3.884 24 H 0.099 0.901 25 H 0.102 0.898 26 H 0.113 0.887 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.464 -14.821 13.171 20.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.131 4.131 3 C -0.112 4.112 4 C -0.181 4.181 5 C -0.134 4.134 6 C -0.157 4.157 7 C 0.307 3.693 8 O -0.426 6.426 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.193 4.193 12 C 0.069 3.931 13 N -0.365 5.365 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.737 3.263 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.178 4.178 23 C -0.007 4.007 24 H 0.118 0.882 25 H 0.120 0.880 26 H 0.131 0.869 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.135 0.865 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.084 0.916 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.329 -15.179 12.880 20.889 hybrid contribution 0.185 1.068 -0.107 1.089 sum -6.144 -14.111 12.773 20.000 Atomic orbital electron populations 1.24400 0.95721 1.01994 1.00724 1.21852 0.95290 0.96057 0.99872 1.20554 0.93912 0.94382 1.02374 1.20907 1.00163 0.94500 1.02497 1.22793 0.93864 0.97770 0.99008 1.20836 0.98340 0.98375 0.98134 1.20448 0.80685 0.83023 0.85180 1.90670 1.68804 1.29679 1.53405 1.48198 1.39206 1.13682 1.32982 1.21788 1.01832 0.83736 0.94292 1.22604 1.01739 0.96626 0.98373 1.20158 0.95592 0.86956 0.90397 1.42441 1.65831 1.05215 1.22975 1.19226 1.27749 0.86377 1.03780 0.91167 1.24757 1.01024 0.98182 0.96983 1.69665 1.45498 1.30981 1.11885 0.86205 0.78307 0.84227 0.77520 1.21715 1.21793 1.20763 1.22209 1.02576 0.94689 0.98318 1.21612 0.91700 0.99950 0.87426 0.88242 0.88018 0.86881 0.91236 0.91498 0.91282 0.86474 0.87848 0.88000 0.90500 0.91420 0.90569 0.92223 0.93419 0.78264 0.93474 0.90585 0.91882 0.91637 0.89425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.58 14.11 28.88 0.41 -1.17 16 2 C -0.11 -1.08 9.83 -37.83 -0.37 -1.45 16 3 C -0.11 -1.16 5.98 -102.87 -0.62 -1.77 16 4 C -0.12 -1.10 8.53 36.01 0.31 -0.79 16 5 C -0.12 -1.27 8.45 -36.16 -0.31 -1.58 16 6 C -0.12 -1.23 4.12 -29.03 -0.12 -1.35 16 7 C 0.52 7.33 7.69 -10.99 -0.08 7.24 16 8 O -0.55 -9.61 15.45 5.55 0.09 -9.53 16 9 N -0.61 -8.34 2.98 -173.01 -0.52 -8.85 16 10 C 0.11 1.31 6.31 -3.94 -0.02 1.29 16 11 C -0.15 -2.45 5.64 -26.83 -0.15 -2.60 16 12 C 0.18 3.36 2.73 -67.88 -0.19 3.17 16 13 N -0.72 -17.58 5.12 -53.38 -0.27 -17.86 16 14 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 15 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 18 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 22 C -0.14 -2.29 5.55 -26.59 -0.15 -2.44 16 23 C 0.12 1.67 6.44 -3.69 -0.02 1.64 16 24 H 0.10 0.67 8.06 -52.49 -0.42 0.25 16 25 H 0.10 0.77 6.06 -52.49 -0.32 0.45 16 26 H 0.11 1.00 8.06 -52.48 -0.42 0.57 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.51 6.19 -51.93 -0.32 0.19 16 29 H 0.07 0.54 6.72 -51.93 -0.35 0.19 16 30 H 0.12 1.32 8.05 -52.49 -0.42 0.90 16 31 H 0.10 0.99 5.34 -51.93 -0.28 0.71 16 32 H 0.10 0.84 7.95 -51.93 -0.41 0.43 16 33 H 0.08 0.75 5.93 -51.93 -0.31 0.44 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.63 346.68 -8.20 -39.83 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.86 Total: 8.24 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: -1.56 Total: -6.88 kcal Atomic # 7 Polarization: -53.73 SS G_CDS: -0.06 Total: -53.80 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.53 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.63 -8.20 -39.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202054428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.897 kcal (2) G-P(sol) polarization free energy of solvation -31.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds