Wall clock time and date at job start Tue Mar 31 2020 00:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32863 * 1 3 3 C 1.47120 * 120.00176 * 2 1 4 4 C 1.50703 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.32863 * 120.00176 * 180.02562 * 3 2 1 6 6 C 1.50706 * 120.00150 * 173.81410 * 5 3 2 7 7 C 1.50697 * 109.46987 * 234.36484 * 6 5 3 8 8 O 1.21284 * 120.00093 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99861 * 180.02562 * 7 6 5 10 10 C 1.46925 * 120.63090 * 359.71319 * 9 7 6 11 11 C 1.52755 * 109.01004 * 233.58731 * 10 9 7 12 12 C 1.53049 * 109.38334 * 305.58906 * 11 10 9 13 13 N 1.46505 * 109.44751 * 181.25407 * 12 11 10 14 14 C 1.36938 * 119.99774 * 84.94047 * 13 12 11 15 15 H 1.07997 * 120.00037 * 359.97438 * 14 13 12 16 16 C 1.38811 * 119.99519 * 179.97438 * 14 13 12 17 17 N 1.31621 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99778 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47284 * 89.99876 * 18 16 14 20 20 H 1.48507 * 109.47172 * 209.99996 * 18 16 14 21 21 H 1.48498 * 109.47124 * 329.99488 * 18 16 14 22 22 C 1.53037 * 109.53775 * 61.23859 * 12 11 10 23 23 C 1.46934 * 120.63075 * 179.97438 * 9 7 6 24 24 H 1.07997 * 120.00475 * 179.97438 * 1 2 3 25 25 H 1.08002 * 119.99836 * 359.97438 * 1 2 3 26 26 H 1.08003 * 120.00278 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.46995 * 265.10551 * 4 3 2 28 28 H 1.09001 * 109.47278 * 25.10858 * 4 3 2 29 29 H 1.09002 * 109.46826 * 145.10476 * 4 3 2 30 30 H 1.07998 * 120.00262 * 354.08459 * 5 3 2 31 31 H 1.09005 * 109.46690 * 354.35959 * 6 5 3 32 32 H 1.09002 * 109.47251 * 114.36121 * 6 5 3 33 33 H 1.08998 * 109.58757 * 353.42598 * 10 9 7 34 34 H 1.09005 * 109.58159 * 113.84719 * 10 9 7 35 35 H 1.08997 * 109.56492 * 185.55452 * 11 10 9 36 36 H 1.08994 * 109.38919 * 65.51709 * 11 10 9 37 37 H 1.08995 * 109.45759 * 301.21571 * 12 11 10 38 38 H 0.96992 * 119.99645 * 264.93921 * 13 12 11 39 39 H 0.97000 * 119.99625 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.49814 * 178.67787 * 22 12 11 41 41 H 1.09006 * 109.52410 * 58.60398 * 22 12 11 42 42 H 1.08993 * 109.58485 * 246.15237 * 23 9 7 43 43 H 1.08995 * 109.58149 * 6.43768 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2741 0.0000 4 6 1.3107 2.5792 0.0006 5 6 3.3929 1.2741 -0.0005 6 6 4.1464 2.5716 -0.1412 7 6 5.1140 2.4684 -1.2918 8 8 5.1851 1.4421 -1.9342 9 7 5.9011 3.5163 -1.6065 10 6 5.8227 4.7679 -0.8410 11 6 5.5893 5.9281 -1.8068 12 6 6.6751 5.9175 -2.8854 13 7 6.4699 7.0474 -3.7951 14 6 6.9765 8.2802 -3.4808 15 1 7.5268 8.4196 -2.5621 16 6 6.7825 9.3505 -4.3431 17 7 6.1122 9.1804 -5.4630 18 14 7.4741 11.0321 -3.9148 19 1 8.8473 11.1577 -4.4661 20 1 6.6077 12.0872 -4.4991 21 1 7.5171 11.1883 -2.4386 22 6 6.6005 4.6080 -3.6738 23 6 6.8497 3.4306 -2.7253 24 1 -0.5401 -0.9352 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8687 -0.9353 -0.0004 27 1 1.2046 2.9379 -1.0232 28 1 0.3233 2.4285 0.4370 29 1 1.8593 3.3151 0.5885 30 1 3.9330 0.3438 0.0955 31 1 3.4422 3.3820 -0.3301 32 1 4.6956 2.7744 0.7783 33 1 4.9961 4.7118 -0.1327 34 1 6.7575 4.9262 -0.3030 35 1 5.6279 6.8708 -1.2610 36 1 4.6109 5.8184 -2.2744 37 1 7.6547 6.0031 -2.4152 38 1 5.9753 6.9221 -4.6200 39 1 5.9770 9.9283 -6.0657 40 1 7.3587 4.6111 -4.4568 41 1 5.6128 4.5097 -4.1243 42 1 7.8697 3.4780 -2.3438 43 1 6.7021 2.4915 -3.2583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202054428.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:31 Heat of formation + Delta-G solvation = -16.636948 kcal Electronic energy + Delta-G solvation = -21460.944006 eV Core-core repulsion = 18313.011415 eV Total energy + Delta-G solvation = -3147.932590 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23759 -38.88237 -37.71797 -36.12168 -33.98299 -33.38223 -32.05839 -31.03409 -29.58856 -27.64673 -26.38347 -24.39441 -24.09287 -22.27972 -21.31529 -19.92685 -19.04187 -18.80117 -18.19917 -17.18590 -16.73856 -16.68472 -16.06338 -15.47231 -15.42307 -15.15636 -14.92112 -14.83426 -14.34638 -14.21471 -13.90701 -13.59707 -13.41642 -13.18488 -13.04153 -12.83626 -12.64476 -12.49338 -12.31557 -12.17159 -12.14447 -11.98319 -11.72743 -11.67421 -11.38697 -11.30012 -10.95966 -10.75879 -9.65997 -9.10291 -8.99796 -7.92308 -5.21113 0.44040 1.49144 1.50470 1.58634 1.63232 1.97124 2.25537 2.57827 3.41127 3.61513 3.75097 3.83348 3.93587 4.01619 4.10618 4.19940 4.31203 4.37510 4.40893 4.43203 4.45353 4.58456 4.66327 4.77786 4.82743 4.85043 4.88002 4.88465 4.99881 5.04733 5.08977 5.14675 5.32010 5.49092 5.51127 5.55769 5.60380 5.64911 5.80119 6.05234 6.29322 6.45461 7.17850 7.35228 8.11225 8.34009 9.31504 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026888 B = 0.003237 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.120834 B = 8646.588340 C = 9109.121956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C -0.111 4.111 4 C -0.127 4.127 5 C -0.137 4.137 6 C -0.108 4.108 7 C 0.514 3.486 8 O -0.588 6.588 9 N -0.609 5.609 10 C 0.114 3.886 11 C -0.142 4.142 12 C 0.173 3.827 13 N -0.740 5.740 14 C -0.233 4.233 15 H 0.081 0.919 16 C -0.080 4.080 17 N -0.973 5.973 18 Si 0.971 3.029 19 H -0.290 1.290 20 H -0.300 1.300 21 H -0.265 1.265 22 C -0.128 4.128 23 C 0.122 3.878 24 H 0.114 0.886 25 H 0.110 0.890 26 H 0.113 0.887 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.106 0.894 31 H 0.117 0.883 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.045 0.955 37 H 0.050 0.950 38 H 0.369 0.631 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.738 -14.884 15.718 22.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.111 4.111 4 C -0.183 4.183 5 C -0.156 4.156 6 C -0.147 4.147 7 C 0.304 3.696 8 O -0.469 6.469 9 N -0.341 5.341 10 C -0.008 4.008 11 C -0.183 4.183 12 C 0.065 3.935 13 N -0.378 5.378 14 C -0.365 4.365 15 H 0.099 0.901 16 C -0.272 4.272 17 N -0.624 5.624 18 Si 0.801 3.199 19 H -0.217 1.217 20 H -0.227 1.227 21 H -0.190 1.190 22 C -0.167 4.167 23 C -0.001 4.001 24 H 0.133 0.867 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.081 0.919 28 H 0.097 0.903 29 H 0.101 0.899 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.149 0.851 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.200 0.800 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.588 -15.265 15.494 22.726 hybrid contribution 0.214 0.972 -0.893 1.337 sum -6.374 -14.293 14.601 21.403 Atomic orbital electron populations 1.24645 0.95306 1.03151 0.98187 1.21987 0.96010 0.96054 1.01881 1.20817 0.93975 0.95324 1.01005 1.20972 1.00917 0.93989 1.02416 1.22772 0.94223 0.97742 1.00861 1.20848 0.97772 0.98495 0.97606 1.21132 0.80581 0.82276 0.85587 1.90654 1.69934 1.31281 1.54992 1.48286 1.38878 1.14230 1.32710 1.21860 1.04404 0.81160 0.93425 1.22382 0.99651 0.98240 0.98030 1.20427 0.96588 0.86026 0.90506 1.42686 1.65604 1.06088 1.23471 1.19640 1.26158 0.87239 1.03440 0.90145 1.25565 1.02411 1.01903 0.97297 1.69831 1.47832 1.31565 1.13219 0.85167 0.77087 0.79714 0.77976 1.21730 1.22663 1.18984 1.22061 1.01491 0.94676 0.98464 1.21486 0.92969 0.98206 0.87467 0.86735 0.87239 0.86911 0.91918 0.90291 0.89904 0.87611 0.86544 0.85068 0.86980 0.89395 0.91261 0.93652 0.93172 0.79960 0.94222 0.91215 0.93452 0.89787 0.90252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.55 14.11 66.64 0.94 -1.61 16 2 C -0.14 -2.55 9.83 23.43 0.23 -2.32 16 3 C -0.11 -2.13 5.98 -18.71 -0.11 -2.25 16 4 C -0.13 -1.95 8.53 71.24 0.61 -1.34 16 5 C -0.14 -2.85 8.45 24.51 0.21 -2.64 16 6 C -0.11 -1.98 4.12 29.10 0.12 -1.86 16 7 C 0.51 13.68 7.69 87.66 0.67 14.35 16 8 O -0.59 -20.45 15.45 -3.04 -0.05 -20.50 16 9 N -0.61 -15.40 2.98 -819.67 -2.44 -17.84 16 10 C 0.11 2.41 6.31 86.22 0.54 2.95 16 11 C -0.14 -4.33 5.64 30.53 0.17 -4.16 16 12 C 0.17 6.34 2.73 45.02 0.12 6.46 16 13 N -0.74 -36.14 5.12 -322.80 -1.65 -37.80 16 14 C -0.23 -12.44 9.93 84.03 0.83 -11.60 16 15 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 16 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 17 N -0.97 -59.35 13.06 21.65 0.28 -59.07 16 18 Si 0.97 45.18 29.55 68.60 2.03 47.20 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 C -0.13 -4.20 5.55 30.68 0.17 -4.03 16 23 C 0.12 3.37 6.44 86.37 0.56 3.92 16 24 H 0.11 1.28 8.06 -2.91 -0.02 1.26 16 25 H 0.11 1.39 6.06 -2.91 -0.02 1.37 16 26 H 0.11 1.96 8.06 -2.91 -0.02 1.93 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.08 1.00 6.19 -2.39 -0.01 0.99 16 29 H 0.08 1.03 6.72 -2.39 -0.02 1.01 16 30 H 0.11 2.38 8.05 -2.91 -0.02 2.35 16 31 H 0.12 1.84 5.34 -2.38 -0.01 1.83 16 32 H 0.13 1.62 7.95 -2.39 -0.02 1.60 16 33 H 0.11 1.65 5.93 -2.39 -0.01 1.64 16 34 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 35 H 0.07 2.22 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.37 19.92 7.80 -92.71 -0.72 19.19 16 39 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 2.37 7.00 -2.39 -0.02 2.35 16 Total: -1.00 -69.32 346.68 3.97 -65.35 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.27 Total: 30.81 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 5.53 Total: -8.17 kcal Atomic # 7 Polarization: -110.89 SS G_CDS: -3.81 Total: -114.70 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.05 Total: -20.50 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.32 3.97 -65.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202054428.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.713 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds