Wall clock time and date at job start Tue Mar 31 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47207 * 179.97438 * 332.25692 * 3 2 1 5 5 C 1.53001 * 109.46838 * 113.71565 * 4 3 2 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46946 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00166 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99585 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62730 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 126.46248 * 10 9 7 12 12 C 1.53044 * 109.31440 * 54.56430 * 11 10 9 13 13 N 1.46498 * 109.46002 * 178.62636 * 12 11 10 14 14 C 1.36937 * 119.99990 * 204.99521 * 13 12 11 15 15 H 1.08000 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47131 * 60.00444 * 18 16 14 20 20 H 1.48510 * 109.47046 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47349 * 300.00081 * 18 16 14 22 22 C 1.53040 * 109.53662 * 298.63203 * 12 11 10 23 23 C 1.46957 * 120.65462 * 359.81587 * 9 7 6 24 24 H 1.08999 * 109.47019 * 94.03052 * 1 2 3 25 25 H 1.08997 * 109.47190 * 214.02908 * 1 2 3 26 26 H 1.09002 * 109.47356 * 334.03196 * 1 2 3 27 27 H 1.09002 * 109.47140 * 353.71168 * 4 3 2 28 28 H 1.08999 * 109.46773 * 233.71462 * 4 3 2 29 29 H 1.08997 * 109.47213 * 59.99575 * 5 4 3 30 30 H 1.09002 * 109.46850 * 299.99582 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99514 * 6 5 4 32 32 H 1.08999 * 109.46626 * 299.99890 * 6 5 4 33 33 H 1.09002 * 109.58861 * 6.60251 * 10 9 7 34 34 H 1.08996 * 109.58519 * 246.32142 * 10 9 7 35 35 H 1.09003 * 109.49294 * 174.51508 * 11 10 9 36 36 H 1.09001 * 109.49969 * 294.57596 * 11 10 9 37 37 H 1.08994 * 109.45986 * 58.65006 * 12 11 10 38 38 H 0.97003 * 120.00330 * 24.99965 * 13 12 11 39 39 H 0.97009 * 119.99843 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.49643 * 181.31582 * 22 12 11 41 41 H 1.08996 * 109.49892 * 301.41776 * 22 12 11 42 42 H 1.09001 * 109.46843 * 113.75468 * 23 9 7 43 43 H 1.08997 * 109.71602 * 353.46961 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 0.0003 5 6 4.6282 0.5808 -1.3203 6 6 6.1582 0.5803 -1.3203 7 6 6.6607 1.1512 -2.6213 8 8 5.8728 1.5215 -3.4656 9 7 7.9859 1.2502 -2.8465 10 6 8.4910 1.8052 -4.1097 11 6 9.4704 2.9406 -3.7961 12 6 10.5616 2.4229 -2.8563 13 7 11.5184 3.4974 -2.5804 14 6 12.8036 3.1936 -2.2183 15 1 13.1120 2.1618 -2.1366 16 6 13.7103 4.2118 -1.9574 17 7 13.3345 5.4692 -2.0576 18 14 15.4637 3.7973 -1.4642 19 1 16.1093 3.0105 -2.5456 20 1 16.2254 5.0527 -1.2425 21 1 15.4502 2.9994 -0.2119 22 6 9.9276 1.9558 -1.5441 23 6 8.9534 0.8096 -1.8319 24 1 -0.3633 -0.0722 -1.0251 25 1 -0.3633 -0.8517 0.5751 26 1 -0.3634 0.9239 0.4500 27 1 4.4814 -1.0209 0.1129 28 1 4.4811 0.6088 0.8288 29 1 4.2648 1.6022 -1.4329 30 1 4.2651 -0.0275 -2.1487 31 1 6.5213 -0.4413 -1.2078 32 1 6.5217 1.1883 -0.4918 33 1 7.6587 2.1923 -4.6975 34 1 9.0040 1.0251 -4.6722 35 1 9.9250 3.2948 -4.7214 36 1 8.9355 3.7605 -3.3166 37 1 11.0797 1.5873 -3.3269 38 1 11.2415 4.4242 -2.6542 39 1 13.9681 6.1808 -1.8749 40 1 10.7076 1.6089 -0.8664 41 1 9.3884 2.7845 -1.0853 42 1 9.5048 -0.0529 -2.2061 43 1 8.4280 0.5382 -0.9163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202075180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:39 Heat of formation + Delta-G solvation = 0.906586 kcal Electronic energy + Delta-G solvation = -20920.197595 eV Core-core repulsion = 17773.025749 eV Total energy + Delta-G solvation = -3147.171846 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.08583 -37.50945 -35.84827 -34.48445 -33.51727 -32.08392 -31.00532 -29.78325 -29.10634 -26.80128 -24.81473 -23.08418 -22.91447 -21.82536 -20.15939 -18.78899 -17.34953 -17.05545 -16.56383 -16.09028 -15.57405 -14.84848 -14.80146 -14.13555 -14.02148 -13.90324 -13.77471 -13.70633 -13.49039 -13.32277 -13.15517 -12.61667 -12.54431 -12.20118 -11.93308 -11.61203 -11.54720 -11.09367 -10.95987 -10.87915 -10.83268 -10.48690 -10.28270 -9.98220 -9.88937 -9.85100 -9.70852 -9.63435 -8.93024 -8.48340 -7.00594 -5.79901 -3.09369 2.48796 2.53208 2.71303 3.12553 3.40906 3.45507 3.46724 4.01525 4.49821 4.55399 4.80475 4.82647 5.03057 5.15680 5.18966 5.27667 5.31368 5.34694 5.36627 5.37112 5.39591 5.43070 5.46399 5.52202 5.64175 5.70802 5.75333 5.93229 5.95466 6.00581 6.11302 6.21805 6.35803 6.38405 6.49731 6.61864 6.87868 7.01882 7.46779 7.53825 7.65166 8.26649 8.38289 9.49352 10.06986 10.41594 11.42500 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.002666 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.394974 B =10499.400240 C =10847.207309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.513 3.487 8 O -0.551 6.551 9 N -0.607 5.607 10 C 0.115 3.885 11 C -0.139 4.139 12 C 0.179 3.821 13 N -0.724 5.724 14 C -0.241 4.241 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.152 4.152 23 C 0.107 3.893 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.713 -12.562 3.373 22.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.181 4.181 7 C 0.302 3.698 8 O -0.430 6.430 9 N -0.340 5.340 10 C -0.007 4.007 11 C -0.178 4.178 12 C 0.068 3.932 13 N -0.365 5.365 14 C -0.372 4.372 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.193 4.193 23 C -0.017 4.017 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.104 0.896 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.927 -12.415 2.952 22.828 hybrid contribution 1.099 0.176 0.429 1.193 sum -17.828 -12.240 3.381 21.888 Atomic orbital electron populations 1.18829 0.84792 1.02857 1.02979 1.22413 0.93983 1.02046 1.01661 1.22353 0.93671 1.01011 1.01152 1.18727 0.84422 1.02382 0.98900 1.21282 0.93100 1.02802 0.96437 1.21705 0.97057 1.02881 0.96410 1.20611 0.81864 0.78416 0.88947 1.90671 1.54945 1.50038 1.47302 1.48212 1.05439 1.62094 1.18299 1.21594 0.97822 0.96111 0.85214 1.22202 0.96849 0.97606 1.01111 1.20166 0.89157 0.92218 0.91633 1.42433 1.07946 1.03853 1.82221 1.19183 0.87040 0.92412 1.38579 0.91216 1.24759 0.98355 0.95243 1.02592 1.69657 1.34772 0.98005 1.55595 0.86275 0.84746 0.76821 0.78358 1.21268 1.21713 1.21279 1.22668 0.97898 0.96967 1.01739 1.21866 0.90995 0.97981 0.90814 0.90256 0.90385 0.90314 0.89562 0.89463 0.90795 0.90896 0.88758 0.88528 0.89462 0.91692 0.90600 0.91882 0.93430 0.78259 0.93430 0.90608 0.92190 0.91507 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.25 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.10 14.13 -37.12 -0.52 -2.62 16 3 C -0.18 -1.97 13.34 -37.12 -0.50 -2.47 16 4 C -0.01 -0.07 5.70 -29.51 -0.17 -0.23 16 5 C -0.10 -0.99 4.46 -26.73 -0.12 -1.11 16 6 C -0.14 -1.35 4.05 -27.88 -0.11 -1.46 16 7 C 0.51 7.09 7.70 -10.98 -0.08 7.00 16 8 O -0.55 -9.54 15.39 5.56 0.09 -9.45 16 9 N -0.61 -8.26 2.98 -172.77 -0.51 -8.78 16 10 C 0.12 1.66 6.43 -3.71 -0.02 1.63 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.18 3.35 2.73 -67.89 -0.19 3.16 16 13 N -0.72 -17.59 5.12 -53.39 -0.27 -17.87 16 14 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 15 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 18 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.15 -2.44 5.66 -26.63 -0.15 -2.59 16 23 C 0.11 1.30 6.33 -3.71 -0.02 1.27 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.09 0.70 7.95 -51.93 -0.41 0.28 16 32 H 0.10 0.81 7.69 -51.93 -0.40 0.41 16 33 H 0.09 1.31 7.01 -51.93 -0.36 0.95 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.08 0.74 5.95 -51.93 -0.31 0.43 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -32.72 355.63 -8.83 -41.55 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.26 Total: 6.18 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.93 Total: -6.84 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.06 Total: -53.74 kcal Atomic # 8 Polarization: -9.54 SS G_CDS: 0.09 Total: -9.45 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.72 -8.83 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202075180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.461 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds