Wall clock time and date at job start Tue Mar 31 2020 00:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47197 * 1 3 3 C 1.17401 * 179.97438 * 2 1 4 4 C 1.47207 * 179.97438 * 332.25692 * 3 2 1 5 5 C 1.53001 * 109.46838 * 113.71565 * 4 3 2 6 6 C 1.53002 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46946 * 179.97438 * 6 5 4 8 8 O 1.21276 * 120.00166 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99585 * 179.97438 * 7 6 5 10 10 C 1.46926 * 120.62730 * 180.02562 * 9 7 6 11 11 C 1.53191 * 108.89109 * 126.46248 * 10 9 7 12 12 C 1.53044 * 109.31440 * 54.56430 * 11 10 9 13 13 N 1.46498 * 109.46002 * 178.62636 * 12 11 10 14 14 C 1.36937 * 119.99990 * 204.99521 * 13 12 11 15 15 H 1.08000 * 119.99847 * 0.02562 * 14 13 12 16 16 C 1.38807 * 120.00023 * 179.97438 * 14 13 12 17 17 N 1.31621 * 119.99903 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47131 * 60.00444 * 18 16 14 20 20 H 1.48510 * 109.47046 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47349 * 300.00081 * 18 16 14 22 22 C 1.53040 * 109.53662 * 298.63203 * 12 11 10 23 23 C 1.46957 * 120.65462 * 359.81587 * 9 7 6 24 24 H 1.08999 * 109.47019 * 94.03052 * 1 2 3 25 25 H 1.08997 * 109.47190 * 214.02908 * 1 2 3 26 26 H 1.09002 * 109.47356 * 334.03196 * 1 2 3 27 27 H 1.09002 * 109.47140 * 353.71168 * 4 3 2 28 28 H 1.08999 * 109.46773 * 233.71462 * 4 3 2 29 29 H 1.08997 * 109.47213 * 59.99575 * 5 4 3 30 30 H 1.09002 * 109.46850 * 299.99582 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99514 * 6 5 4 32 32 H 1.08999 * 109.46626 * 299.99890 * 6 5 4 33 33 H 1.09002 * 109.58861 * 6.60251 * 10 9 7 34 34 H 1.08996 * 109.58519 * 246.32142 * 10 9 7 35 35 H 1.09003 * 109.49294 * 174.51508 * 11 10 9 36 36 H 1.09001 * 109.49969 * 294.57596 * 11 10 9 37 37 H 1.08994 * 109.45986 * 58.65006 * 12 11 10 38 38 H 0.97003 * 120.00330 * 24.99965 * 13 12 11 39 39 H 0.97009 * 119.99843 * 179.97438 * 17 16 14 40 40 H 1.08995 * 109.49643 * 181.31582 * 22 12 11 41 41 H 1.08996 * 109.49892 * 301.41776 * 22 12 11 42 42 H 1.09001 * 109.46843 * 113.75468 * 23 9 7 43 43 H 1.08997 * 109.71602 * 353.46961 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0006 0.0003 5 6 4.6282 0.5808 -1.3203 6 6 6.1582 0.5803 -1.3203 7 6 6.6607 1.1512 -2.6213 8 8 5.8728 1.5215 -3.4656 9 7 7.9859 1.2502 -2.8465 10 6 8.4910 1.8052 -4.1097 11 6 9.4704 2.9406 -3.7961 12 6 10.5616 2.4229 -2.8563 13 7 11.5184 3.4974 -2.5804 14 6 12.8036 3.1936 -2.2183 15 1 13.1120 2.1618 -2.1366 16 6 13.7103 4.2118 -1.9574 17 7 13.3345 5.4692 -2.0576 18 14 15.4637 3.7973 -1.4642 19 1 16.1093 3.0105 -2.5456 20 1 16.2254 5.0527 -1.2425 21 1 15.4502 2.9994 -0.2119 22 6 9.9276 1.9558 -1.5441 23 6 8.9534 0.8096 -1.8319 24 1 -0.3633 -0.0722 -1.0251 25 1 -0.3633 -0.8517 0.5751 26 1 -0.3634 0.9239 0.4500 27 1 4.4814 -1.0209 0.1129 28 1 4.4811 0.6088 0.8288 29 1 4.2648 1.6022 -1.4329 30 1 4.2651 -0.0275 -2.1487 31 1 6.5213 -0.4413 -1.2078 32 1 6.5217 1.1883 -0.4918 33 1 7.6587 2.1923 -4.6975 34 1 9.0040 1.0251 -4.6722 35 1 9.9250 3.2948 -4.7214 36 1 8.9355 3.7605 -3.3166 37 1 11.0797 1.5873 -3.3269 38 1 11.2415 4.4242 -2.6542 39 1 13.9681 6.1808 -1.8749 40 1 10.7076 1.6089 -0.8664 41 1 9.3884 2.7845 -1.0853 42 1 9.5048 -0.0529 -2.2061 43 1 8.4280 0.5382 -0.9163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202075180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:39 Heat of formation + Delta-G solvation = -18.490798 kcal Electronic energy + Delta-G solvation = -20921.038728 eV Core-core repulsion = 17773.025749 eV Total energy + Delta-G solvation = -3148.012979 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.20593 -38.81271 -36.63035 -36.10770 -34.29226 -33.76154 -32.20458 -31.07614 -30.25295 -27.61603 -26.38154 -24.41861 -24.23280 -22.87813 -21.46673 -19.95985 -19.04294 -18.29953 -17.43950 -16.96431 -16.68134 -16.57894 -15.74553 -15.47702 -15.38539 -15.02920 -14.82298 -14.69284 -14.54118 -14.34430 -14.07422 -13.81059 -13.48106 -13.17724 -13.15189 -13.06254 -12.78497 -12.62268 -12.41258 -12.21425 -12.12859 -11.97319 -11.84360 -11.67891 -11.29575 -10.95110 -10.76753 -10.61367 -10.56180 -9.63901 -8.99496 -7.91946 -5.20817 1.49108 1.51773 1.57701 1.65780 1.72512 1.79340 2.09382 2.58047 3.37290 3.41172 3.57840 3.83226 3.92498 4.08579 4.09463 4.12444 4.21714 4.35185 4.42483 4.50272 4.63834 4.65981 4.69815 4.76200 4.81725 4.84503 4.85037 4.85159 4.88859 4.90313 5.05606 5.09966 5.16245 5.21501 5.31502 5.35251 5.51578 5.56472 5.66274 6.29395 6.48003 6.74311 7.20211 7.35298 8.11572 8.34291 9.31516 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033956 B = 0.002666 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.394974 B =10499.400240 C =10847.207309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.091 4.091 6 C -0.133 4.133 7 C 0.507 3.493 8 O -0.593 6.593 9 N -0.609 5.609 10 C 0.121 3.879 11 C -0.128 4.128 12 C 0.171 3.829 13 N -0.740 5.740 14 C -0.235 4.235 15 H 0.081 0.919 16 C -0.081 4.081 17 N -0.973 5.973 18 Si 0.972 3.028 19 H -0.278 1.278 20 H -0.301 1.301 21 H -0.275 1.275 22 C -0.142 4.142 23 C 0.114 3.886 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.129 0.871 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.369 0.631 39 H 0.249 0.751 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.086 0.914 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.023 -15.167 4.625 24.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.039 4.039 5 C -0.129 4.129 6 C -0.172 4.172 7 C 0.297 3.703 8 O -0.475 6.475 9 N -0.342 5.342 10 C -0.002 4.002 11 C -0.167 4.167 12 C 0.063 3.937 13 N -0.379 5.379 14 C -0.366 4.366 15 H 0.098 0.902 16 C -0.272 4.272 17 N -0.624 5.624 18 Si 0.802 3.198 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.201 1.201 22 C -0.183 4.183 23 C -0.008 4.008 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.147 0.853 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.200 0.800 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.256 -15.089 4.214 24.824 hybrid contribution 1.099 0.965 -0.018 1.463 sum -18.158 -14.123 4.197 23.383 Atomic orbital electron populations 1.19049 0.82723 1.04155 1.03976 1.23420 0.95477 1.01834 1.01250 1.23114 0.94949 1.01600 1.01817 1.18798 0.83182 1.03827 0.98120 1.21158 0.93689 1.01092 0.96989 1.21763 0.96293 1.04861 0.94265 1.21403 0.81369 0.77592 0.89893 1.90659 1.55906 1.51847 1.49053 1.48312 1.05892 1.61819 1.18137 1.21454 0.96923 0.95740 0.86070 1.22051 0.96505 0.98010 1.00091 1.20444 0.88890 0.90804 0.93551 1.42679 1.08369 1.04448 1.82362 1.19607 0.87993 0.92721 1.36313 0.90157 1.25579 1.02392 0.95236 1.04034 1.69829 1.35746 0.98893 1.57922 0.85224 0.80042 0.76166 0.78405 1.20463 1.22724 1.20124 1.22446 0.98373 0.98076 0.99381 1.21944 0.90286 0.96427 0.92157 0.89376 0.88729 0.89196 0.87310 0.87925 0.93314 0.92576 0.85291 0.86447 0.90359 0.89947 0.91311 0.93423 0.93237 0.79965 0.94237 0.91329 0.93607 0.89559 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.51 10.32 70.18 0.72 0.22 16 2 C -0.22 -4.41 14.13 31.12 0.44 -3.97 16 3 C -0.21 -4.45 13.34 31.13 0.42 -4.03 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.12 16 5 C -0.09 -1.71 4.46 30.60 0.14 -1.57 16 6 C -0.13 -2.10 4.05 29.85 0.12 -1.98 16 7 C 0.51 13.01 7.70 87.66 0.67 13.68 16 8 O -0.59 -20.36 15.39 -3.02 -0.05 -20.41 16 9 N -0.61 -15.12 2.98 -818.91 -2.44 -17.56 16 10 C 0.12 3.35 6.43 86.36 0.56 3.90 16 11 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 12 C 0.17 6.29 2.73 45.02 0.12 6.41 16 13 N -0.74 -36.20 5.12 -322.82 -1.65 -37.86 16 14 C -0.23 -12.55 9.93 84.03 0.83 -11.71 16 15 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 16 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 17 N -0.97 -59.36 13.06 21.65 0.28 -59.07 16 18 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 21 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 22 C -0.14 -4.29 5.66 30.66 0.17 -4.12 16 23 C 0.11 2.34 6.33 86.34 0.55 2.89 16 24 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.13 1.22 7.95 -2.39 -0.02 1.20 16 32 H 0.12 1.45 7.69 -2.39 -0.02 1.43 16 33 H 0.08 2.34 7.01 -2.39 -0.02 2.32 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.81 8.08 -2.39 -0.02 1.79 16 38 H 0.37 19.94 7.80 -92.71 -0.72 19.22 16 39 H 0.25 14.85 8.31 -92.70 -0.77 14.07 16 40 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.09 1.53 8.14 -2.39 -0.02 1.52 16 43 H 0.12 1.57 5.95 -2.39 -0.01 1.56 16 Total: -1.00 -73.00 355.63 3.98 -69.02 By element: Atomic # 1 Polarization: 26.63 SS G_CDS: 0.26 Total: 26.89 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 5.55 Total: -8.25 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -3.81 Total: -114.49 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -73.00 3.98 -69.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202075180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.529 kcal (2) G-P(sol) polarization free energy of solvation -72.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds