Wall clock time and date at job start Tue Mar 31 2020 00:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46867 * 2 1 4 4 C 1.41379 * 126.80144 * 125.00484 * 3 2 1 5 5 C 1.35452 * 103.98523 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.77565 * 179.97438 * 5 4 3 7 7 N 1.46891 * 109.46895 * 89.99937 * 6 5 4 8 8 C 1.46900 * 110.99843 * 169.99833 * 7 6 5 9 9 C 1.50699 * 109.47331 * 195.42364 * 8 7 6 10 10 H 1.07998 * 120.00205 * 5.91543 * 9 8 7 11 11 C 1.37884 * 120.00305 * 185.91134 * 9 8 7 12 12 N 1.31515 * 119.99397 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00173 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46891 * 89.99997 * 13 11 9 15 15 H 1.48505 * 109.47214 * 209.99823 * 13 11 9 16 16 H 1.48502 * 109.47257 * 329.99748 * 13 11 9 17 17 C 1.46901 * 111.00334 * 293.95137 * 7 6 5 18 18 C 1.55239 * 110.46874 * 260.88378 * 17 7 6 19 19 C 1.54893 * 102.58898 * 203.38990 * 18 17 7 20 20 C 1.54266 * 104.30771 * 37.93461 * 19 18 17 21 21 C 1.53874 * 106.60195 * 336.31906 * 20 19 18 22 22 O 1.34045 * 106.44482 * 0.23559 * 5 4 3 23 23 N 1.20921 * 111.56836 * 359.57113 * 22 5 4 24 24 H 1.08993 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47068 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47147 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47068 * 239.99748 * 2 1 3 28 28 H 1.08992 * 109.46857 * 119.99498 * 2 1 3 29 29 H 1.07996 * 128.00937 * 0.02843 * 4 3 2 30 30 H 1.09002 * 109.46835 * 329.99715 * 6 5 4 31 31 H 1.09000 * 109.46861 * 209.99847 * 6 5 4 32 32 H 1.09002 * 109.47409 * 315.42515 * 8 7 6 33 33 H 1.09003 * 109.47176 * 75.42474 * 8 7 6 34 34 H 0.97003 * 119.99473 * 179.97438 * 12 11 9 35 35 H 1.08997 * 110.43176 * 23.52956 * 17 7 6 36 36 H 1.09001 * 110.89447 * 85.10080 * 18 17 7 37 37 H 1.09003 * 110.76959 * 321.62390 * 18 17 7 38 38 H 1.08998 * 110.48377 * 279.18708 * 19 18 17 39 39 H 1.08994 * 110.48602 * 156.67477 * 19 18 17 40 40 H 1.09000 * 110.03590 * 95.61085 * 20 19 18 41 41 H 1.09007 * 110.02656 * 216.98881 * 20 19 18 42 42 H 1.09001 * 110.02950 * 119.28755 * 21 20 19 43 43 H 1.09000 * 110.03715 * 240.66816 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9269 2.0029 0.9273 5 6 3.0584 3.2807 0.4974 6 6 3.9036 4.3605 1.1226 7 7 5.2480 4.3338 0.5315 8 6 6.0252 5.5123 0.9379 9 6 7.2270 5.6556 0.0400 10 1 7.3463 5.0015 -0.8110 11 6 8.1742 6.6220 0.3048 12 7 8.0285 7.4189 1.3408 13 14 9.6634 6.8001 -0.8087 14 1 9.3530 7.7568 -1.9011 15 1 10.8143 7.3071 -0.0188 16 1 10.0069 5.4780 -1.3912 17 6 5.9522 3.0928 0.8807 18 6 6.9256 3.3358 2.0653 19 6 7.9593 2.1953 1.8924 20 6 8.1446 2.0771 0.3655 21 6 6.8685 2.6476 -0.2778 22 8 2.2841 3.3966 -0.5906 23 7 1.7281 2.3555 -0.8535 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.3966 1.5368 1.7807 30 1 3.9754 4.1893 2.1967 31 1 3.4453 5.3323 0.9394 32 1 5.4029 6.4035 0.8570 33 1 6.3550 5.3918 1.9698 34 1 8.6951 8.0985 1.5273 35 1 5.2385 2.3065 1.1263 36 1 6.4067 3.2454 3.0196 37 1 7.4066 4.3099 1.9767 38 1 7.5711 1.2632 2.3030 39 1 8.9019 2.4590 2.3718 40 1 9.0129 2.6550 0.0488 41 1 8.2698 1.0313 0.0845 42 1 7.1175 3.5024 -0.9066 43 1 6.3740 1.8790 -0.8718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203218893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:03 Heat of formation + Delta-G solvation = 62.490887 kcal Electronic energy + Delta-G solvation = -22596.672887 eV Core-core repulsion = 19452.171537 eV Total energy + Delta-G solvation = -3144.501350 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.61712 -38.64599 -35.37889 -34.89106 -32.98221 -31.72065 -30.91376 -28.08575 -27.57563 -27.22978 -24.69823 -23.99518 -22.75774 -21.93986 -19.72592 -19.60659 -18.53215 -17.30209 -17.02048 -16.34136 -15.29785 -15.14224 -14.74763 -14.53082 -14.39935 -13.89603 -13.77999 -13.45772 -12.99476 -12.65945 -12.51946 -12.21975 -11.89879 -11.60921 -11.58275 -11.30383 -11.02602 -10.96355 -10.78562 -10.66488 -10.54058 -10.36860 -10.34907 -10.14834 -9.80722 -9.60394 -9.36655 -9.09889 -8.91528 -8.42970 -7.29674 -6.05697 -4.05593 1.75252 2.43786 3.30587 3.37499 3.39324 3.41824 4.29221 4.40043 4.55721 4.84629 5.06400 5.15887 5.21520 5.28766 5.31547 5.35176 5.40945 5.49214 5.60606 5.66711 5.70363 5.85447 5.89630 5.96396 5.97635 6.13414 6.19748 6.21952 6.27199 6.28229 6.39332 6.51582 6.58555 6.66039 6.93783 6.95911 7.08630 7.30040 7.42953 7.89006 8.03792 8.10118 8.46130 8.54528 9.03118 9.58124 11.04515 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.004815 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.092590 B = 5813.754457 C = 6299.137712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.015 3.985 4 C -0.243 4.243 5 C 0.011 3.989 6 C 0.124 3.876 7 N -0.525 5.525 8 C 0.183 3.817 9 C -0.500 4.500 10 H 0.073 0.927 11 C 0.057 3.943 12 N -0.899 5.899 13 Si 0.891 3.109 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.273 1.273 17 C 0.089 3.911 18 C -0.164 4.164 19 C -0.116 4.116 20 C -0.117 4.117 21 C -0.116 4.116 22 O 0.103 5.897 23 N -0.372 5.372 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.165 0.835 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.047 0.953 42 H 0.098 0.902 43 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.192 -12.540 1.985 15.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.266 4.266 5 C -0.054 4.054 6 C -0.005 4.005 7 N -0.250 5.250 8 C 0.059 3.941 9 C -0.539 4.539 10 H 0.091 0.909 11 C -0.144 4.144 12 N -0.538 5.538 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.198 1.198 17 C -0.020 4.020 18 C -0.202 4.202 19 C -0.154 4.154 20 C -0.155 4.155 21 C -0.154 4.154 22 O 0.038 5.962 23 N -0.077 5.077 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.182 0.818 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.116 0.884 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.952 -12.299 0.467 15.219 hybrid contribution 1.447 -0.142 1.054 1.796 sum -7.505 -12.440 1.521 14.608 Atomic orbital electron populations 1.21721 0.94363 1.01813 1.02553 1.19892 0.96294 0.88525 1.03331 1.23462 0.99124 0.98101 0.93713 1.22342 1.05154 0.94200 1.04856 1.24670 0.94768 0.97529 0.88405 1.20570 0.90191 0.94783 0.94958 1.62300 1.00002 1.04444 1.58232 1.20059 0.92455 0.85495 0.96084 1.21272 1.04649 1.16386 1.11563 0.90945 1.24941 0.98250 0.95815 0.95388 1.69945 1.35767 1.20454 1.27676 0.86601 0.82384 0.78483 0.80638 1.20709 1.21418 1.19759 1.22486 0.94075 0.91351 0.94064 1.23477 0.97795 1.02237 0.96728 1.22180 0.99154 0.97868 0.96200 1.22025 0.99017 0.99085 0.95385 1.22328 0.94188 1.00764 0.98078 1.84822 1.44786 1.28943 1.37616 1.73775 1.18150 0.93402 1.22358 0.92077 0.92603 0.92118 0.90200 0.89897 0.81778 0.92155 0.88795 0.95715 0.96385 0.92960 0.92109 0.93799 0.85897 0.93302 0.92527 0.91960 0.93467 0.88406 0.94082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.88 37.16 0.37 -1.02 16 2 C -0.04 -0.45 6.53 -27.88 -0.18 -0.63 16 3 C 0.01 0.21 6.59 -82.10 -0.54 -0.33 16 4 C -0.24 -3.46 9.47 -39.38 -0.37 -3.83 16 5 C 0.01 0.17 6.50 -35.30 -0.23 -0.06 16 6 C 0.12 2.07 5.47 -4.98 -0.03 2.04 16 7 N -0.53 -10.45 4.38 -227.31 -0.99 -11.45 16 8 C 0.18 4.30 4.26 -4.98 -0.02 4.28 16 9 C -0.50 -12.85 7.32 -34.44 -0.25 -13.10 16 10 H 0.07 1.87 4.95 -52.49 -0.26 1.61 16 11 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 12 N -0.90 -25.09 13.29 55.43 0.74 -24.35 16 13 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.09 1.63 2.71 -65.86 -0.18 1.45 16 18 C -0.16 -3.04 5.34 -24.55 -0.13 -3.17 16 19 C -0.12 -1.90 6.82 -25.07 -0.17 -2.07 16 20 C -0.12 -1.98 6.80 -25.61 -0.17 -2.16 16 21 C -0.12 -2.16 6.11 -25.61 -0.16 -2.31 16 22 O 0.10 1.80 11.20 17.16 0.19 1.99 16 23 N -0.37 -6.19 12.06 33.42 0.40 -5.78 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.16 1.99 7.68 -52.49 -0.40 1.58 16 30 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 31 H 0.09 1.53 7.87 -51.93 -0.41 1.12 16 32 H 0.02 0.63 7.82 -51.93 -0.41 0.22 16 33 H 0.02 0.45 5.47 -51.93 -0.28 0.17 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.06 1.02 5.26 -51.93 -0.27 0.75 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.12 2.76 4.53 -51.93 -0.24 2.53 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.10 2.10 4.83 -51.93 -0.25 1.85 16 43 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 335.43 15.07 5.05 5.05 Total: -1.00 -27.73 335.43 -8.52 -36.25 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.73 Total: 1.93 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.17 Total: -19.47 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.14 Total: -41.59 kcal Atomic # 8 Polarization: 1.80 SS G_CDS: 0.19 Total: 1.99 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.73 -8.52 -36.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203218893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.745 kcal (2) G-P(sol) polarization free energy of solvation -27.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds