Wall clock time and date at job start Tue Mar 31 2020 00:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46867 * 2 1 4 4 C 1.41379 * 126.80144 * 125.00484 * 3 2 1 5 5 C 1.35452 * 103.98523 * 180.02562 * 4 3 2 6 6 C 1.50703 * 126.77565 * 179.97438 * 5 4 3 7 7 N 1.46891 * 109.46895 * 89.99937 * 6 5 4 8 8 C 1.46900 * 110.99843 * 169.99833 * 7 6 5 9 9 C 1.50699 * 109.47331 * 195.42364 * 8 7 6 10 10 H 1.07998 * 120.00205 * 5.91543 * 9 8 7 11 11 C 1.37884 * 120.00305 * 185.91134 * 9 8 7 12 12 N 1.31515 * 119.99397 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00173 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.46891 * 89.99997 * 13 11 9 15 15 H 1.48505 * 109.47214 * 209.99823 * 13 11 9 16 16 H 1.48502 * 109.47257 * 329.99748 * 13 11 9 17 17 C 1.46901 * 111.00334 * 293.95137 * 7 6 5 18 18 C 1.55239 * 110.46874 * 260.88378 * 17 7 6 19 19 C 1.54893 * 102.58898 * 203.38990 * 18 17 7 20 20 C 1.54266 * 104.30771 * 37.93461 * 19 18 17 21 21 C 1.53874 * 106.60195 * 336.31906 * 20 19 18 22 22 O 1.34045 * 106.44482 * 0.23559 * 5 4 3 23 23 N 1.20921 * 111.56836 * 359.57113 * 22 5 4 24 24 H 1.08993 * 109.47413 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47068 * 300.00252 * 1 2 3 26 26 H 1.09004 * 109.47147 * 59.99903 * 1 2 3 27 27 H 1.09002 * 109.47068 * 239.99748 * 2 1 3 28 28 H 1.08992 * 109.46857 * 119.99498 * 2 1 3 29 29 H 1.07996 * 128.00937 * 0.02843 * 4 3 2 30 30 H 1.09002 * 109.46835 * 329.99715 * 6 5 4 31 31 H 1.09000 * 109.46861 * 209.99847 * 6 5 4 32 32 H 1.09002 * 109.47409 * 315.42515 * 8 7 6 33 33 H 1.09003 * 109.47176 * 75.42474 * 8 7 6 34 34 H 0.97003 * 119.99473 * 179.97438 * 12 11 9 35 35 H 1.08997 * 110.43176 * 23.52956 * 17 7 6 36 36 H 1.09001 * 110.89447 * 85.10080 * 18 17 7 37 37 H 1.09003 * 110.76959 * 321.62390 * 18 17 7 38 38 H 1.08998 * 110.48377 * 279.18708 * 19 18 17 39 39 H 1.08994 * 110.48602 * 156.67477 * 19 18 17 40 40 H 1.09000 * 110.03590 * 95.61085 * 20 19 18 41 41 H 1.09007 * 110.02656 * 216.98881 * 20 19 18 42 42 H 1.09001 * 110.02950 * 119.28755 * 21 20 19 43 43 H 1.09000 * 110.03715 * 240.66816 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9269 2.0029 0.9273 5 6 3.0584 3.2807 0.4974 6 6 3.9036 4.3605 1.1226 7 7 5.2480 4.3338 0.5315 8 6 6.0252 5.5123 0.9379 9 6 7.2270 5.6556 0.0400 10 1 7.3463 5.0015 -0.8110 11 6 8.1742 6.6220 0.3048 12 7 8.0285 7.4189 1.3408 13 14 9.6634 6.8001 -0.8087 14 1 9.3530 7.7568 -1.9011 15 1 10.8143 7.3071 -0.0188 16 1 10.0069 5.4780 -1.3912 17 6 5.9522 3.0928 0.8807 18 6 6.9256 3.3358 2.0653 19 6 7.9593 2.1953 1.8924 20 6 8.1446 2.0771 0.3655 21 6 6.8685 2.6476 -0.2778 22 8 2.2841 3.3966 -0.5906 23 7 1.7281 2.3555 -0.8535 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 3.3966 1.5368 1.7807 30 1 3.9754 4.1893 2.1967 31 1 3.4453 5.3323 0.9394 32 1 5.4029 6.4035 0.8570 33 1 6.3550 5.3918 1.9698 34 1 8.6951 8.0985 1.5273 35 1 5.2385 2.3065 1.1263 36 1 6.4067 3.2454 3.0196 37 1 7.4066 4.3099 1.9767 38 1 7.5711 1.2632 2.3030 39 1 8.9019 2.4590 2.3718 40 1 9.0129 2.6550 0.0488 41 1 8.2698 1.0313 0.0845 42 1 7.1175 3.5024 -0.9066 43 1 6.3740 1.8790 -0.8718 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203218893.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:15:02 Heat of formation + Delta-G solvation = 47.507803 kcal Electronic energy + Delta-G solvation = -22597.322602 eV Core-core repulsion = 19452.171537 eV Total energy + Delta-G solvation = -3145.151065 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.80122 -40.15854 -36.38971 -36.29949 -34.84289 -33.08219 -31.99019 -29.55061 -29.27747 -28.68026 -26.06363 -25.14759 -24.04858 -23.52105 -21.12467 -20.80601 -19.97033 -18.70383 -18.46671 -17.85035 -16.84233 -16.74251 -16.23228 -15.82218 -15.44038 -15.25734 -14.92559 -14.70543 -14.45024 -14.22285 -13.83987 -13.46695 -13.28227 -13.06292 -12.74614 -12.72746 -12.51966 -12.42663 -12.35847 -12.05569 -11.89167 -11.84999 -11.71419 -11.63759 -11.29799 -10.98065 -10.89027 -10.68845 -10.48434 -10.30644 -8.89844 -8.10520 -6.15123 0.52163 1.33674 1.41949 1.44203 1.52875 2.18879 2.45627 3.23389 3.28381 3.31775 3.53972 3.92747 3.96662 4.12344 4.19972 4.24009 4.30053 4.33842 4.43705 4.51577 4.59977 4.71380 4.78586 4.80796 4.83676 4.91910 4.97748 4.99679 5.06918 5.13267 5.17761 5.21712 5.23360 5.31691 5.35705 5.36485 5.52450 5.58274 5.78715 5.94465 6.20534 6.42233 6.67177 7.01093 7.35087 7.52077 8.99352 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023842 B = 0.004815 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.092590 B = 5813.754457 C = 6299.137712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 C 0.021 3.979 4 C -0.230 4.230 5 C -0.005 4.005 6 C 0.127 3.873 7 N -0.539 5.539 8 C 0.200 3.800 9 C -0.500 4.500 10 H 0.069 0.931 11 C 0.011 3.989 12 N -0.931 5.931 13 Si 0.945 3.055 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.266 1.266 17 C 0.092 3.908 18 C -0.163 4.163 19 C -0.110 4.110 20 C -0.115 4.115 21 C -0.117 4.117 22 O 0.073 5.927 23 N -0.396 5.396 24 H 0.086 0.914 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.193 0.807 30 H 0.079 0.921 31 H 0.087 0.913 32 H -0.003 1.003 33 H 0.007 0.993 34 H 0.260 0.740 35 H 0.085 0.915 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.389 -15.576 2.511 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.252 4.252 5 C -0.069 4.069 6 C -0.002 4.002 7 N -0.263 5.263 8 C 0.074 3.926 9 C -0.538 4.538 10 H 0.087 0.913 11 C -0.187 4.187 12 N -0.573 5.573 13 Si 0.772 3.228 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.017 4.017 18 C -0.202 4.202 19 C -0.148 4.148 20 C -0.153 4.153 21 C -0.155 4.155 22 O 0.013 5.987 23 N -0.105 5.105 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.210 0.790 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.015 0.985 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.145 -15.324 0.988 17.873 hybrid contribution 1.420 0.734 0.883 1.826 sum -7.725 -14.590 1.871 16.615 Atomic orbital electron populations 1.21701 0.93719 1.03181 1.01548 1.20134 0.96826 0.86262 1.05004 1.24139 0.97956 0.99233 0.92476 1.22700 1.04304 0.93133 1.05078 1.24575 0.95368 0.98111 0.88812 1.20525 0.88527 0.95257 0.95913 1.62124 1.01096 1.03931 1.59125 1.19696 0.91667 0.86111 0.95090 1.21554 1.05208 1.15695 1.11381 0.91306 1.25612 1.00731 0.95803 0.96548 1.70051 1.36700 1.21260 1.29271 0.85738 0.79590 0.78502 0.78991 1.20713 1.21207 1.19057 1.22558 0.94331 0.90964 0.93826 1.23323 0.98385 1.00917 0.97530 1.22177 0.98576 0.98234 0.95792 1.22012 0.97209 1.00331 0.95735 1.22286 0.95368 0.99828 0.98010 1.84795 1.45698 1.29758 1.38487 1.73791 1.19201 0.93848 1.23700 0.89529 0.92858 0.93902 0.89490 0.87167 0.79031 0.90289 0.89424 0.98468 0.97501 0.93115 0.89698 0.92342 0.90300 0.90168 0.92601 0.93859 0.90580 0.91866 0.92903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.88 71.98 0.71 -1.61 16 2 C -0.04 -0.78 6.53 29.85 0.19 -0.58 16 3 C 0.02 0.55 6.59 43.58 0.29 0.84 16 4 C -0.23 -5.87 9.47 22.40 0.21 -5.66 16 5 C 0.00 -0.14 6.50 25.04 0.16 0.02 16 6 C 0.13 4.18 5.47 85.56 0.47 4.65 16 7 N -0.54 -21.52 4.38 -873.07 -3.82 -25.34 16 8 C 0.20 9.68 4.26 85.56 0.36 10.05 16 9 C -0.50 -26.40 7.32 25.60 0.19 -26.22 16 10 H 0.07 3.66 4.95 -2.91 -0.01 3.64 16 11 C 0.01 0.59 5.46 84.66 0.46 1.05 16 12 N -0.93 -53.48 13.29 21.45 0.28 -53.20 16 13 Si 0.95 43.51 29.54 68.60 2.03 45.54 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 15 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 16 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 17 C 0.09 3.21 2.71 46.11 0.12 3.33 16 18 C -0.16 -5.83 5.34 32.01 0.17 -5.66 16 19 C -0.11 -3.30 6.82 31.67 0.22 -3.09 16 20 C -0.11 -3.65 6.80 31.32 0.21 -3.43 16 21 C -0.12 -4.21 6.11 31.32 0.19 -4.02 16 22 O 0.07 2.55 11.20 71.59 0.80 3.35 16 23 N -0.40 -12.87 12.06 -49.55 -0.60 -13.46 16 24 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.19 3.72 7.68 -2.91 -0.02 3.70 16 30 H 0.08 2.31 8.12 -2.39 -0.02 2.29 16 31 H 0.09 2.95 7.87 -2.39 -0.02 2.93 16 32 H 0.00 -0.14 7.82 -2.39 -0.02 -0.16 16 33 H 0.01 0.38 5.47 -2.39 -0.01 0.36 16 34 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 35 H 0.09 2.56 5.26 -2.39 -0.01 2.55 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.08 3.59 4.53 -2.39 -0.01 3.58 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.97 8.14 -2.38 -0.02 1.96 16 42 H 0.06 2.73 4.83 -2.39 -0.01 2.72 16 43 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -61.52 335.43 3.66 -57.86 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.00 Total: 15.58 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 3.97 Total: -30.33 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -4.13 Total: -92.00 kcal Atomic # 8 Polarization: 2.55 SS G_CDS: 0.80 Total: 3.35 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -61.52 3.66 -57.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203218893.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.369 kcal (2) G-P(sol) polarization free energy of solvation -61.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds