Wall clock time and date at job start Mon Mar 30 2020 23:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.57777 * 2 1 4 4 C 1.34520 * 106.83976 * 180.16611 * 3 2 1 5 5 C 1.50699 * 125.78855 * 179.88851 * 4 3 2 6 6 N 1.46908 * 109.46767 * 89.71696 * 5 4 3 7 7 C 1.46954 * 110.99966 * 66.20188 * 6 5 4 8 8 C 1.53057 * 109.36263 * 183.18687 * 7 6 5 9 9 N 1.46956 * 109.36162 * 301.59585 * 8 7 6 10 10 C 1.46899 * 110.99677 * 183.18894 * 9 8 7 11 11 C 1.50698 * 109.47292 * 170.00200 * 10 9 8 12 12 H 1.07998 * 119.99743 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00039 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00084 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46853 * 90.00321 * 15 13 11 17 17 H 1.48499 * 109.47441 * 210.00165 * 15 13 11 18 18 H 1.48497 * 109.47160 * 330.00512 * 15 13 11 19 19 C 1.46954 * 110.88042 * 59.32472 * 9 8 7 20 20 C 1.46956 * 110.99532 * 189.99783 * 6 5 4 21 21 O 1.34302 * 108.41820 * 359.62480 * 4 3 2 22 22 C 1.34296 * 109.47998 * 0.24639 * 21 4 3 23 23 C 1.50702 * 125.79569 * 180.02562 * 22 21 4 24 24 H 1.09000 * 109.47121 * 270.24272 * 1 2 3 25 25 H 1.08996 * 109.47093 * 30.25167 * 1 2 3 26 26 H 1.09003 * 109.46884 * 150.24808 * 1 2 3 27 27 H 1.07995 * 126.58378 * 0.03039 * 3 2 1 28 28 H 1.08997 * 109.47356 * 329.72087 * 5 4 3 29 29 H 1.09003 * 109.47008 * 209.71418 * 5 4 3 30 30 H 1.08997 * 109.49355 * 63.21813 * 7 6 5 31 31 H 1.09004 * 109.48943 * 303.15264 * 7 6 5 32 32 H 1.09002 * 109.48707 * 181.63135 * 8 7 6 33 33 H 1.09002 * 109.48655 * 61.56567 * 8 7 6 34 34 H 1.09003 * 109.47063 * 289.99903 * 10 9 8 35 35 H 1.09002 * 109.47208 * 50.00081 * 10 9 8 36 36 H 0.96996 * 120.00282 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.49355 * 60.64341 * 19 9 8 38 38 H 1.09003 * 109.49032 * 180.68883 * 19 9 8 39 39 H 1.09002 * 109.48908 * 56.84799 * 20 6 5 40 40 H 1.09002 * 109.49369 * 296.77670 * 20 6 5 41 41 H 1.09007 * 109.46796 * 359.96986 * 23 22 21 42 42 H 1.08992 * 109.47790 * 119.96757 * 23 22 21 43 43 H 1.08997 * 109.47386 * 239.97448 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6811 -0.0037 5 6 4.8580 1.5341 -0.0075 6 7 5.2619 1.8170 1.3763 7 6 5.6870 0.5889 2.0624 8 6 6.0228 0.9123 3.5202 9 7 7.0829 1.9293 3.5619 10 6 7.4868 2.2122 4.9456 11 6 8.7291 3.0652 4.9419 12 1 9.1743 3.3666 4.0053 13 6 9.2979 3.4599 6.1342 14 7 10.3824 4.2039 6.1310 15 14 8.5282 2.9380 7.7543 16 1 9.1164 1.6452 8.1879 17 1 8.7942 3.9734 8.7851 18 1 7.0622 2.7804 7.5778 19 6 6.6578 3.1574 2.8758 20 6 6.3220 2.8339 1.4180 21 8 3.5848 -0.6616 0.0024 22 6 2.3087 -1.0802 0.0046 23 6 1.8522 -2.5164 0.0117 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 2.0367 2.1690 0.0005 28 1 4.6537 2.4713 -0.5252 29 1 5.6612 1.0038 -0.5193 30 1 6.5690 0.1825 1.5676 31 1 4.8808 -0.1440 2.0289 32 1 6.3661 0.0084 4.0234 33 1 5.1335 1.2932 4.0224 34 1 6.6836 2.7424 5.4574 35 1 7.6911 1.2750 5.4634 36 1 10.7824 4.4820 6.9698 37 1 5.7758 3.5637 3.3706 38 1 7.4638 3.8904 2.9096 39 1 5.9787 3.7378 0.9147 40 1 7.2113 2.4531 0.9158 41 1 2.7216 -3.1739 0.0144 42 1 1.2530 -2.7028 0.9029 43 1 1.2520 -2.7113 -0.8770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204534975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:17 Heat of formation + Delta-G solvation = 22.271073 kcal Electronic energy + Delta-G solvation = -21760.199957 eV Core-core repulsion = 18613.954545 eV Total energy + Delta-G solvation = -3146.245412 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.67115 -38.79940 -35.43647 -34.38722 -32.67771 -31.99027 -30.49892 -29.66428 -28.45194 -26.98795 -24.98840 -23.14287 -23.09334 -21.40518 -20.95748 -19.34343 -19.20652 -16.81659 -16.60614 -16.45594 -15.52143 -14.98174 -14.63406 -14.43087 -14.34548 -13.87331 -13.68300 -13.54390 -13.31535 -13.20919 -13.06086 -12.72967 -12.58798 -12.48236 -12.32917 -12.03213 -11.82785 -11.47281 -11.33920 -10.97256 -10.82385 -10.61306 -10.40055 -10.10252 -9.82373 -9.56761 -9.25906 -8.56360 -8.36391 -8.14859 -7.35611 -6.04922 -4.02213 1.63069 2.50292 2.84226 3.29385 3.36732 3.39618 4.12119 4.42885 4.50785 4.73364 4.78522 4.81748 5.02505 5.13403 5.19544 5.20764 5.27557 5.35844 5.40768 5.45601 5.48426 5.52654 5.68198 5.72543 5.75527 5.79550 5.85821 5.96560 6.00713 6.11936 6.19882 6.33324 6.49915 6.54052 6.62923 6.84375 6.97802 7.07214 7.16283 7.22838 7.60400 7.91762 8.05929 8.66376 9.02854 9.57078 11.08144 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.003418 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.619453 B = 8190.682823 C = 8518.407244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.183 4.183 3 C -0.189 4.189 4 C 0.001 3.999 5 C 0.134 3.866 6 N -0.536 5.536 7 C 0.062 3.938 8 C 0.055 3.945 9 N -0.530 5.530 10 C 0.162 3.838 11 C -0.509 4.509 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.875 3.125 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C 0.067 3.933 20 C 0.058 3.942 21 O -0.174 6.174 22 C -0.022 4.022 23 C -0.070 4.070 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.146 0.854 28 H 0.103 0.897 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.031 0.969 34 H -0.011 1.011 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.030 0.970 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.513 -9.500 -13.989 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.184 4.184 3 C -0.209 4.209 4 C -0.049 4.049 5 C 0.007 3.993 6 N -0.262 5.262 7 C -0.066 4.066 8 C -0.074 4.074 9 N -0.254 5.254 10 C 0.036 3.964 11 C -0.547 4.547 12 H 0.098 0.902 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.702 3.298 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.061 4.061 20 C -0.069 4.069 21 O -0.071 6.071 22 C -0.072 4.072 23 C -0.127 4.127 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.163 0.837 28 H 0.121 0.879 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.007 0.993 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.048 0.952 38 H 0.112 0.888 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.110 -9.590 -13.855 24.736 hybrid contribution -0.418 -0.081 1.034 1.118 sum -18.527 -9.671 -12.821 24.519 Atomic orbital electron populations 1.20134 0.89462 1.02177 1.01888 1.20190 0.96904 0.92271 1.09084 1.21383 0.91577 0.99626 1.08266 1.22190 0.96994 0.80081 1.05624 1.20485 0.90956 0.96672 0.91209 1.62234 1.39944 1.10832 1.13164 1.22169 0.98573 0.90925 0.94962 1.22102 0.93732 0.96825 0.94716 1.62113 1.35285 1.08990 1.19051 1.20156 0.95978 0.96145 0.84107 1.21026 1.08565 1.30409 0.94714 0.90162 1.24896 0.94730 0.94834 0.98864 1.69893 1.20456 1.36724 1.26923 0.86862 0.80268 0.78625 0.84025 1.20161 1.21195 1.19262 1.22028 0.99396 0.93241 0.91459 1.22268 0.91875 0.94194 0.98561 1.83971 1.28836 1.22543 1.71767 1.22146 0.80938 0.96700 1.07448 1.20246 1.01585 0.87674 1.03169 0.91626 0.91705 0.91973 0.83655 0.87881 0.93199 0.94003 0.91132 0.90983 0.95122 0.99290 0.95840 0.92669 0.95179 0.88772 0.90671 0.93817 0.90715 0.89923 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.18 36.01 0.37 -0.29 16 2 C -0.18 -2.09 6.16 -104.74 -0.65 -2.73 16 3 C -0.19 -2.33 10.77 -39.70 -0.43 -2.76 16 4 C 0.00 0.02 5.90 -35.62 -0.21 -0.19 16 5 C 0.13 1.67 5.50 -4.97 -0.03 1.64 16 6 N -0.54 -8.06 4.70 -235.90 -1.11 -9.17 16 7 C 0.06 0.99 5.44 -3.77 -0.02 0.97 16 8 C 0.06 1.02 5.61 -3.76 -0.02 0.99 16 9 N -0.53 -11.41 4.70 -235.90 -1.11 -12.52 16 10 C 0.16 4.02 3.79 -4.98 -0.02 4.01 16 11 C -0.51 -14.53 9.03 -34.44 -0.31 -14.84 16 12 H 0.08 2.48 7.38 -52.49 -0.39 2.09 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 14 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 15 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 19 C 0.07 1.31 5.43 -3.77 -0.02 1.29 16 20 C 0.06 0.91 5.61 -3.76 -0.02 0.89 16 21 O -0.17 -2.36 9.95 5.73 0.06 -2.31 16 22 C -0.02 -0.26 7.32 -35.62 -0.26 -0.52 16 23 C -0.07 -0.53 9.94 36.01 0.36 -0.17 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 27 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.10 1.07 8.03 -51.93 -0.42 0.65 16 29 H 0.05 0.60 8.12 -51.93 -0.42 0.18 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.09 6.65 -51.93 -0.35 0.75 16 32 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H -0.01 -0.27 7.18 -51.93 -0.37 -0.64 16 35 H 0.02 0.58 7.45 -51.93 -0.39 0.20 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 2.00 6.79 -51.93 -0.35 1.65 16 39 H 0.07 0.99 8.07 -51.93 -0.42 0.57 16 40 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 42 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -31.98 342.93 -9.57 -41.55 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -7.33 Total: -3.03 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -1.36 Total: -9.83 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: -1.44 Total: -48.58 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.06 Total: -2.31 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.98 -9.57 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204534975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.818 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds