Wall clock time and date at job start Mon Mar 30 2020 23:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41382 * 126.57777 * 2 1 4 4 C 1.34520 * 106.83976 * 180.16611 * 3 2 1 5 5 C 1.50699 * 125.78855 * 179.88851 * 4 3 2 6 6 N 1.46908 * 109.46767 * 89.71696 * 5 4 3 7 7 C 1.46954 * 110.99966 * 66.20188 * 6 5 4 8 8 C 1.53057 * 109.36263 * 183.18687 * 7 6 5 9 9 N 1.46956 * 109.36162 * 301.59585 * 8 7 6 10 10 C 1.46899 * 110.99677 * 183.18894 * 9 8 7 11 11 C 1.50698 * 109.47292 * 170.00200 * 10 9 8 12 12 H 1.07998 * 119.99743 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00183 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00039 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00084 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46853 * 90.00321 * 15 13 11 17 17 H 1.48499 * 109.47441 * 210.00165 * 15 13 11 18 18 H 1.48497 * 109.47160 * 330.00512 * 15 13 11 19 19 C 1.46954 * 110.88042 * 59.32472 * 9 8 7 20 20 C 1.46956 * 110.99532 * 189.99783 * 6 5 4 21 21 O 1.34302 * 108.41820 * 359.62480 * 4 3 2 22 22 C 1.34296 * 109.47998 * 0.24639 * 21 4 3 23 23 C 1.50702 * 125.79569 * 180.02562 * 22 21 4 24 24 H 1.09000 * 109.47121 * 270.24272 * 1 2 3 25 25 H 1.08996 * 109.47093 * 30.25167 * 1 2 3 26 26 H 1.09003 * 109.46884 * 150.24808 * 1 2 3 27 27 H 1.07995 * 126.58378 * 0.03039 * 3 2 1 28 28 H 1.08997 * 109.47356 * 329.72087 * 5 4 3 29 29 H 1.09003 * 109.47008 * 209.71418 * 5 4 3 30 30 H 1.08997 * 109.49355 * 63.21813 * 7 6 5 31 31 H 1.09004 * 109.48943 * 303.15264 * 7 6 5 32 32 H 1.09002 * 109.48707 * 181.63135 * 8 7 6 33 33 H 1.09002 * 109.48655 * 61.56567 * 8 7 6 34 34 H 1.09003 * 109.47063 * 289.99903 * 10 9 8 35 35 H 1.09002 * 109.47208 * 50.00081 * 10 9 8 36 36 H 0.96996 * 120.00282 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.49355 * 60.64341 * 19 9 8 38 38 H 1.09003 * 109.49032 * 180.68883 * 19 9 8 39 39 H 1.09002 * 109.48908 * 56.84799 * 20 6 5 40 40 H 1.09002 * 109.49369 * 296.77670 * 20 6 5 41 41 H 1.09007 * 109.46796 * 359.96986 * 23 22 21 42 42 H 1.08992 * 109.47790 * 119.96757 * 23 22 21 43 43 H 1.08997 * 109.47386 * 239.97448 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6811 -0.0037 5 6 4.8580 1.5341 -0.0075 6 7 5.2619 1.8170 1.3763 7 6 5.6870 0.5889 2.0624 8 6 6.0228 0.9123 3.5202 9 7 7.0829 1.9293 3.5619 10 6 7.4868 2.2122 4.9456 11 6 8.7291 3.0652 4.9419 12 1 9.1743 3.3666 4.0053 13 6 9.2979 3.4599 6.1342 14 7 10.3824 4.2039 6.1310 15 14 8.5282 2.9380 7.7543 16 1 9.1164 1.6452 8.1879 17 1 8.7942 3.9734 8.7851 18 1 7.0622 2.7804 7.5778 19 6 6.6578 3.1574 2.8758 20 6 6.3220 2.8339 1.4180 21 8 3.5848 -0.6616 0.0024 22 6 2.3087 -1.0802 0.0046 23 6 1.8522 -2.5164 0.0117 24 1 -0.3633 0.0044 1.0276 25 1 -0.3633 0.8877 -0.5177 26 1 -0.3633 -0.8922 -0.5100 27 1 2.0367 2.1690 0.0005 28 1 4.6537 2.4713 -0.5252 29 1 5.6612 1.0038 -0.5193 30 1 6.5690 0.1825 1.5676 31 1 4.8808 -0.1440 2.0289 32 1 6.3661 0.0084 4.0234 33 1 5.1335 1.2932 4.0224 34 1 6.6836 2.7424 5.4574 35 1 7.6911 1.2750 5.4634 36 1 10.7824 4.4820 6.9698 37 1 5.7758 3.5637 3.3706 38 1 7.4638 3.8904 2.9096 39 1 5.9787 3.7378 0.9147 40 1 7.2113 2.4531 0.9158 41 1 2.7216 -3.1739 0.0144 42 1 1.2530 -2.7028 0.9029 43 1 1.2520 -2.7113 -0.8770 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204534975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 23:57:16 Heat of formation + Delta-G solvation = 0.521034 kcal Electronic energy + Delta-G solvation = -21761.143109 eV Core-core repulsion = 18613.954545 eV Total energy + Delta-G solvation = -3147.188564 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.55261 -40.20511 -36.93088 -35.19533 -34.65452 -33.09474 -31.92254 -30.91550 -29.53556 -28.28273 -26.29771 -24.52527 -24.27951 -22.93129 -22.19337 -20.70320 -20.16373 -18.96099 -17.70596 -17.37841 -16.84506 -16.32352 -16.16332 -15.91907 -15.63488 -15.22881 -15.10354 -14.61028 -14.55403 -14.30888 -14.01400 -13.64404 -13.60546 -13.54037 -13.43863 -13.15313 -13.08084 -12.86618 -12.78517 -12.40792 -12.24903 -12.14728 -12.05145 -11.85053 -11.62013 -11.36780 -10.79212 -10.44748 -9.49215 -9.11730 -9.04683 -8.29666 -6.33108 0.74120 1.33899 1.35062 1.45988 1.63366 2.00974 2.33277 2.95960 3.02845 3.17389 3.63830 3.90066 3.97356 4.05364 4.12624 4.19945 4.26820 4.32473 4.44090 4.49774 4.52939 4.59375 4.63271 4.70464 4.76367 4.82297 4.86623 4.88855 4.90811 4.93745 5.01538 5.09396 5.10609 5.12799 5.22202 5.36308 5.50479 5.75445 5.85224 5.90760 6.02977 6.29366 6.33067 6.60897 6.72388 7.30600 8.86722 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031716 B = 0.003418 C = 0.003286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.619453 B = 8190.682823 C = 8518.407244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.198 4.198 3 C -0.195 4.195 4 C -0.020 4.020 5 C 0.138 3.862 6 N -0.541 5.541 7 C 0.073 3.927 8 C 0.056 3.944 9 N -0.544 5.544 10 C 0.173 3.827 11 C -0.516 4.516 12 H 0.040 0.960 13 C 0.010 3.990 14 N -0.946 5.946 15 Si 0.946 3.054 16 H -0.264 1.264 17 H -0.280 1.280 18 H -0.255 1.255 19 C 0.069 3.931 20 C 0.070 3.930 21 O -0.193 6.193 22 C -0.032 4.032 23 C -0.070 4.070 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.155 0.845 28 H 0.126 0.874 29 H 0.053 0.947 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.027 0.973 34 H -0.015 1.015 35 H 0.028 0.972 36 H 0.267 0.733 37 H 0.025 0.975 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.039 0.961 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.985 -10.840 -14.215 27.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.200 4.200 3 C -0.215 4.215 4 C -0.070 4.070 5 C 0.011 3.989 6 N -0.267 5.267 7 C -0.055 4.055 8 C -0.072 4.072 9 N -0.269 5.269 10 C 0.045 3.955 11 C -0.554 4.554 12 H 0.059 0.941 13 C -0.188 4.188 14 N -0.587 5.587 15 Si 0.770 3.230 16 H -0.189 1.189 17 H -0.205 1.205 18 H -0.179 1.179 19 C -0.060 4.060 20 C -0.058 4.058 21 O -0.091 6.091 22 C -0.082 4.082 23 C -0.126 4.126 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.172 0.828 28 H 0.144 0.856 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.003 0.997 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.122 0.878 40 H 0.057 0.943 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -20.600 -10.940 -14.109 27.260 hybrid contribution 0.340 0.339 1.002 1.111 sum -20.260 -10.601 -13.107 26.356 Atomic orbital electron populations 1.20199 0.87404 1.03403 1.02448 1.20608 0.98471 0.91873 1.09003 1.21676 0.91733 1.00511 1.07597 1.22282 0.97359 0.80221 1.07151 1.20544 0.90932 0.97868 0.89511 1.62206 1.39206 1.10170 1.15101 1.22009 0.98591 0.91553 0.93359 1.22166 0.92485 0.95915 0.96648 1.62040 1.37299 1.10416 1.17162 1.19915 0.94054 0.95246 0.86245 1.21218 1.09850 1.30943 0.93390 0.94129 1.25812 0.95158 0.94748 1.03043 1.70038 1.22192 1.38219 1.28232 0.85727 0.79859 0.78633 0.78797 1.18923 1.20526 1.17929 1.21978 0.97971 0.92053 0.93965 1.22132 0.92239 0.95737 0.95650 1.83955 1.30127 1.22815 1.72233 1.22929 0.80282 0.98500 1.06454 1.20429 1.02076 0.85348 1.04780 0.91287 0.91134 0.90179 0.82766 0.85630 0.92931 0.94501 0.90331 0.90340 0.95432 0.99694 0.95445 0.92356 0.95656 0.91602 0.87776 0.94265 0.90516 0.88562 0.87993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.18 71.24 0.72 -0.36 16 2 C -0.20 -4.13 6.16 -19.94 -0.12 -4.25 16 3 C -0.20 -4.51 10.77 22.19 0.24 -4.27 16 4 C -0.02 -0.51 5.90 24.83 0.15 -0.36 16 5 C 0.14 3.18 5.50 85.55 0.47 3.65 16 6 N -0.54 -15.46 4.70 -900.24 -4.23 -19.69 16 7 C 0.07 2.25 5.44 86.31 0.47 2.72 16 8 C 0.06 2.02 5.61 86.31 0.48 2.50 16 9 N -0.54 -23.57 4.70 -900.26 -4.23 -27.80 16 10 C 0.17 8.57 3.79 85.56 0.32 8.90 16 11 C -0.52 -30.29 9.03 25.60 0.23 -30.06 16 12 H 0.04 2.64 7.38 -2.91 -0.02 2.62 16 13 C 0.01 0.58 5.47 84.65 0.46 1.05 16 14 N -0.95 -59.50 13.96 21.45 0.30 -59.20 16 15 Si 0.95 44.72 27.47 68.60 1.88 46.60 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 18 H -0.26 -11.46 6.54 99.48 0.65 -10.81 16 19 C 0.07 2.71 5.43 86.31 0.47 3.18 16 20 C 0.07 2.11 5.61 86.31 0.48 2.59 16 21 O -0.19 -5.00 9.95 -2.41 -0.02 -5.03 16 22 C -0.03 -0.67 7.32 24.83 0.18 -0.49 16 23 C -0.07 -0.88 9.94 71.24 0.71 -0.17 16 24 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.08 0.81 7.89 -2.39 -0.02 0.79 16 27 H 0.15 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.13 2.28 8.03 -2.39 -0.02 2.26 16 29 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.33 6.65 -2.39 -0.02 2.31 16 32 H 0.08 2.68 8.07 -2.39 -0.02 2.66 16 33 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 34 H -0.01 -0.73 7.18 -2.39 -0.02 -0.75 16 35 H 0.03 1.34 7.45 -2.39 -0.02 1.32 16 36 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 2.94 6.79 -2.39 -0.02 2.92 16 39 H 0.10 2.54 8.07 -2.39 -0.02 2.53 16 40 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -69.97 342.93 -0.12 -70.10 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 0.91 Total: 10.39 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 5.27 Total: -15.37 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -8.16 Total: -106.69 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: -0.02 Total: -5.03 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.88 Total: 46.60 kcal Total: -69.97 -0.12 -70.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204534975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.616 kcal (2) G-P(sol) polarization free energy of solvation -69.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds