Wall clock time and date at job start Tue Mar 31 2020 00:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47139 * 137.99003 * 3 2 1 5 5 C 1.53003 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46931 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46500 * 109.47150 * 295.13157 * 12 11 10 14 14 C 1.36934 * 119.99724 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00570 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47119 * 90.00235 * 18 16 14 20 20 H 1.48504 * 109.47026 * 209.99971 * 18 16 14 21 21 H 1.48500 * 109.47048 * 329.99810 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 23 23 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 24 24 H 4.44653 * 5.63316 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46893 * 17.98605 * 3 2 1 26 26 H 1.09001 * 109.47176 * 257.99191 * 3 2 1 27 27 H 1.08996 * 109.46993 * 60.00163 * 4 3 2 28 28 H 1.09001 * 109.47240 * 300.00149 * 4 3 2 29 29 H 1.09001 * 109.46646 * 60.00027 * 5 4 3 30 30 H 1.09001 * 109.47188 * 300.00170 * 5 4 3 31 31 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 32 32 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 33 33 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 34 34 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 35 35 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 36 36 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 37 37 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 38 38 H 0.96999 * 119.99704 * 359.97438 * 13 12 11 39 39 H 0.97003 * 120.00052 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.50232 * 301.42239 * 22 11 10 41 41 H 1.09007 * 109.52628 * 181.33900 * 22 11 10 42 42 H 1.08994 * 109.58580 * 353.38021 * 23 8 6 43 43 H 1.09006 * 109.57831 * 113.65514 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0727 -0.9654 5 6 4.6856 1.0729 -0.9659 6 6 5.1874 2.1293 -1.9163 7 8 4.3989 2.8147 -2.5322 8 7 6.5124 2.3123 -2.0818 9 6 7.0169 3.3377 -3.0052 10 6 7.9945 4.2455 -2.2522 11 6 9.0868 3.3835 -1.6077 12 6 10.0854 4.2870 -0.8814 13 7 10.7789 5.1318 -1.8570 14 6 11.7250 6.0279 -1.4366 15 1 11.9598 6.1123 -0.3858 16 6 12.3825 6.8280 -2.3610 17 7 12.0968 6.7249 -3.6417 18 14 13.6738 8.0500 -1.7876 19 1 15.0063 7.3945 -1.7789 20 1 13.7000 9.2124 -2.7113 21 1 13.3415 8.5144 -0.4168 22 6 8.4530 2.4155 -0.6061 23 6 7.4798 1.4893 -1.3431 24 1 -1.0502 -0.0001 0.0004 25 1 3.0098 -0.9767 -0.3173 26 1 3.0093 0.2146 1.0052 27 1 2.7918 2.0499 -0.6480 28 1 2.7923 0.8587 -1.9706 29 1 5.0489 0.0956 -1.2835 30 1 5.0492 1.2867 0.0392 31 1 7.5311 2.8582 -3.8381 32 1 6.1841 3.9310 -3.3827 33 1 8.4468 4.9507 -2.9494 34 1 7.4588 4.7929 -1.4766 35 1 9.6054 2.8174 -2.3815 36 1 9.5535 4.9170 -0.1684 37 1 10.8127 3.6723 -0.3512 38 1 10.5677 5.0563 -2.8007 39 1 12.5559 7.2842 -4.2876 40 1 7.9132 2.9802 0.1540 41 1 9.2330 1.8200 -0.1315 42 1 6.9526 0.8645 -0.6221 43 1 8.0298 0.8576 -2.0407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205131745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:37 Heat of formation + Delta-G solvation = 6.094839 kcal Electronic energy + Delta-G solvation = -21104.836090 eV Core-core repulsion = 17957.889224 eV Total energy + Delta-G solvation = -3146.946866 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26365 -37.83893 -35.85004 -34.94571 -32.94687 -32.51475 -31.04993 -30.42063 -28.25192 -26.52037 -23.86684 -23.51776 -22.32117 -21.63527 -20.10392 -19.00407 -18.35908 -17.28236 -16.82166 -16.22060 -15.89385 -14.95779 -14.74056 -14.46592 -14.34741 -13.84629 -13.78537 -13.53105 -13.48203 -12.90249 -12.85932 -12.65127 -12.34508 -12.18548 -11.81259 -11.71879 -11.28235 -11.15543 -10.99358 -10.83237 -10.50322 -10.47426 -10.37732 -10.36214 -10.17666 -9.97015 -9.80050 -9.61981 -8.86910 -8.60774 -6.91231 -5.76435 -3.04680 2.51239 2.56632 2.59494 2.98856 3.43561 3.48681 3.50492 4.05478 4.35874 4.58062 4.69156 4.71866 4.80934 4.97080 5.01056 5.13221 5.16885 5.26026 5.26126 5.30797 5.39633 5.49814 5.56966 5.63150 5.74958 5.81083 5.83027 5.93270 5.98863 6.02710 6.11314 6.16160 6.29527 6.39836 6.50711 6.69672 6.80357 6.91476 7.34675 7.39420 7.70153 8.14669 8.42808 9.53856 10.12252 10.46720 11.46502 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045513 B = 0.002627 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.062383 B =10656.437801 C =10829.627393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.184 4.184 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.512 3.488 7 O -0.546 6.546 8 N -0.609 5.609 9 C 0.109 3.891 10 C -0.123 4.123 11 C -0.094 4.094 12 C 0.158 3.842 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.127 4.127 23 C 0.107 3.893 24 H 0.216 0.784 25 H 0.087 0.913 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.082 0.918 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.540 -16.500 6.923 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.185 4.185 3 C -0.051 4.051 4 C -0.138 4.138 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.424 6.424 8 N -0.343 5.343 9 C -0.012 4.012 10 C -0.161 4.161 11 C -0.113 4.113 12 C 0.031 3.969 13 N -0.376 5.376 14 C -0.370 4.370 15 H 0.087 0.913 16 C -0.211 4.211 17 N -0.582 5.582 18 Si 0.738 3.262 19 H -0.218 1.218 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.166 4.166 23 C -0.016 4.016 24 H 0.233 0.767 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.036 0.964 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.836 -16.025 6.693 24.188 hybrid contribution 0.672 0.681 0.012 0.957 sum -16.164 -15.344 6.705 23.274 Atomic orbital electron populations 1.24921 0.96021 1.01012 1.01079 1.23117 0.94598 1.00379 1.00358 1.18778 0.84864 1.00388 1.01024 1.21288 0.93072 0.99251 1.00148 1.21706 0.97197 0.98964 1.00147 1.20631 0.81853 0.84592 0.82890 1.90694 1.54804 1.48192 1.48684 1.48201 1.05378 1.36884 1.43832 1.21703 0.98223 0.89800 0.91522 1.21967 0.95833 0.97771 1.00558 1.21360 0.95964 0.96288 0.97702 1.20665 0.92183 0.91725 0.92361 1.42375 1.45666 1.44057 1.05533 1.19228 1.12640 1.12405 0.92727 0.91266 1.24742 1.00558 1.00428 0.95368 1.69654 1.45396 1.43049 1.00145 0.86188 0.81678 0.80844 0.77470 1.21761 1.21781 1.20805 1.21922 0.98354 0.97941 0.98376 1.21810 0.91074 0.93165 0.95528 0.76718 0.89476 0.89422 0.90704 0.90772 0.88734 0.88608 0.91545 0.89281 0.89429 0.91932 0.90996 0.96490 0.96438 0.78246 0.93527 0.91501 0.90557 0.89944 0.91176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.79 19.25 29.55 0.57 -1.22 16 2 C -0.18 -1.68 13.34 -37.12 -0.50 -2.18 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.26 16 4 C -0.10 -0.86 4.46 -26.73 -0.12 -0.98 16 5 C -0.14 -1.10 4.05 -27.88 -0.11 -1.21 16 6 C 0.51 6.36 7.70 -10.99 -0.08 6.28 16 7 O -0.55 -8.99 15.39 5.56 0.09 -8.90 16 8 N -0.61 -7.29 2.97 -172.74 -0.51 -7.80 16 9 C 0.11 1.51 6.42 -3.71 -0.02 1.49 16 10 C -0.12 -1.91 5.27 -26.45 -0.14 -2.05 16 11 C -0.09 -1.42 2.19 -90.42 -0.20 -1.62 16 12 C 0.16 3.09 5.65 -4.04 -0.02 3.07 16 13 N -0.73 -18.29 5.32 -59.91 -0.32 -18.61 16 14 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 18 Si 0.91 22.47 29.55 -169.99 -5.02 17.45 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C -0.13 -1.42 5.37 -26.59 -0.14 -1.56 16 23 C 0.11 0.99 6.34 -3.68 -0.02 0.96 16 24 H 0.22 1.09 7.80 -54.08 -0.42 0.67 16 25 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.77 8.10 -51.93 -0.42 0.35 16 28 H 0.07 0.75 8.10 -51.93 -0.42 0.32 16 29 H 0.09 0.53 7.94 -51.93 -0.41 0.12 16 30 H 0.10 0.59 7.69 -51.93 -0.40 0.19 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 33 H 0.09 1.57 7.16 -51.93 -0.37 1.20 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.08 0.52 5.93 -51.93 -0.31 0.21 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -33.69 353.00 -8.11 -41.80 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.17 Total: 4.88 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.21 Total: -6.66 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.11 Total: -53.88 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: 0.09 Total: -8.90 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.69 -8.11 -41.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205131745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.892 kcal (2) G-P(sol) polarization free energy of solvation -33.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds