Wall clock time and date at job start Tue Mar 31 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47139 * 137.99003 * 3 2 1 5 5 C 1.53003 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.50698 * 109.46931 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99808 * 0.02562 * 6 5 4 8 8 N 1.34778 * 120.00023 * 180.02562 * 6 5 4 9 9 C 1.46919 * 120.63255 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.34238 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46500 * 109.47150 * 295.13157 * 12 11 10 14 14 C 1.36934 * 119.99724 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00570 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47119 * 90.00235 * 18 16 14 20 20 H 1.48504 * 109.47026 * 209.99971 * 18 16 14 21 21 H 1.48500 * 109.47048 * 329.99810 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 23 23 C 1.46933 * 120.62741 * 0.02562 * 8 6 5 24 24 H 4.44653 * 5.63316 * 180.02562 * 4 1 2 25 25 H 1.09005 * 109.46893 * 17.98605 * 3 2 1 26 26 H 1.09001 * 109.47176 * 257.99191 * 3 2 1 27 27 H 1.08996 * 109.46993 * 60.00163 * 4 3 2 28 28 H 1.09001 * 109.47240 * 300.00149 * 4 3 2 29 29 H 1.09001 * 109.46646 * 60.00027 * 5 4 3 30 30 H 1.09001 * 109.47188 * 300.00170 * 5 4 3 31 31 H 1.09002 * 109.58751 * 246.20189 * 9 8 6 32 32 H 1.08996 * 109.58750 * 6.48373 * 9 8 6 33 33 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 34 34 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 35 35 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 36 36 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 37 37 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 38 38 H 0.96999 * 119.99704 * 359.97438 * 13 12 11 39 39 H 0.97003 * 120.00052 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.50232 * 301.42239 * 22 11 10 41 41 H 1.09007 * 109.52628 * 181.33900 * 22 11 10 42 42 H 1.08994 * 109.58580 * 353.38021 * 23 8 6 43 43 H 1.09006 * 109.57831 * 113.65514 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.0727 -0.9654 5 6 4.6856 1.0729 -0.9659 6 6 5.1874 2.1293 -1.9163 7 8 4.3989 2.8147 -2.5322 8 7 6.5124 2.3123 -2.0818 9 6 7.0169 3.3377 -3.0052 10 6 7.9945 4.2455 -2.2522 11 6 9.0868 3.3835 -1.6077 12 6 10.0854 4.2870 -0.8814 13 7 10.7789 5.1318 -1.8570 14 6 11.7250 6.0279 -1.4366 15 1 11.9598 6.1123 -0.3858 16 6 12.3825 6.8280 -2.3610 17 7 12.0968 6.7249 -3.6417 18 14 13.6738 8.0500 -1.7876 19 1 15.0063 7.3945 -1.7789 20 1 13.7000 9.2124 -2.7113 21 1 13.3415 8.5144 -0.4168 22 6 8.4530 2.4155 -0.6061 23 6 7.4798 1.4893 -1.3431 24 1 -1.0502 -0.0001 0.0004 25 1 3.0098 -0.9767 -0.3173 26 1 3.0093 0.2146 1.0052 27 1 2.7918 2.0499 -0.6480 28 1 2.7923 0.8587 -1.9706 29 1 5.0489 0.0956 -1.2835 30 1 5.0492 1.2867 0.0392 31 1 7.5311 2.8582 -3.8381 32 1 6.1841 3.9310 -3.3827 33 1 8.4468 4.9507 -2.9494 34 1 7.4588 4.7929 -1.4766 35 1 9.6054 2.8174 -2.3815 36 1 9.5535 4.9170 -0.1684 37 1 10.8127 3.6723 -0.3512 38 1 10.5677 5.0563 -2.8007 39 1 12.5559 7.2842 -4.2876 40 1 7.9132 2.9802 0.1540 41 1 9.2330 1.8200 -0.1315 42 1 6.9526 0.8645 -0.6221 43 1 8.0298 0.8576 -2.0407 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205131745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:36 Heat of formation + Delta-G solvation = -14.708580 kcal Electronic energy + Delta-G solvation = -21105.738194 eV Core-core repulsion = 17957.889224 eV Total energy + Delta-G solvation = -3147.848970 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.24475 -38.98136 -36.62509 -36.42060 -34.47117 -33.32795 -32.21055 -32.01336 -29.06703 -27.89938 -25.52575 -24.51603 -23.44396 -22.82209 -21.27674 -19.93840 -19.22848 -18.91273 -17.91413 -16.97584 -16.84298 -16.66907 -15.78718 -15.57048 -15.42625 -15.32974 -15.14272 -14.57459 -14.53284 -14.10907 -13.87722 -13.66560 -13.47999 -13.25830 -13.09345 -12.89880 -12.73913 -12.43486 -12.19948 -12.12603 -11.95728 -11.90556 -11.65972 -11.40367 -11.36445 -11.13097 -10.94152 -10.92064 -10.72249 -9.62114 -8.98375 -7.95343 -5.23460 1.46504 1.48277 1.56676 1.67057 1.85097 1.94947 2.10896 2.55865 3.38083 3.50290 3.60125 3.78987 3.88241 3.92517 4.10694 4.13379 4.17098 4.32240 4.36004 4.41874 4.57062 4.66907 4.69877 4.71790 4.76889 4.81975 4.85199 4.92521 4.99936 5.04891 5.13476 5.17611 5.22842 5.23480 5.31632 5.36537 5.47715 5.56509 5.62231 6.27435 6.49313 6.74548 7.21503 7.33580 8.11493 8.33766 9.28188 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.045513 B = 0.002627 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.062383 B =10656.437801 C =10829.627393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.215 4.215 3 C -0.010 4.010 4 C -0.095 4.095 5 C -0.130 4.130 6 C 0.503 3.497 7 O -0.598 6.598 8 N -0.610 5.610 9 C 0.117 3.883 10 C -0.114 4.114 11 C -0.085 4.085 12 C 0.156 3.844 13 N -0.745 5.745 14 C -0.245 4.245 15 H 0.075 0.925 16 C -0.078 4.078 17 N -0.969 5.969 18 Si 0.974 3.026 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.270 1.270 22 C -0.120 4.120 23 C 0.107 3.893 24 H 0.238 0.762 25 H 0.110 0.890 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.130 0.870 30 H 0.125 0.875 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.068 0.932 36 H 0.012 0.988 37 H 0.025 0.975 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.067 0.933 41 H 0.098 0.902 42 H 0.126 0.874 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.395 -18.876 9.073 26.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.215 4.215 3 C -0.046 4.046 4 C -0.133 4.133 5 C -0.169 4.169 6 C 0.294 3.706 7 O -0.479 6.479 8 N -0.342 5.342 9 C -0.007 4.007 10 C -0.153 4.153 11 C -0.104 4.104 12 C 0.029 3.971 13 N -0.388 5.388 14 C -0.377 4.377 15 H 0.092 0.908 16 C -0.270 4.270 17 N -0.620 5.620 18 Si 0.803 3.197 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.195 1.195 22 C -0.159 4.159 23 C -0.015 4.015 24 H 0.254 0.746 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.148 0.852 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.030 0.970 37 H 0.043 0.957 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.144 0.856 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -16.687 -18.443 8.901 26.417 hybrid contribution 0.572 1.422 -0.633 1.658 sum -16.115 -17.022 8.268 24.856 Atomic orbital electron populations 1.25710 0.97145 1.00599 1.00681 1.23886 0.95926 1.00870 1.00845 1.18862 0.83609 1.00644 1.01466 1.21180 0.93975 0.98673 0.99455 1.21767 0.96146 0.98736 1.00229 1.21553 0.81379 0.84850 0.82802 1.90678 1.56060 1.50330 1.50821 1.48313 1.06044 1.36402 1.43462 1.21430 0.96985 0.90179 0.92057 1.21802 0.96209 0.97642 0.99603 1.21276 0.94706 0.96078 0.98304 1.20868 0.92835 0.91649 0.91722 1.42613 1.45642 1.44492 1.06060 1.19645 1.12611 1.12425 0.92971 0.90751 1.25580 1.03138 1.02753 0.95562 1.69814 1.46817 1.44208 1.01199 0.85136 0.79096 0.78242 0.77269 1.21229 1.22326 1.19528 1.21896 0.99226 0.97465 0.97299 1.22078 0.90511 0.92576 0.96309 0.74559 0.87230 0.87485 0.93262 0.92915 0.85215 0.85661 0.90876 0.91316 0.92829 0.93079 0.91331 0.97005 0.95659 0.79379 0.94055 0.91467 0.88351 0.85622 0.89792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.54 19.25 74.32 1.43 -2.11 16 2 C -0.22 -3.65 13.34 31.12 0.42 -3.23 16 3 C -0.01 -0.11 5.70 28.79 0.16 0.06 16 4 C -0.09 -1.50 4.46 30.60 0.14 -1.36 16 5 C -0.13 -1.56 4.05 29.85 0.12 -1.44 16 6 C 0.50 11.73 7.70 87.66 0.67 12.40 16 7 O -0.60 -20.06 15.39 -3.03 -0.05 -20.11 16 8 N -0.61 -13.39 2.97 -818.81 -2.43 -15.82 16 9 C 0.12 3.25 6.42 86.36 0.55 3.81 16 10 C -0.11 -3.63 5.27 30.78 0.16 -3.47 16 11 C -0.08 -2.47 2.19 -10.66 -0.02 -2.50 16 12 C 0.16 6.00 5.65 86.38 0.49 6.49 16 13 N -0.75 -37.80 5.32 -343.45 -1.83 -39.63 16 14 C -0.24 -13.76 9.99 84.04 0.84 -12.92 16 15 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 16 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 17 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 18 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 20 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C -0.12 -2.28 5.37 30.69 0.16 -2.11 16 23 C 0.11 1.51 6.34 86.38 0.55 2.05 16 24 H 0.24 2.10 7.80 -4.41 -0.03 2.07 16 25 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 1.01 8.10 -2.39 -0.02 1.00 16 28 H 0.05 1.04 8.10 -2.39 -0.02 1.03 16 29 H 0.13 0.74 7.94 -2.39 -0.02 0.72 16 30 H 0.13 0.86 7.69 -2.39 -0.02 0.84 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 2.20 7.00 -2.39 -0.02 2.18 16 33 H 0.05 2.05 7.16 -2.39 -0.02 2.03 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.37 20.16 6.85 -92.71 -0.63 19.53 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.13 0.78 5.93 -2.39 -0.01 0.76 16 43 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -76.52 353.00 4.49 -72.03 By element: Atomic # 1 Polarization: 22.64 SS G_CDS: 0.34 Total: 22.98 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 6.14 Total: -8.41 kcal Atomic # 7 Polarization: -111.04 SS G_CDS: -3.98 Total: -115.02 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.05 Total: -20.11 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -76.52 4.49 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205131745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.322 kcal (2) G-P(sol) polarization free energy of solvation -76.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds