Wall clock time and date at job start Tue Mar 31 2020 00:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.47206 * 109.46830 * 119.99295 * 2 1 3 5 5 C 2.64605 * 109.46651 * 119.99459 * 2 1 3 6 6 C 4.07803 * 109.46748 * 119.99409 * 2 1 3 7 7 O 1.21610 * 119.99922 * 266.68105 * 6 5 4 8 8 N 1.34780 * 120.00319 * 86.68863 * 6 5 4 9 9 C 1.46919 * 120.63395 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46500 * 109.47150 * 295.13157 * 12 11 10 14 14 C 1.36934 * 119.99724 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00570 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47313 * 60.00080 * 18 16 14 20 20 H 1.48500 * 109.46981 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47156 * 300.00129 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 23 23 C 1.46933 * 120.62602 * 359.97007 * 8 6 5 24 24 H 1.08994 * 109.47744 * 300.00830 * 1 2 3 25 25 H 1.09001 * 109.46320 * 60.00914 * 1 2 3 26 26 H 1.09003 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47744 * 239.99170 * 2 1 3 28 28 H 1.08998 * 109.46550 * 299.99202 * 3 2 1 29 29 H 1.09000 * 109.47596 * 59.99490 * 3 2 1 30 30 H 1.08999 * 109.46863 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 32 32 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 33 33 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 34 34 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 35 35 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 36 36 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 37 37 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 38 38 H 0.96999 * 119.99704 * 359.97438 * 13 12 11 39 39 H 0.97003 * 120.00052 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.50232 * 301.42239 * 22 11 10 41 41 H 1.09007 * 109.52628 * 181.33900 * 22 11 10 42 42 H 1.08994 * 109.58580 * 353.42544 * 23 8 6 43 43 H 1.09006 * 109.57831 * 113.70037 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4118 -1.2472 2.1607 6 6 2.8891 -1.9221 3.3300 7 8 2.6458 -1.4725 4.4334 8 7 3.6081 -3.0555 3.2077 9 6 4.1051 -3.7590 4.3979 10 6 3.6490 -5.2202 4.3371 11 6 4.1013 -5.8334 3.0064 12 6 3.6776 -7.3026 2.9532 13 7 4.3882 -8.0536 3.9912 14 6 4.1682 -9.3974 4.1358 15 1 3.4706 -9.9036 3.4850 16 6 4.8418 -10.1091 5.1189 17 7 5.6924 -9.4924 5.9118 18 14 4.5423 -11.9424 5.3158 19 1 4.9034 -12.6411 4.0561 20 1 5.3776 -12.4639 6.4274 21 1 3.1083 -12.1798 5.6199 22 6 3.4554 -5.0742 1.8452 23 6 3.9096 -3.6112 1.8813 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 5.1941 -3.7167 4.4193 32 1 3.7035 -3.2879 5.2950 33 1 4.0907 -5.7740 5.1656 34 1 2.5621 -5.2652 4.4072 35 1 5.1862 -5.7651 2.9261 36 1 2.6033 -7.3772 3.1218 37 1 3.9214 -7.7158 1.9745 38 1 5.0144 -7.5989 4.5759 39 1 6.1628 -9.9896 6.5991 40 1 2.3705 -5.1208 1.9386 41 1 3.7590 -5.5260 0.9007 42 1 3.3772 -3.0441 1.1179 43 1 4.9825 -3.5545 1.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205203677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:40 Heat of formation + Delta-G solvation = 8.196901 kcal Electronic energy + Delta-G solvation = -21066.591283 eV Core-core repulsion = 17919.735570 eV Total energy + Delta-G solvation = -3146.855714 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.19467 -37.72116 -36.72992 -34.96745 -32.98123 -32.21951 -30.92836 -30.32196 -27.64215 -26.91197 -24.65852 -23.72373 -22.87204 -21.99711 -20.92150 -19.67880 -18.04971 -17.03481 -16.68861 -16.03028 -15.40488 -15.04186 -14.75705 -14.34650 -14.14726 -13.97597 -13.73314 -13.64400 -13.29893 -12.89028 -12.68769 -12.47131 -12.41090 -12.21687 -11.87661 -11.85451 -11.80064 -11.20083 -10.99860 -10.81618 -10.60548 -10.56165 -10.50907 -10.38077 -10.21275 -10.07993 -9.98297 -9.64070 -8.85944 -8.69140 -6.90762 -5.75710 -3.03992 1.43298 2.11263 2.86555 3.40568 3.44742 3.49045 3.50146 3.79620 4.51499 4.58769 4.63981 4.66731 4.79210 4.93185 4.99166 5.12172 5.16947 5.24548 5.34843 5.35145 5.40393 5.47743 5.54190 5.57755 5.62020 5.75370 5.76810 5.79459 5.92148 5.99325 6.09809 6.16383 6.28187 6.35946 6.49433 6.67892 6.79598 6.91719 7.03371 7.25476 7.70355 7.99272 8.43594 9.54565 10.12786 10.47435 11.47210 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002870 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.563972 B = 9752.467453 C =10153.320674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.147 4.147 4 C -0.085 4.085 5 C -0.212 4.212 6 C 0.629 3.371 7 O -0.530 6.530 8 N -0.596 5.596 9 C 0.112 3.888 10 C -0.124 4.124 11 C -0.095 4.095 12 C 0.159 3.841 13 N -0.732 5.732 14 C -0.239 4.239 15 H 0.069 0.931 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.126 4.126 23 C 0.109 3.891 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.340 19.969 -14.046 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.008 4.008 3 C -0.204 4.204 4 C -0.088 4.088 5 C -0.215 4.215 6 C 0.418 3.582 7 O -0.408 6.408 8 N -0.328 5.328 9 C -0.010 4.010 10 C -0.162 4.162 11 C -0.114 4.114 12 C 0.031 3.969 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.165 4.165 23 C -0.014 4.014 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.505 20.012 -13.448 24.973 hybrid contribution 0.109 -1.030 0.291 1.076 sum -6.396 18.982 -13.157 23.965 Atomic orbital electron populations 1.21850 0.92776 1.02934 1.02862 1.18496 0.96304 0.95227 0.90788 1.21849 1.01728 0.93940 1.02869 1.22600 0.94948 0.96275 0.94958 1.20712 1.03720 1.01667 0.95363 1.14794 0.78051 0.80086 0.85284 1.90839 1.57873 1.66051 1.26059 1.48011 1.52408 1.23741 1.08640 1.21805 0.98992 0.92792 0.87388 1.21994 1.01731 0.93435 0.99066 1.21378 1.00365 0.95937 0.93712 1.20658 0.95159 0.88511 0.92565 1.42366 1.50872 1.06356 1.38032 1.19183 1.19916 0.84900 1.13072 0.91327 1.24734 0.99531 0.98096 0.98656 1.69642 1.30838 1.35192 1.22617 0.86266 0.77397 0.85352 0.77155 1.21315 1.21691 1.21296 1.21919 1.01282 0.93644 0.99637 1.21816 1.01121 0.95055 0.83419 0.91925 0.91171 0.91888 0.88143 0.91181 0.91925 0.91989 0.90941 0.88871 0.89077 0.91739 0.90848 0.96443 0.96399 0.78231 0.93465 0.91458 0.90412 0.90132 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.15 37.16 0.34 -0.50 16 2 C 0.01 0.06 3.30 -93.40 -0.31 -0.24 16 3 C -0.15 -0.81 9.15 37.16 0.34 -0.47 16 4 C -0.09 -0.88 12.50 -37.12 -0.46 -1.34 16 5 C -0.21 -2.74 11.57 -38.84 -0.45 -3.19 16 6 C 0.63 9.58 7.55 -14.33 -0.11 9.47 16 7 O -0.53 -9.80 16.50 5.27 0.09 -9.72 16 8 N -0.60 -8.08 2.97 -175.62 -0.52 -8.61 16 9 C 0.11 1.57 6.42 -3.71 -0.02 1.55 16 10 C -0.12 -1.95 5.27 -26.45 -0.14 -2.09 16 11 C -0.10 -1.47 2.19 -90.42 -0.20 -1.67 16 12 C 0.16 3.13 5.65 -4.04 -0.02 3.11 16 13 N -0.73 -18.35 5.32 -59.91 -0.32 -18.67 16 14 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 18 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 C -0.13 -1.54 5.36 -26.60 -0.14 -1.68 16 23 C 0.11 1.20 6.33 -3.69 -0.02 1.18 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 33 H 0.09 1.62 7.16 -51.93 -0.37 1.25 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 39 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.08 0.79 6.32 -51.93 -0.33 0.46 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 354.25 15.07 5.34 5.34 Total: -1.00 -32.99 354.25 -8.39 -41.38 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.23 Total: 3.55 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.45 Total: -3.26 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.12 Total: -54.78 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.99 -8.39 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205203677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.573 kcal (2) G-P(sol) polarization free energy of solvation -32.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds