Wall clock time and date at job start Tue Mar 31 2020 00:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47005 * 2 1 4 4 C 1.47206 * 109.46830 * 119.99295 * 2 1 3 5 5 C 2.64605 * 109.46651 * 119.99459 * 2 1 3 6 6 C 4.07803 * 109.46748 * 119.99409 * 2 1 3 7 7 O 1.21610 * 119.99922 * 266.68105 * 6 5 4 8 8 N 1.34780 * 120.00319 * 86.68863 * 6 5 4 9 9 C 1.46919 * 120.63395 * 179.97438 * 8 6 5 10 10 C 1.53195 * 108.89273 * 126.29715 * 9 8 6 11 11 C 1.53346 * 109.14901 * 54.57640 * 10 9 8 12 12 C 1.53004 * 109.41904 * 178.67276 * 11 10 9 13 13 N 1.46500 * 109.47150 * 295.13157 * 12 11 10 14 14 C 1.36934 * 119.99724 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00570 * 359.97438 * 14 13 12 16 16 C 1.38817 * 119.99789 * 179.97438 * 14 13 12 17 17 N 1.31618 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99915 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47313 * 60.00080 * 18 16 14 20 20 H 1.48500 * 109.46981 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47156 * 300.00129 * 18 16 14 22 22 C 1.53034 * 109.61010 * 298.71225 * 11 10 9 23 23 C 1.46933 * 120.62602 * 359.97007 * 8 6 5 24 24 H 1.08994 * 109.47744 * 300.00830 * 1 2 3 25 25 H 1.09001 * 109.46320 * 60.00914 * 1 2 3 26 26 H 1.09003 * 109.47169 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47744 * 239.99170 * 2 1 3 28 28 H 1.08998 * 109.46550 * 299.99202 * 3 2 1 29 29 H 1.09000 * 109.47596 * 59.99490 * 3 2 1 30 30 H 1.08999 * 109.46863 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.58751 * 246.15665 * 9 8 6 32 32 H 1.08996 * 109.58750 * 6.43850 * 9 8 6 33 33 H 1.08997 * 109.49914 * 174.65962 * 10 9 8 34 34 H 1.09002 * 109.49585 * 294.75599 * 10 9 8 35 35 H 1.09001 * 109.42242 * 58.75065 * 11 10 9 36 36 H 1.09001 * 109.46592 * 55.13132 * 12 11 10 37 37 H 1.08997 * 109.47133 * 175.12697 * 12 11 10 38 38 H 0.96999 * 119.99704 * 359.97438 * 13 12 11 39 39 H 0.97003 * 120.00052 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.50232 * 301.42239 * 22 11 10 41 41 H 1.09007 * 109.52628 * 181.33900 * 22 11 10 42 42 H 1.08994 * 109.58580 * 353.42544 * 23 8 6 43 43 H 1.09006 * 109.57831 * 113.70037 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4118 -1.2472 2.1607 6 6 2.8891 -1.9221 3.3300 7 8 2.6458 -1.4725 4.4334 8 7 3.6081 -3.0555 3.2077 9 6 4.1051 -3.7590 4.3979 10 6 3.6490 -5.2202 4.3371 11 6 4.1013 -5.8334 3.0064 12 6 3.6776 -7.3026 2.9532 13 7 4.3882 -8.0536 3.9912 14 6 4.1682 -9.3974 4.1358 15 1 3.4706 -9.9036 3.4850 16 6 4.8418 -10.1091 5.1189 17 7 5.6924 -9.4924 5.9118 18 14 4.5423 -11.9424 5.3158 19 1 4.9034 -12.6411 4.0561 20 1 5.3776 -12.4639 6.4274 21 1 3.1083 -12.1798 5.6199 22 6 3.4554 -5.0742 1.8452 23 6 3.9096 -3.6112 1.8813 24 1 -0.3634 0.5139 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8898 28 1 1.6767 1.9562 -0.8901 29 1 1.6766 1.9564 0.8899 30 1 3.1300 1.4425 0.0005 31 1 5.1941 -3.7167 4.4193 32 1 3.7035 -3.2879 5.2950 33 1 4.0907 -5.7740 5.1656 34 1 2.5621 -5.2652 4.4072 35 1 5.1862 -5.7651 2.9261 36 1 2.6033 -7.3772 3.1218 37 1 3.9214 -7.7158 1.9745 38 1 5.0144 -7.5989 4.5759 39 1 6.1628 -9.9896 6.5991 40 1 2.3705 -5.1208 1.9386 41 1 3.7590 -5.5260 0.9007 42 1 3.3772 -3.0441 1.1179 43 1 4.9825 -3.5545 1.6968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205203677.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:43:39 Heat of formation + Delta-G solvation = -11.586107 kcal Electronic energy + Delta-G solvation = -21067.449139 eV Core-core repulsion = 17919.735570 eV Total energy + Delta-G solvation = -3147.713569 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.33996 -38.99533 -37.33726 -36.61222 -34.57325 -33.23295 -32.27367 -31.84459 -28.41214 -28.05395 -26.01923 -25.16749 -23.92282 -23.26054 -22.08143 -20.86613 -19.37090 -18.80378 -17.73295 -16.83675 -16.72212 -16.50090 -15.66977 -15.58797 -15.43812 -15.36365 -15.16278 -14.72856 -14.33123 -14.24089 -13.94321 -13.60957 -13.21380 -13.09627 -12.97209 -12.88749 -12.72281 -12.48051 -12.32465 -12.27785 -12.20143 -11.99219 -11.71721 -11.63154 -11.47032 -11.36725 -11.36448 -11.03763 -10.90549 -9.82820 -8.98282 -7.94718 -5.22915 0.44085 1.21522 1.46986 1.49940 1.56099 1.85842 2.39822 2.56369 2.95363 3.38581 3.70787 3.74704 3.82009 3.98166 4.06297 4.10853 4.18459 4.25468 4.29922 4.38453 4.47761 4.57906 4.69314 4.72854 4.79265 4.83310 4.93655 4.93985 4.95005 4.97080 5.06683 5.12048 5.12973 5.23735 5.33951 5.35320 5.45886 5.47855 5.52973 6.16391 6.18599 6.27919 6.86741 7.34345 8.11431 8.34542 9.28606 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.036376 B = 0.002870 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.563972 B = 9752.467453 C =10153.320674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.005 3.995 3 C -0.146 4.146 4 C -0.041 4.041 5 C -0.268 4.268 6 C 0.627 3.373 7 O -0.578 6.578 8 N -0.593 5.593 9 C 0.118 3.882 10 C -0.116 4.116 11 C -0.085 4.085 12 C 0.157 3.843 13 N -0.744 5.744 14 C -0.246 4.246 15 H 0.074 0.926 16 C -0.076 4.076 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.276 1.276 20 H -0.295 1.295 21 H -0.280 1.280 22 C -0.117 4.117 23 C 0.110 3.890 24 H 0.050 0.950 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.012 0.988 37 H 0.026 0.974 38 H 0.375 0.625 39 H 0.251 0.749 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.100 0.900 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.903 20.667 -17.122 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.012 4.012 3 C -0.203 4.203 4 C -0.044 4.044 5 C -0.271 4.271 6 C 0.417 3.583 7 O -0.460 6.460 8 N -0.324 5.324 9 C -0.004 4.004 10 C -0.154 4.154 11 C -0.104 4.104 12 C 0.031 3.969 13 N -0.387 5.387 14 C -0.378 4.378 15 H 0.092 0.908 16 C -0.268 4.268 17 N -0.620 5.620 18 Si 0.802 3.198 19 H -0.202 1.202 20 H -0.222 1.222 21 H -0.206 1.206 22 C -0.155 4.155 23 C -0.011 4.011 24 H 0.069 0.931 25 H 0.114 0.886 26 H 0.077 0.923 27 H 0.147 0.853 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.093 0.907 36 H 0.030 0.970 37 H 0.044 0.956 38 H 0.208 0.792 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.088 20.706 -16.587 27.461 hybrid contribution 0.219 -1.183 1.141 1.658 sum -6.868 19.523 -15.446 25.824 Atomic orbital electron populations 1.21875 0.91996 1.02910 1.03604 1.18893 0.96827 0.95696 0.89816 1.21870 1.01661 0.93168 1.03597 1.23472 0.92244 0.94020 0.94633 1.20427 1.06400 1.04031 0.96227 1.15091 0.77504 0.80195 0.85478 1.90798 1.59768 1.67405 1.27979 1.48082 1.51698 1.23292 1.09348 1.21646 0.99657 0.91471 0.87612 1.21841 1.00704 0.94294 0.98564 1.21279 1.00630 0.93575 0.94894 1.20826 0.94234 0.90653 0.91196 1.42581 1.51120 1.05932 1.39093 1.19597 1.19238 0.86359 1.12640 0.90837 1.25559 0.99917 1.02476 0.98858 1.69801 1.32148 1.36644 1.23373 0.85221 0.77276 0.80245 0.77078 1.20248 1.22159 1.20592 1.21860 1.00743 0.93996 0.98943 1.21994 1.02543 0.94119 0.82484 0.93099 0.88604 0.92317 0.85321 0.88640 0.93095 0.92150 0.89533 0.90228 0.91717 0.92888 0.90727 0.96975 0.95639 0.79243 0.94002 0.91828 0.88062 0.88144 0.89029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.15 71.98 0.66 -0.60 16 2 C 0.01 0.05 3.30 -12.60 -0.04 0.01 16 3 C -0.15 -1.16 9.15 71.98 0.66 -0.50 16 4 C -0.04 -0.76 12.50 31.13 0.39 -0.38 16 5 C -0.27 -6.74 11.57 30.01 0.35 -6.39 16 6 C 0.63 19.32 7.55 85.49 0.65 19.97 16 7 O -0.58 -22.32 16.50 -4.06 -0.07 -22.38 16 8 N -0.59 -15.83 2.97 -827.79 -2.46 -18.29 16 9 C 0.12 3.39 6.42 86.36 0.55 3.95 16 10 C -0.12 -3.72 5.27 30.78 0.16 -3.56 16 11 C -0.08 -2.56 2.19 -10.66 -0.02 -2.59 16 12 C 0.16 6.14 5.65 86.38 0.49 6.63 16 13 N -0.74 -37.72 5.32 -343.45 -1.83 -39.55 16 14 C -0.25 -13.87 9.99 84.04 0.84 -13.03 16 15 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 16 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 17 N -0.97 -59.60 13.06 21.65 0.28 -59.31 16 18 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 C -0.12 -2.59 5.36 30.68 0.16 -2.43 16 23 C 0.11 2.18 6.33 86.37 0.55 2.73 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.13 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.31 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.52 7.00 -2.39 -0.02 2.50 16 33 H 0.06 2.42 7.16 -2.39 -0.02 2.41 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.38 20.07 6.85 -92.71 -0.63 19.44 16 39 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.10 1.66 6.32 -2.39 -0.02 1.64 16 43 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -72.93 354.25 4.16 -68.77 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.35 Total: 22.41 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: 5.86 Total: -0.11 kcal Atomic # 7 Polarization: -113.14 SS G_CDS: -4.00 Total: -117.15 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.07 Total: -22.38 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -72.93 4.16 -68.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205203677.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.182 kcal (2) G-P(sol) polarization free energy of solvation -72.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds