Wall clock time and date at job start Tue Mar 31 2020 00:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47111 * 53.31812 * 3 2 1 5 5 C 1.52997 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47248 * 180.02562 * 5 4 3 7 7 C 1.50695 * 109.47255 * 180.02562 * 6 5 4 8 8 O 1.21277 * 120.00067 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00063 * 179.97438 * 7 6 5 10 10 C 1.46930 * 120.63050 * 359.97375 * 9 7 6 11 11 C 1.53195 * 108.77695 * 233.63227 * 10 9 7 12 12 C 1.53045 * 109.30969 * 305.36626 * 11 10 9 13 13 C 1.53033 * 109.54155 * 61.36742 * 12 11 10 14 14 H 1.09005 * 109.52577 * 58.59455 * 13 12 11 15 15 N 1.46494 * 109.50279 * 178.68377 * 13 12 11 16 16 C 1.36945 * 119.99612 * 274.83869 * 15 13 12 17 17 H 1.07999 * 120.00077 * 359.97438 * 16 15 13 18 18 C 1.38812 * 119.99637 * 179.97438 * 16 15 13 19 19 N 1.31624 * 119.99539 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00216 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46712 * 90.00052 * 20 18 16 22 22 H 1.48499 * 109.46916 * 209.99467 * 20 18 16 23 23 H 1.48492 * 109.46909 * 330.00070 * 20 18 16 24 24 C 1.46926 * 120.63095 * 179.97438 * 9 7 6 25 25 H 4.44654 * 5.63377 * 180.02562 * 4 1 2 26 26 H 1.09004 * 109.46830 * 293.32420 * 3 2 1 27 27 H 1.08995 * 109.47274 * 173.31757 * 3 2 1 28 28 H 1.09002 * 109.46658 * 60.00039 * 4 3 2 29 29 H 1.08999 * 109.47440 * 300.00357 * 4 3 2 30 30 H 1.08995 * 109.47338 * 60.00023 * 5 4 3 31 31 H 1.08999 * 109.47094 * 300.00365 * 5 4 3 32 32 H 1.08995 * 109.47374 * 59.99504 * 6 5 4 33 33 H 1.09006 * 109.46647 * 300.00161 * 6 5 4 34 34 H 1.08994 * 109.58642 * 353.41859 * 10 9 7 35 35 H 1.08997 * 109.58627 * 113.84647 * 10 9 7 36 36 H 1.08998 * 109.49634 * 65.31857 * 11 10 9 37 37 H 1.08999 * 109.49768 * 185.37935 * 11 10 9 38 38 H 1.08995 * 109.45857 * 301.33806 * 12 11 10 39 39 H 1.09004 * 109.45360 * 181.38686 * 12 11 10 40 40 H 0.96995 * 120.00290 * 95.10760 * 15 13 12 41 41 H 0.97005 * 119.99727 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.58612 * 6.58376 * 24 9 7 43 43 H 1.09005 * 109.70347 * 246.22039 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.8608 -1.1569 5 6 4.6864 -0.8607 -1.1565 6 6 5.1968 -1.7216 -2.3137 7 6 6.7037 -1.7220 -2.3129 8 8 7.3099 -1.0950 -1.4701 9 7 7.3779 -2.4191 -3.2488 10 6 6.6577 -3.1840 -4.2760 11 6 7.1655 -4.6293 -4.2611 12 6 8.6870 -4.6328 -4.4262 13 6 9.3304 -3.8828 -3.2577 14 1 9.0463 -4.3584 -2.3189 15 7 10.7881 -3.9138 -3.4000 16 6 11.4995 -4.9847 -2.9285 17 1 10.9859 -5.8063 -2.4514 18 6 12.8807 -5.0143 -3.0638 19 7 13.5643 -6.0439 -2.6110 20 14 13.7689 -3.5935 -3.8896 21 1 14.1393 -2.5809 -2.8685 22 1 14.9970 -4.0975 -4.5552 23 1 12.8765 -2.9730 -4.9013 24 6 8.8471 -2.4286 -3.2614 25 1 -1.0499 0.0000 -0.0003 26 1 3.0095 -0.4061 0.9437 27 1 3.0089 1.0214 -0.1196 28 1 2.7928 -0.4541 -2.1005 29 1 2.7935 -1.8817 -1.0374 30 1 5.0495 -1.2675 -0.2128 31 1 5.0496 0.1601 -1.2757 32 1 4.8336 -1.3144 -3.2572 33 1 4.8335 -2.7425 -2.1947 34 1 5.5894 -3.1698 -4.0601 35 1 6.8405 -2.7425 -5.2556 36 1 6.9013 -5.0980 -3.3132 37 1 6.7088 -5.1838 -5.0809 38 1 8.9518 -4.1420 -5.3627 39 1 9.0482 -5.6611 -4.4407 40 1 11.2498 -3.1739 -3.8246 41 1 14.5296 -6.0644 -2.7052 42 1 9.2234 -1.9161 -2.3761 43 1 9.2103 -1.9250 -4.1573 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207860796.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:59 Heat of formation + Delta-G solvation = -11.164869 kcal Electronic energy + Delta-G solvation = -21187.943472 eV Core-core repulsion = 18040.248169 eV Total energy + Delta-G solvation = -3147.695303 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.23424 -38.85788 -36.97531 -36.30684 -34.21047 -33.79814 -32.91107 -31.27085 -30.11467 -26.91516 -25.91895 -24.88149 -23.33021 -22.27529 -21.46967 -20.15487 -19.49037 -18.83071 -18.09090 -17.05521 -16.89211 -16.53405 -16.19046 -15.66002 -15.30318 -15.19004 -15.05843 -14.71696 -14.53145 -14.43913 -14.00237 -13.73737 -13.67930 -13.18277 -12.97578 -12.60942 -12.55168 -12.47258 -12.20270 -12.15034 -11.89622 -11.84048 -11.75023 -11.67199 -11.56222 -11.08535 -10.97393 -10.94589 -10.73797 -9.67580 -9.32542 -8.05187 -5.39814 1.35702 1.40144 1.46671 1.66803 1.89441 1.95776 2.03658 2.46099 3.25566 3.45460 3.56662 3.65748 3.95158 3.98538 4.08217 4.08684 4.13294 4.22884 4.34474 4.44051 4.46397 4.58741 4.65578 4.74357 4.77472 4.82447 4.87426 4.92692 4.94756 5.05977 5.13235 5.17345 5.24351 5.37287 5.39954 5.45808 5.52454 5.52837 5.74214 6.18098 6.48984 6.74923 7.03308 7.21850 7.77962 7.97793 9.16122 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033639 B = 0.002926 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.164321 B = 9567.264119 C = 9892.434378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.215 4.215 3 C -0.020 4.020 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.129 4.129 7 C 0.503 3.497 8 O -0.594 6.594 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.126 4.126 12 C -0.131 4.131 13 C 0.169 3.831 14 H 0.029 0.971 15 N -0.750 5.750 16 C -0.229 4.229 17 H 0.053 0.947 18 C -0.065 4.065 19 N -0.983 5.983 20 Si 0.956 3.044 21 H -0.282 1.282 22 H -0.293 1.293 23 H -0.248 1.248 24 C 0.113 3.887 25 H 0.241 0.759 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.125 0.875 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.088 0.912 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.366 0.634 41 H 0.258 0.742 42 H 0.063 0.937 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.175 11.340 -4.155 29.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.215 4.215 3 C -0.056 4.056 4 C -0.139 4.139 5 C -0.140 4.140 6 C -0.168 4.168 7 C 0.293 3.707 8 O -0.475 6.475 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.165 4.165 12 C -0.171 4.171 13 C 0.060 3.940 14 H 0.047 0.953 15 N -0.394 5.394 16 C -0.360 4.360 17 H 0.071 0.929 18 C -0.256 4.256 19 N -0.633 5.633 20 Si 0.783 3.217 21 H -0.208 1.208 22 H -0.220 1.220 23 H -0.172 1.172 24 C -0.011 4.011 25 H 0.258 0.742 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.106 0.894 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.059 0.941 40 H 0.199 0.801 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.822 11.462 -3.625 29.393 hybrid contribution 1.402 0.244 0.017 1.423 sum -25.420 11.706 -3.608 28.217 Atomic orbital electron populations 1.25684 0.96939 1.00423 1.00226 1.23705 0.95503 1.01120 1.01203 1.18829 0.84114 1.02106 1.00558 1.21444 0.93691 1.00495 0.98281 1.21297 0.94986 1.00036 0.97700 1.21763 0.88038 1.04290 1.02726 1.21648 0.92147 0.77517 0.79357 1.90681 1.71818 1.45534 1.39437 1.48249 1.05781 1.49193 1.30886 1.22108 0.97857 0.90339 0.91280 1.21906 0.94190 0.97145 1.03253 1.22067 0.96039 1.00126 0.98832 1.20638 0.82373 0.94267 0.96727 0.95272 1.42658 1.02957 1.21734 1.72012 1.18940 0.89862 0.97328 1.29886 0.92855 1.25525 0.97073 1.00597 1.02404 1.69888 1.06827 1.32787 1.53811 0.85396 0.78192 0.79144 0.78965 1.20835 1.22005 1.17242 1.21593 0.80860 0.96354 1.02292 0.74229 0.89433 0.89107 0.90413 0.90852 0.92718 0.92114 0.85730 0.86473 0.85897 0.89421 0.92349 0.87927 0.91638 0.94110 0.80077 0.93295 0.91804 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.94 19.25 74.32 1.43 -1.51 16 2 C -0.22 -3.44 13.34 31.13 0.42 -3.03 16 3 C -0.02 -0.26 5.70 28.79 0.16 -0.10 16 4 C -0.10 -1.17 5.17 30.59 0.16 -1.02 16 5 C -0.10 -1.62 4.50 30.59 0.14 -1.48 16 6 C -0.13 -1.86 4.05 29.85 0.12 -1.73 16 7 C 0.50 13.05 7.70 87.66 0.67 13.73 16 8 O -0.59 -21.47 15.39 -3.02 -0.05 -21.52 16 9 N -0.61 -15.25 2.97 -818.81 -2.43 -17.69 16 10 C 0.11 1.68 6.34 86.36 0.55 2.23 16 11 C -0.13 -2.57 6.08 30.67 0.19 -2.39 16 12 C -0.13 -4.09 5.47 30.62 0.17 -3.92 16 13 C 0.17 6.50 2.92 45.09 0.13 6.63 16 14 H 0.03 1.28 8.08 -2.38 -0.02 1.26 16 15 N -0.75 -35.63 4.93 -322.50 -1.59 -37.22 16 16 C -0.23 -13.32 10.41 84.03 0.88 -12.44 16 17 H 0.05 3.42 8.06 -2.91 -0.02 3.39 16 18 C -0.06 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.98 -63.91 13.97 21.65 0.30 -63.61 16 20 Si 0.96 46.15 27.73 68.60 1.90 48.06 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 23 H -0.25 -10.66 6.52 99.48 0.65 -10.01 16 24 C 0.11 3.72 5.91 86.38 0.51 4.23 16 25 H 0.24 1.51 7.80 -4.42 -0.03 1.48 16 26 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 31 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 32 H 0.12 1.04 7.94 -2.39 -0.02 1.03 16 33 H 0.12 1.20 7.69 -2.38 -0.02 1.18 16 34 H 0.12 1.02 5.93 -2.39 -0.01 1.01 16 35 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 40 H 0.37 16.58 5.66 -92.71 -0.52 16.05 16 41 H 0.26 15.97 8.31 -92.70 -0.77 15.20 16 42 H 0.06 2.47 7.00 -2.39 -0.02 2.46 16 43 H 0.08 2.28 8.14 -2.38 -0.02 2.27 16 Total: -1.00 -78.54 352.18 4.51 -74.03 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.39 Total: 22.16 kcal Atomic # 6 Polarization: -10.19 SS G_CDS: 5.99 Total: -4.20 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.72 Total: -118.52 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 1.90 Total: 48.06 kcal Total: -78.54 4.51 -74.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207860796.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.861 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds