Wall clock time and date at job start Tue Mar 31 2020 00:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.47201 * 109.47093 * 240.00334 * 2 1 3 6 6 C 2.64600 * 109.47111 * 240.00343 * 2 1 3 7 7 C 4.07799 * 109.47117 * 240.00448 * 2 1 3 8 8 O 1.21616 * 120.00134 * 91.64873 * 7 6 5 9 9 N 1.34777 * 119.99823 * 271.64328 * 7 6 5 10 10 C 1.46921 * 120.63486 * 0.02562 * 9 7 6 11 11 C 1.53190 * 108.77509 * 233.58562 * 10 9 7 12 12 C 1.53048 * 109.31359 * 305.36212 * 11 10 9 13 13 C 1.53038 * 109.53519 * 61.36713 * 12 11 10 14 14 H 1.08992 * 109.50139 * 58.58994 * 13 12 11 15 15 N 1.46502 * 109.49276 * 178.65533 * 13 12 11 16 16 C 1.36940 * 119.99665 * 204.99550 * 15 13 12 17 17 H 1.08000 * 119.99982 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99915 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00260 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46944 * 60.00702 * 20 18 16 22 22 H 1.48511 * 109.47299 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47440 * 300.00451 * 20 18 16 24 24 C 1.46932 * 120.62668 * 179.72613 * 9 7 6 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 34 34 H 1.09002 * 109.58190 * 353.36596 * 10 9 7 35 35 H 1.08994 * 109.58912 * 113.65329 * 10 9 7 36 36 H 1.09003 * 109.49990 * 65.31528 * 11 10 9 37 37 H 1.09004 * 109.49630 * 185.37803 * 11 10 9 38 38 H 1.09000 * 109.46240 * 181.38696 * 12 11 10 39 39 H 1.09003 * 109.45360 * 301.35901 * 12 11 10 40 40 H 0.97002 * 120.00392 * 24.99862 * 15 13 12 41 41 H 0.96996 * 120.00195 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.58200 * 246.20560 * 24 9 7 43 43 H 1.08999 * 109.58692 * 6.62222 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0207 -0.6938 -1.2019 6 6 2.4121 -1.2472 -2.1605 7 6 2.8894 -1.9221 -3.3298 8 8 2.6205 -1.4894 -4.4341 9 7 3.6368 -3.0369 -3.2065 10 6 3.9696 -3.5721 -1.8794 11 6 5.4890 -3.7421 -1.7832 12 6 5.9766 -4.6052 -2.9493 13 6 5.6513 -3.9086 -4.2725 14 1 6.1290 -2.9291 -4.2951 15 7 6.1469 -4.7201 -5.3870 16 6 6.4462 -4.1281 -6.5850 17 1 6.3173 -3.0629 -6.7081 18 6 6.9163 -4.8969 -7.6408 19 7 7.0739 -6.1950 -7.4906 20 14 7.3252 -4.0893 -9.2747 21 1 8.3872 -3.0713 -9.0716 22 1 7.8036 -5.1203 -10.2306 23 1 6.1097 -3.4343 -9.8212 24 6 4.1287 -3.7437 -4.3970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2493 33 1 1.6767 -0.2075 2.1392 34 1 3.6302 -2.8784 -1.1101 35 1 3.4824 -4.5373 -1.7418 36 1 5.9683 -2.7642 -1.8291 37 1 5.7418 -4.2272 -0.8403 38 1 7.0542 -4.7483 -2.8695 39 1 5.4782 -5.5741 -2.9170 40 1 6.2631 -5.6768 -5.2763 41 1 7.4021 -6.7323 -8.2285 42 1 3.6561 -4.7238 -4.4613 43 1 3.8942 -3.1635 -5.2894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208008598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:06 Heat of formation + Delta-G solvation = 11.811456 kcal Electronic energy + Delta-G solvation = -21478.868540 eV Core-core repulsion = 18332.169565 eV Total energy + Delta-G solvation = -3146.698975 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88735 -37.81627 -37.25613 -34.49775 -32.62047 -31.97025 -31.13431 -28.31292 -27.67818 -27.66510 -25.82137 -24.02708 -22.95324 -21.89528 -20.73666 -19.46230 -17.67781 -17.08520 -16.32594 -15.84060 -15.25037 -14.72713 -14.61415 -14.51730 -14.16692 -14.05018 -13.59644 -13.42143 -12.89626 -12.82858 -12.71620 -12.45875 -12.31745 -12.07494 -12.07314 -11.63801 -11.58955 -11.38087 -11.06806 -10.82229 -10.68483 -10.59236 -10.46756 -10.36303 -10.22529 -9.94719 -9.82918 -9.65257 -9.07838 -8.38622 -7.00381 -5.78287 -3.08274 1.64652 2.28287 3.10094 3.47025 3.50648 3.52850 3.62301 3.91796 4.55251 4.57196 4.58864 4.62077 4.92544 5.03796 5.09856 5.22275 5.24046 5.28997 5.37468 5.46922 5.47410 5.47654 5.54642 5.60859 5.67821 5.72573 5.79418 5.89113 5.89954 5.91551 6.03494 6.15680 6.20204 6.33933 6.47451 6.69949 6.80639 6.98189 7.19743 7.56605 7.72213 8.28282 8.40019 9.51726 10.05087 10.40605 11.43864 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.003497 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.781908 B = 8004.000479 C = 8574.644603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 C -0.142 4.142 4 C -0.141 4.141 5 C -0.091 4.091 6 C -0.201 4.201 7 C 0.623 3.377 8 O -0.526 6.526 9 N -0.594 5.594 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.126 4.126 13 C 0.168 3.832 14 H 0.053 0.947 15 N -0.717 5.717 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.284 1.284 24 C 0.092 3.908 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.386 0.614 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.099 9.254 21.244 25.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.039 3.961 3 C -0.199 4.199 4 C -0.199 4.199 5 C -0.094 4.094 6 C -0.204 4.204 7 C 0.410 3.590 8 O -0.404 6.404 9 N -0.326 5.326 10 C -0.015 4.015 11 C -0.168 4.168 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.071 0.929 15 N -0.358 5.358 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.211 1.211 24 C -0.032 4.032 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.084 0.916 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.156 9.538 20.450 24.745 hybrid contribution 0.239 -0.016 -0.940 0.970 sum -9.917 9.522 19.510 23.867 Atomic orbital electron populations 1.21903 0.92408 1.02818 1.02749 1.17884 0.95891 0.94358 0.87923 1.21904 1.01819 0.93454 1.02741 1.21907 1.01804 1.00620 0.95526 1.22421 0.95592 0.96574 0.94768 1.20897 1.03125 1.01353 0.95068 1.14874 0.78696 0.80192 0.85222 1.90859 1.57886 1.65737 1.25927 1.48160 1.50408 1.25453 1.08603 1.21742 0.96395 0.99385 0.83968 1.21880 0.94637 1.01127 0.99133 1.21837 1.01566 0.98724 0.94348 1.20588 0.90665 0.95407 0.87637 0.92942 1.42371 1.76872 1.07391 1.09118 1.19242 1.36583 0.92764 0.88965 0.91033 1.24745 1.01917 0.95552 0.98380 1.69649 1.52132 1.04219 1.32046 0.86259 0.78285 0.78019 0.83607 1.21184 1.21673 1.21061 1.23008 0.97574 0.96069 0.86510 0.91892 0.91968 0.91248 0.91255 0.91904 0.91880 0.91919 0.91864 0.91273 0.90387 0.91197 0.91556 0.90886 0.91268 0.91933 0.78021 0.93392 0.91602 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 8.43 37.16 0.31 -0.67 16 2 C 0.04 0.32 0.95 -157.29 -0.15 0.17 16 3 C -0.14 -1.01 8.43 37.16 0.31 -0.70 16 4 C -0.14 -0.88 8.43 37.16 0.31 -0.57 16 5 C -0.09 -1.09 11.71 -37.12 -0.43 -1.53 16 6 C -0.20 -3.01 11.57 -38.84 -0.45 -3.45 16 7 C 0.62 11.25 7.55 -14.33 -0.11 11.15 16 8 O -0.53 -11.61 16.50 5.26 0.09 -11.52 16 9 N -0.59 -9.83 2.97 -175.36 -0.52 -10.35 16 10 C 0.11 1.35 6.32 -3.71 -0.02 1.33 16 11 C -0.13 -1.59 6.08 -26.61 -0.16 -1.75 16 12 C -0.13 -1.99 5.35 -26.69 -0.14 -2.14 16 13 C 0.17 3.38 2.93 -67.57 -0.20 3.18 16 14 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 15 N -0.72 -17.89 5.12 -53.08 -0.27 -18.17 16 16 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 17 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 18 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 19 N -0.93 -28.11 13.06 55.49 0.72 -27.38 16 20 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 C 0.09 1.79 6.05 -3.47 -0.02 1.77 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 0.86 6.32 -51.93 -0.33 0.53 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.39 10.07 7.80 -40.82 -0.32 9.75 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.09 2.11 7.00 -51.93 -0.36 1.74 16 LS Contribution 355.23 15.07 5.35 5.35 Total: -1.00 -32.69 355.23 -7.96 -40.65 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -7.32 Total: 4.23 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.99 Total: -0.60 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: -0.07 Total: -55.90 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.69 -7.96 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208008598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.463 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds