Wall clock time and date at job start Tue Mar 31 2020 00:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 C 1.47201 * 109.47093 * 240.00334 * 2 1 3 6 6 C 2.64600 * 109.47111 * 240.00343 * 2 1 3 7 7 C 4.07799 * 109.47117 * 240.00448 * 2 1 3 8 8 O 1.21616 * 120.00134 * 91.64873 * 7 6 5 9 9 N 1.34777 * 119.99823 * 271.64328 * 7 6 5 10 10 C 1.46921 * 120.63486 * 0.02562 * 9 7 6 11 11 C 1.53190 * 108.77509 * 233.58562 * 10 9 7 12 12 C 1.53048 * 109.31359 * 305.36212 * 11 10 9 13 13 C 1.53038 * 109.53519 * 61.36713 * 12 11 10 14 14 H 1.08992 * 109.50139 * 58.58994 * 13 12 11 15 15 N 1.46502 * 109.49276 * 178.65533 * 13 12 11 16 16 C 1.36940 * 119.99665 * 204.99550 * 15 13 12 17 17 H 1.08000 * 119.99982 * 0.02562 * 16 15 13 18 18 C 1.38808 * 119.99915 * 179.97438 * 16 15 13 19 19 N 1.31618 * 120.00260 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99885 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46944 * 60.00702 * 20 18 16 22 22 H 1.48511 * 109.47299 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47440 * 300.00451 * 20 18 16 24 24 C 1.46932 * 120.62668 * 179.72613 * 9 7 6 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 31 31 H 1.09001 * 109.47375 * 59.99966 * 4 2 1 32 32 H 1.09002 * 109.46777 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47140 * 299.99948 * 4 2 1 34 34 H 1.09002 * 109.58190 * 353.36596 * 10 9 7 35 35 H 1.08994 * 109.58912 * 113.65329 * 10 9 7 36 36 H 1.09003 * 109.49990 * 65.31528 * 11 10 9 37 37 H 1.09004 * 109.49630 * 185.37803 * 11 10 9 38 38 H 1.09000 * 109.46240 * 181.38696 * 12 11 10 39 39 H 1.09003 * 109.45360 * 301.35901 * 12 11 10 40 40 H 0.97002 * 120.00392 * 24.99862 * 15 13 12 41 41 H 0.96996 * 120.00195 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.58200 * 246.20560 * 24 9 7 43 43 H 1.08999 * 109.58692 * 6.62222 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0207 -0.6938 -1.2019 6 6 2.4121 -1.2472 -2.1605 7 6 2.8894 -1.9221 -3.3298 8 8 2.6205 -1.4894 -4.4341 9 7 3.6368 -3.0369 -3.2065 10 6 3.9696 -3.5721 -1.8794 11 6 5.4890 -3.7421 -1.7832 12 6 5.9766 -4.6052 -2.9493 13 6 5.6513 -3.9086 -4.2725 14 1 6.1290 -2.9291 -4.2951 15 7 6.1469 -4.7201 -5.3870 16 6 6.4462 -4.1281 -6.5850 17 1 6.3173 -3.0629 -6.7081 18 6 6.9163 -4.8969 -7.6408 19 7 7.0739 -6.1950 -7.4906 20 14 7.3252 -4.0893 -9.2747 21 1 8.3872 -3.0713 -9.0716 22 1 7.8036 -5.1203 -10.2306 23 1 6.1097 -3.4343 -9.8212 24 6 4.1287 -3.7437 -4.3970 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 -1.7490 1.2492 32 1 3.1301 -0.7209 1.2493 33 1 1.6767 -0.2075 2.1392 34 1 3.6302 -2.8784 -1.1101 35 1 3.4824 -4.5373 -1.7418 36 1 5.9683 -2.7642 -1.8291 37 1 5.7418 -4.2272 -0.8403 38 1 7.0542 -4.7483 -2.8695 39 1 5.4782 -5.5741 -2.9170 40 1 6.2631 -5.6768 -5.2763 41 1 7.4021 -6.7323 -8.2285 42 1 3.6561 -4.7238 -4.4613 43 1 3.8942 -3.1635 -5.2894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208008598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:05 Heat of formation + Delta-G solvation = -8.485078 kcal Electronic energy + Delta-G solvation = -21479.748664 eV Core-core repulsion = 18332.169565 eV Total energy + Delta-G solvation = -3147.579099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.28699 -38.80559 -38.44372 -36.28008 -34.15270 -33.14938 -32.79860 -30.06172 -28.19639 -28.15150 -27.17366 -25.91562 -24.13043 -23.33243 -21.88346 -20.79855 -19.20117 -18.90252 -17.60796 -16.84531 -16.72371 -16.39061 -15.67461 -15.51413 -15.32436 -15.19966 -15.14621 -15.08072 -14.14563 -14.07973 -13.76206 -13.34001 -13.30063 -13.12163 -12.91010 -12.72935 -12.58973 -12.55231 -12.31043 -12.24972 -12.24156 -12.06000 -11.95381 -11.76444 -11.56297 -11.40633 -11.31552 -11.10396 -11.08091 -9.88707 -9.05808 -8.00229 -5.29833 0.44481 1.19997 1.43699 1.46670 1.52754 1.85273 2.39709 2.52215 2.91364 3.32531 3.69452 3.81049 3.97155 3.97771 3.99769 4.02332 4.13399 4.25557 4.31895 4.33957 4.53360 4.67478 4.75808 4.78034 4.81676 4.84192 4.86525 4.98491 4.98958 4.99518 5.07807 5.10545 5.22282 5.32799 5.37019 5.37607 5.41122 5.41446 5.50626 6.14838 6.22157 6.23124 6.89736 7.29260 8.00141 8.26468 9.22088 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028513 B = 0.003497 C = 0.003265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.781908 B = 8004.000479 C = 8574.644603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.032 3.968 3 C -0.142 4.142 4 C -0.139 4.139 5 C -0.037 4.037 6 C -0.260 4.260 7 C 0.620 3.380 8 O -0.584 6.584 9 N -0.590 5.590 10 C 0.104 3.896 11 C -0.118 4.118 12 C -0.118 4.118 13 C 0.167 3.833 14 H 0.033 0.967 15 N -0.727 5.727 16 C -0.250 4.250 17 H 0.065 0.935 18 C -0.065 4.065 19 N -0.963 5.963 20 Si 0.968 3.032 21 H -0.277 1.277 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.106 3.894 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.061 0.939 37 H 0.115 0.885 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.379 0.621 41 H 0.254 0.746 42 H 0.068 0.932 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.728 10.083 24.732 28.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.032 3.968 3 C -0.200 4.200 4 C -0.196 4.196 5 C -0.040 4.040 6 C -0.263 4.263 7 C 0.410 3.590 8 O -0.466 6.466 9 N -0.321 5.321 10 C -0.017 4.017 11 C -0.157 4.157 12 C -0.156 4.156 13 C 0.058 3.942 14 H 0.051 0.949 15 N -0.367 5.367 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.258 4.258 19 N -0.612 5.612 20 Si 0.797 3.203 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.210 1.210 24 C -0.019 4.019 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.212 0.788 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.787 10.379 24.008 28.293 hybrid contribution 0.363 -0.195 -1.881 1.926 sum -10.425 10.185 22.127 26.495 Atomic orbital electron populations 1.21941 0.91170 1.03068 1.03681 1.18329 0.96816 0.94771 0.86875 1.21945 1.01640 0.92686 1.03682 1.21934 1.01839 1.00781 0.95085 1.23367 0.92410 0.93912 0.94298 1.20325 1.06171 1.03972 0.95809 1.15244 0.78096 0.80117 0.85567 1.90812 1.60142 1.67315 1.28324 1.48171 1.49702 1.24939 1.09322 1.22085 0.96829 1.00763 0.82040 1.21861 0.94051 1.00524 0.99251 1.21748 1.01666 0.99290 0.92905 1.20738 0.90425 0.94419 0.88666 0.94924 1.42481 1.77324 1.07362 1.09554 1.19491 1.35653 0.92623 0.90380 0.91717 1.25479 1.02650 0.96177 1.01529 1.69776 1.53445 1.05269 1.32748 0.85303 0.78024 0.77223 0.79774 1.20334 1.21437 1.21009 1.22502 0.97189 0.95626 0.86613 0.93029 0.92107 0.88345 0.88314 0.92278 0.93041 0.91746 0.91893 0.88698 0.88133 0.89165 0.92030 0.86642 0.91555 0.91055 0.78827 0.93731 0.91370 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.43 71.98 0.61 -0.90 16 2 C 0.03 0.42 0.95 -53.99 -0.05 0.37 16 3 C -0.14 -1.59 8.43 71.98 0.61 -0.98 16 4 C -0.14 -1.15 8.43 71.98 0.61 -0.54 16 5 C -0.04 -0.83 11.71 31.13 0.36 -0.46 16 6 C -0.26 -7.69 11.57 30.02 0.35 -7.34 16 7 C 0.62 23.26 7.55 85.49 0.65 23.91 16 8 O -0.58 -27.54 16.50 -4.08 -0.07 -27.61 16 9 N -0.59 -19.78 2.97 -826.97 -2.45 -22.23 16 10 C 0.10 2.36 6.32 86.36 0.55 2.91 16 11 C -0.12 -2.59 6.08 30.67 0.19 -2.41 16 12 C -0.12 -3.58 5.35 30.62 0.16 -3.42 16 13 C 0.17 6.91 2.93 45.22 0.13 7.04 16 14 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 15 N -0.73 -37.47 5.12 -321.84 -1.65 -39.12 16 16 C -0.25 -14.49 9.93 84.03 0.83 -13.65 16 17 H 0.06 3.76 7.83 -2.91 -0.02 3.74 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.96 -59.20 13.06 21.65 0.28 -58.92 16 20 Si 0.97 47.84 29.55 68.60 2.03 49.87 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 24 C 0.11 4.29 6.05 86.52 0.52 4.81 16 25 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.10 1.89 6.32 -2.39 -0.02 1.88 16 35 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.38 20.33 7.80 -92.71 -0.72 19.60 16 41 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 42 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 43 H 0.05 2.56 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -75.21 355.23 4.38 -70.83 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.26 Total: 21.23 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: 5.98 Total: 5.94 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -3.82 Total: -120.27 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.07 Total: -27.61 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.87 kcal Total: -75.21 4.38 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208008598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.346 kcal (2) G-P(sol) polarization free energy of solvation -75.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds