Wall clock time and date at job start Tue Mar 31 2020 00:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46773 * 240.00259 * 2 1 3 5 5 C 1.47198 * 109.47363 * 120.00278 * 2 1 3 6 6 C 2.64595 * 109.47098 * 120.00140 * 2 1 3 7 7 C 4.07795 * 109.47160 * 120.00118 * 2 1 3 8 8 O 1.21612 * 120.00236 * 191.67189 * 7 6 5 9 9 N 1.34784 * 120.00197 * 11.66958 * 7 6 5 10 10 C 1.46928 * 120.62829 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77343 * 126.41175 * 10 9 7 12 12 C 1.53039 * 109.31416 * 54.63452 * 11 10 9 13 13 C 1.53070 * 109.65812 * 298.69913 * 12 11 10 14 14 H 1.08997 * 109.38860 * 301.27396 * 13 12 11 15 15 N 1.46498 * 109.62217 * 181.16721 * 13 12 11 16 16 C 1.36939 * 119.99851 * 155.10673 * 15 13 12 17 17 H 1.07992 * 120.00264 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99706 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00152 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46922 * 89.99961 * 20 18 16 22 22 H 1.48496 * 109.47383 * 209.99804 * 20 18 16 23 23 H 1.48502 * 109.47189 * 330.00249 * 20 18 16 24 24 C 1.46919 * 120.63188 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.46945 * 299.99447 * 1 2 3 26 26 H 1.09000 * 109.47142 * 60.00302 * 1 2 3 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47326 * 300.00092 * 3 2 1 30 30 H 1.09005 * 109.47203 * 60.00247 * 3 2 1 31 31 H 1.09000 * 109.46999 * 299.99431 * 4 2 1 32 32 H 1.08997 * 109.47208 * 60.00325 * 4 2 1 33 33 H 1.09001 * 109.46625 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.58787 * 246.20220 * 10 9 7 35 35 H 1.09007 * 109.58600 * 6.48533 * 10 9 7 36 36 H 1.09002 * 109.49529 * 174.58688 * 11 10 9 37 37 H 1.09001 * 109.49774 * 294.68244 * 11 10 9 38 38 H 1.09007 * 109.45640 * 58.65727 * 12 11 10 39 39 H 1.09000 * 109.45893 * 178.62518 * 12 11 10 40 40 H 0.96999 * 119.99859 * 335.11091 * 15 13 12 41 41 H 0.96990 * 120.00564 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58751 * 353.37646 * 24 9 7 43 43 H 1.08996 * 109.58750 * 113.65831 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0208 -0.6939 1.2018 6 6 2.4120 -1.2474 2.1604 7 6 2.8894 -1.9224 3.3296 8 8 3.8338 -1.4716 3.9491 9 7 2.2920 -3.0575 3.7435 10 6 1.1497 -3.6142 3.0060 11 6 1.4506 -5.0762 2.6613 12 6 1.8024 -5.8362 3.9422 13 6 3.0523 -5.2228 4.5781 14 1 3.8787 -5.2687 3.8688 15 7 3.4045 -5.9683 5.7890 16 6 4.6971 -5.9687 6.2411 17 1 5.4568 -5.4192 5.7053 18 6 5.0309 -6.6755 7.3883 19 7 6.2734 -6.6763 7.8226 20 14 3.7168 -7.6254 8.3157 21 1 3.6393 -9.0100 7.7846 22 1 4.0623 -7.6676 9.7593 23 1 2.4039 -6.9539 8.1403 24 6 2.7700 -3.7611 4.9415 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 0.2542 -3.5616 3.6252 35 1 0.9941 -3.0450 2.0894 36 1 0.5734 -5.5289 2.1989 37 1 2.2914 -5.1211 1.9690 38 1 0.9707 -5.7699 4.6437 39 1 1.9931 -6.8824 3.7029 40 1 2.7221 -6.4616 6.2705 41 1 6.5067 -7.1704 8.6239 42 1 3.6852 -3.2905 5.3009 43 1 2.0075 -3.7183 5.7191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208008600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:10 Heat of formation + Delta-G solvation = 16.419766 kcal Electronic energy + Delta-G solvation = -21517.520005 eV Core-core repulsion = 18371.020862 eV Total energy + Delta-G solvation = -3146.499144 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.94825 -37.83764 -37.35662 -34.65420 -32.64097 -32.02373 -31.32055 -28.83776 -27.69369 -27.66931 -25.89120 -23.96057 -22.96501 -21.75390 -20.78422 -19.61714 -17.72165 -17.54634 -16.35293 -15.87548 -15.26875 -14.73674 -14.62406 -14.59455 -14.29359 -14.09435 -13.90841 -13.18193 -12.91667 -12.82782 -12.72310 -12.65029 -12.46305 -12.09095 -12.08542 -11.75578 -11.60203 -11.58875 -11.24511 -10.93921 -10.76174 -10.68146 -10.49307 -10.38416 -10.32372 -9.95375 -9.87167 -9.58904 -9.12568 -8.45269 -7.31172 -5.77400 -3.15238 1.62471 2.25956 3.05458 3.36371 3.38539 3.44789 3.59932 3.88745 4.53752 4.56244 4.57466 4.60426 4.79550 4.98575 5.01558 5.19857 5.21088 5.23250 5.35154 5.36381 5.43901 5.45937 5.46522 5.50497 5.64322 5.68791 5.70968 5.80113 5.87482 5.88293 5.89338 6.00742 6.05616 6.22066 6.35883 6.60522 6.69550 6.86897 7.17624 7.51251 7.98261 8.25204 8.41234 9.18092 9.89500 10.07819 11.40561 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.003522 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.583841 B = 7947.733526 C = 8402.318101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.039 3.961 3 C -0.143 4.143 4 C -0.141 4.141 5 C -0.090 4.090 6 C -0.202 4.202 7 C 0.624 3.376 8 O -0.522 6.522 9 N -0.595 5.595 10 C 0.108 3.892 11 C -0.129 4.129 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.061 0.939 15 N -0.741 5.741 16 C -0.249 4.249 17 H 0.092 0.908 18 C 0.008 3.992 19 N -0.930 5.930 20 Si 0.885 3.115 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.093 3.907 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.098 0.902 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 10.977 -18.786 27.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.039 3.961 3 C -0.200 4.200 4 C -0.199 4.199 5 C -0.092 4.092 6 C -0.205 4.205 7 C 0.411 3.589 8 O -0.399 6.399 9 N -0.328 5.328 10 C -0.015 4.015 11 C -0.167 4.167 12 C -0.168 4.168 13 C 0.062 3.938 14 H 0.079 0.921 15 N -0.383 5.383 16 C -0.379 4.379 17 H 0.110 0.890 18 C -0.189 4.189 19 N -0.577 5.577 20 Si 0.715 3.285 21 H -0.210 1.210 22 H -0.217 1.217 23 H -0.203 1.203 24 C -0.031 4.031 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.116 0.884 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.434 11.203 -18.364 26.475 hybrid contribution -0.864 -0.727 0.879 1.432 sum -16.298 10.475 -17.485 26.098 Atomic orbital electron populations 1.21901 0.92377 1.02803 1.02719 1.17889 0.95833 0.94380 0.87978 1.21914 1.01956 0.93476 1.02632 1.21900 1.01917 1.00610 0.95425 1.22424 0.96646 0.96611 0.93527 1.20863 1.01862 1.01310 0.96470 1.14859 0.82373 0.80315 0.81332 1.90877 1.27308 1.65754 1.55980 1.48097 1.32234 1.23623 1.28842 1.21743 0.88501 0.94839 0.96432 1.21866 1.01994 0.94409 0.98476 1.21877 0.98709 1.00023 0.96232 1.20473 0.95014 0.88888 0.89427 0.92094 1.42720 1.08272 1.58784 1.28547 1.19109 0.84637 1.26749 1.07412 0.88995 1.24688 0.95957 1.00223 0.97992 1.69702 1.16522 1.46194 1.25314 0.86551 0.81765 0.80412 0.79773 1.21049 1.21698 1.20296 1.22811 1.01003 0.94699 0.84594 0.91981 0.91239 0.91900 0.91833 0.91297 0.91955 0.91876 0.91225 0.91867 0.91245 0.90248 0.90787 0.91325 0.92062 0.91167 0.80421 0.92970 0.88371 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.86 8.43 37.16 0.31 -0.55 16 2 C 0.04 0.31 0.95 -157.29 -0.15 0.16 16 3 C -0.14 -1.01 8.43 37.16 0.31 -0.70 16 4 C -0.14 -0.94 8.43 37.16 0.31 -0.63 16 5 C -0.09 -1.06 11.71 -37.12 -0.43 -1.49 16 6 C -0.20 -2.97 11.57 -38.84 -0.45 -3.42 16 7 C 0.62 11.12 7.55 -14.33 -0.11 11.01 16 8 O -0.52 -11.49 16.50 5.27 0.09 -11.41 16 9 N -0.60 -9.56 2.97 -175.61 -0.52 -10.09 16 10 C 0.11 1.28 6.33 -3.71 -0.02 1.26 16 11 C -0.13 -1.48 6.08 -26.61 -0.16 -1.65 16 12 C -0.13 -1.90 5.36 -26.67 -0.14 -2.04 16 13 C 0.17 3.32 2.93 -67.77 -0.20 3.12 16 14 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 15 N -0.74 -17.34 4.93 -53.27 -0.26 -17.60 16 16 C -0.25 -7.08 10.41 -15.06 -0.16 -7.23 16 17 H 0.09 2.85 8.06 -52.49 -0.42 2.42 16 18 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -29.50 13.97 55.49 0.78 -28.72 16 20 Si 0.88 21.97 27.74 -169.99 -4.71 17.26 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 24 C 0.09 1.74 6.01 -3.69 -0.02 1.72 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.83 6.32 -51.92 -0.33 0.50 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.36 8.21 5.67 -40.82 -0.23 7.98 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.50 16 42 H 0.10 2.19 7.00 -51.93 -0.36 1.83 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -33.92 352.10 -7.61 -41.53 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.28 Total: 4.03 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.00 Total: -0.31 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: -0.01 Total: -56.41 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.92 -7.61 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208008600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.953 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds