Wall clock time and date at job start Tue Mar 31 2020 00:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46773 * 240.00259 * 2 1 3 5 5 C 1.47198 * 109.47363 * 120.00278 * 2 1 3 6 6 C 2.64595 * 109.47098 * 120.00140 * 2 1 3 7 7 C 4.07795 * 109.47160 * 120.00118 * 2 1 3 8 8 O 1.21612 * 120.00236 * 191.67189 * 7 6 5 9 9 N 1.34784 * 120.00197 * 11.66958 * 7 6 5 10 10 C 1.46928 * 120.62829 * 359.97438 * 9 7 6 11 11 C 1.53191 * 108.77343 * 126.41175 * 10 9 7 12 12 C 1.53039 * 109.31416 * 54.63452 * 11 10 9 13 13 C 1.53070 * 109.65812 * 298.69913 * 12 11 10 14 14 H 1.08997 * 109.38860 * 301.27396 * 13 12 11 15 15 N 1.46498 * 109.62217 * 181.16721 * 13 12 11 16 16 C 1.36939 * 119.99851 * 155.10673 * 15 13 12 17 17 H 1.07992 * 120.00264 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99706 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00152 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00213 * 359.97438 * 18 16 15 21 21 H 1.48498 * 109.46922 * 89.99961 * 20 18 16 22 22 H 1.48496 * 109.47383 * 209.99804 * 20 18 16 23 23 H 1.48502 * 109.47189 * 330.00249 * 20 18 16 24 24 C 1.46919 * 120.63188 * 180.02562 * 9 7 6 25 25 H 1.09000 * 109.46945 * 299.99447 * 1 2 3 26 26 H 1.09000 * 109.47142 * 60.00302 * 1 2 3 27 27 H 1.09003 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47326 * 300.00092 * 3 2 1 30 30 H 1.09005 * 109.47203 * 60.00247 * 3 2 1 31 31 H 1.09000 * 109.46999 * 299.99431 * 4 2 1 32 32 H 1.08997 * 109.47208 * 60.00325 * 4 2 1 33 33 H 1.09001 * 109.46625 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.58787 * 246.20220 * 10 9 7 35 35 H 1.09007 * 109.58600 * 6.48533 * 10 9 7 36 36 H 1.09002 * 109.49529 * 174.58688 * 11 10 9 37 37 H 1.09001 * 109.49774 * 294.68244 * 11 10 9 38 38 H 1.09007 * 109.45640 * 58.65727 * 12 11 10 39 39 H 1.09000 * 109.45893 * 178.62518 * 12 11 10 40 40 H 0.96999 * 119.99859 * 335.11091 * 15 13 12 41 41 H 0.96990 * 120.00564 * 180.02562 * 19 18 16 42 42 H 1.09002 * 109.58751 * 353.37646 * 24 9 7 43 43 H 1.08996 * 109.58750 * 113.65831 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0208 -0.6939 1.2018 6 6 2.4120 -1.2474 2.1604 7 6 2.8894 -1.9224 3.3296 8 8 3.8338 -1.4716 3.9491 9 7 2.2920 -3.0575 3.7435 10 6 1.1497 -3.6142 3.0060 11 6 1.4506 -5.0762 2.6613 12 6 1.8024 -5.8362 3.9422 13 6 3.0523 -5.2228 4.5781 14 1 3.8787 -5.2687 3.8688 15 7 3.4045 -5.9683 5.7890 16 6 4.6971 -5.9687 6.2411 17 1 5.4568 -5.4192 5.7053 18 6 5.0309 -6.6755 7.3883 19 7 6.2734 -6.6763 7.8226 20 14 3.7168 -7.6254 8.3157 21 1 3.6393 -9.0100 7.7846 22 1 4.0623 -7.6676 9.7593 23 1 2.4039 -6.9539 8.1403 24 6 2.7700 -3.7611 4.9415 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 0.2542 -3.5616 3.6252 35 1 0.9941 -3.0450 2.0894 36 1 0.5734 -5.5289 2.1989 37 1 2.2914 -5.1211 1.9690 38 1 0.9707 -5.7699 4.6437 39 1 1.9931 -6.8824 3.7029 40 1 2.7221 -6.4616 6.2705 41 1 6.5067 -7.1704 8.6239 42 1 3.6852 -3.2905 5.3009 43 1 2.0075 -3.7183 5.7191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208008600.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:09 Heat of formation + Delta-G solvation = -6.020836 kcal Electronic energy + Delta-G solvation = -21518.493103 eV Core-core repulsion = 18371.020862 eV Total energy + Delta-G solvation = -3147.472241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.31523 -38.88181 -38.45374 -36.39581 -34.20108 -33.21439 -32.99197 -30.51484 -28.19813 -28.15730 -27.19255 -25.72767 -24.14175 -23.20441 -21.98479 -20.91783 -19.59956 -18.94122 -17.62342 -16.81290 -16.73205 -16.47362 -15.83791 -15.57863 -15.28289 -15.19884 -15.16547 -14.89094 -14.32146 -14.16187 -13.94001 -13.46722 -13.29354 -13.27928 -12.99358 -12.73788 -12.59491 -12.57043 -12.29106 -12.24903 -12.18176 -11.97603 -11.93448 -11.83964 -11.61174 -11.40614 -11.31952 -11.12955 -11.09475 -9.96019 -9.32340 -8.05728 -5.42802 0.43603 1.18830 1.36567 1.42503 1.49506 1.83023 2.38999 2.46556 2.90340 3.24542 3.47669 3.78573 3.95633 3.97242 3.98044 4.01083 4.03868 4.18536 4.29422 4.31836 4.52699 4.63453 4.75347 4.77575 4.79904 4.84693 4.86482 4.96316 4.98274 4.98998 5.07128 5.09900 5.21897 5.30911 5.35923 5.37395 5.40126 5.40565 5.72353 6.13911 6.17243 6.21533 6.88859 7.03058 7.74504 7.97772 9.16102 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.032266 B = 0.003522 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.583841 B = 7947.733526 C = 8402.318101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.032 3.968 3 C -0.144 4.144 4 C -0.141 4.141 5 C -0.037 4.037 6 C -0.260 4.260 7 C 0.619 3.381 8 O -0.585 6.585 9 N -0.591 5.591 10 C 0.102 3.898 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.169 3.831 14 H 0.031 0.969 15 N -0.741 5.741 16 C -0.241 4.241 17 H 0.043 0.957 18 C -0.064 4.064 19 N -0.985 5.985 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.297 1.297 23 H -0.245 1.245 24 C 0.104 3.896 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.372 0.628 41 H 0.260 0.740 42 H 0.047 0.953 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.948 10.735 -21.214 31.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.032 3.968 3 C -0.201 4.201 4 C -0.198 4.198 5 C -0.039 4.039 6 C -0.263 4.263 7 C 0.409 3.591 8 O -0.467 6.467 9 N -0.322 5.322 10 C -0.018 4.018 11 C -0.158 4.158 12 C -0.159 4.159 13 C 0.060 3.940 14 H 0.049 0.951 15 N -0.384 5.384 16 C -0.372 4.372 17 H 0.062 0.938 18 C -0.256 4.256 19 N -0.635 5.635 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.224 1.224 23 H -0.169 1.169 24 C -0.021 4.021 25 H 0.076 0.924 26 H 0.114 0.886 27 H 0.086 0.914 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.116 0.884 33 H 0.069 0.931 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.137 0.863 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.206 0.794 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.243 10.961 -20.862 31.067 hybrid contribution 0.645 -0.526 1.468 1.688 sum -19.598 10.435 -19.394 29.480 Atomic orbital electron populations 1.21926 0.90209 1.03562 1.03847 1.18330 0.97467 0.94457 0.86521 1.21961 1.01270 0.93020 1.03862 1.21935 1.01223 1.01028 0.95582 1.23369 0.93743 0.93999 0.92804 1.20305 1.04880 1.03875 0.97234 1.15268 0.81542 0.80488 0.81806 1.90830 1.30126 1.67537 1.58196 1.48139 1.32971 1.22978 1.28097 1.22127 0.87350 0.95097 0.97264 1.21869 1.03542 0.93726 0.96696 1.21813 0.96196 1.00166 0.97739 1.20639 0.96751 0.89078 0.87530 0.95122 1.42610 1.06426 1.59560 1.29840 1.18960 0.86017 1.25291 1.06930 0.93841 1.25649 0.98722 1.01954 0.99254 1.69918 1.19485 1.47941 1.26148 0.85272 0.79489 0.78981 0.77149 1.19826 1.22386 1.16888 1.22368 0.99359 0.94214 0.86201 0.92449 0.88620 0.91364 0.93064 0.88301 0.92569 0.91595 0.88402 0.93093 0.88714 0.88292 0.86261 0.92308 0.90064 0.90730 0.79354 0.93176 0.93402 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.43 71.98 0.61 -0.53 16 2 C 0.03 0.42 0.95 -53.99 -0.05 0.36 16 3 C -0.14 -1.68 8.43 71.98 0.61 -1.08 16 4 C -0.14 -1.41 8.43 71.98 0.61 -0.80 16 5 C -0.04 -0.81 11.71 31.13 0.36 -0.45 16 6 C -0.26 -7.69 11.57 30.02 0.35 -7.34 16 7 C 0.62 23.29 7.55 85.49 0.65 23.94 16 8 O -0.58 -28.17 16.50 -4.07 -0.07 -28.24 16 9 N -0.59 -19.25 2.97 -827.76 -2.46 -21.71 16 10 C 0.10 2.14 6.33 86.36 0.55 2.69 16 11 C -0.12 -2.34 6.08 30.67 0.19 -2.16 16 12 C -0.12 -3.21 5.36 30.63 0.16 -3.04 16 13 C 0.17 6.63 2.93 45.10 0.13 6.76 16 14 H 0.03 1.37 8.08 -2.39 -0.02 1.35 16 15 N -0.74 -35.02 4.93 -322.45 -1.59 -36.61 16 16 C -0.24 -14.37 10.41 84.03 0.88 -13.49 16 17 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 18 C -0.06 -3.90 5.50 84.86 0.47 -3.44 16 19 N -0.99 -65.37 13.97 21.65 0.30 -65.07 16 20 Si 0.97 45.59 27.74 68.60 1.90 47.49 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 22 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 23 H -0.24 -10.15 6.52 99.48 0.65 -9.51 16 24 C 0.10 4.06 6.01 86.38 0.52 4.58 16 25 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.74 6.32 -2.38 -0.02 1.73 16 36 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.37 16.16 5.67 -92.71 -0.53 15.64 16 41 H 0.26 16.26 8.31 -92.72 -0.77 15.49 16 42 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 Total: -1.00 -82.06 352.10 4.50 -77.56 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.40 Total: 20.57 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 6.02 Total: 6.02 kcal Atomic # 7 Polarization: -119.65 SS G_CDS: -3.75 Total: -123.40 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.07 Total: -28.24 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -82.06 4.50 -77.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208008600.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.539 kcal (2) G-P(sol) polarization free energy of solvation -82.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds