Wall clock time and date at job start Tue Mar 31 2020 01:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47111 * 120.00151 * 2 1 4 4 C 1.50705 * 120.00149 * 5.48983 * 3 2 1 5 5 C 1.32867 * 120.00140 * 185.49573 * 3 2 1 6 6 C 1.50706 * 119.99809 * 6.24760 * 5 3 2 7 7 C 1.50699 * 109.47270 * 126.13000 * 6 5 3 8 8 O 1.21281 * 119.99882 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63429 * 359.97438 * 9 7 6 11 11 C 1.53185 * 108.77691 * 233.63670 * 10 9 7 12 12 C 1.53043 * 109.31224 * 305.36120 * 11 10 9 13 13 C 1.53045 * 109.53413 * 61.36878 * 12 11 10 14 14 H 1.09001 * 109.49698 * 58.62024 * 13 12 11 15 15 N 1.46510 * 109.49285 * 178.68199 * 13 12 11 16 16 C 1.36936 * 119.99390 * 204.99894 * 15 13 12 17 17 H 1.08000 * 120.00625 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99488 * 180.02562 * 16 15 13 19 19 N 1.31612 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47340 * 90.00155 * 20 18 16 22 22 H 1.48504 * 109.46873 * 210.00247 * 20 18 16 23 23 H 1.48502 * 109.47350 * 329.99348 * 20 18 16 24 24 C 1.46934 * 120.62844 * 180.02562 * 9 7 6 25 25 H 1.07997 * 120.00101 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99895 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99388 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47222 * 270.00470 * 4 3 2 29 29 H 1.09000 * 109.46897 * 29.99925 * 4 3 2 30 30 H 1.09001 * 109.46862 * 149.99975 * 4 3 2 31 31 H 1.08002 * 120.00592 * 186.24852 * 5 3 2 32 32 H 1.09000 * 109.46941 * 6.12491 * 6 5 3 33 33 H 1.09006 * 109.47097 * 246.12549 * 6 5 3 34 34 H 1.08998 * 109.58620 * 113.84465 * 10 9 7 35 35 H 1.09003 * 109.58132 * 353.42576 * 10 9 7 36 36 H 1.08996 * 109.50376 * 65.31264 * 11 10 9 37 37 H 1.08997 * 109.49555 * 185.38525 * 11 10 9 38 38 H 1.09004 * 109.46084 * 181.38748 * 12 11 10 39 39 H 1.08995 * 109.45960 * 301.36186 * 12 11 10 40 40 H 0.96991 * 120.00113 * 25.00407 * 15 13 12 41 41 H 0.96995 * 120.00463 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58439 * 6.57681 * 24 9 7 43 43 H 1.08994 * 109.58130 * 246.15071 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2766 -0.1102 6 6 4.1249 -0.0110 -0.3762 7 6 5.0037 0.1543 -1.5893 8 8 5.0290 1.2132 -2.1799 9 7 5.7606 -0.8750 -2.0183 10 6 5.7402 -2.1641 -1.3136 11 6 7.1780 -2.5535 -0.9562 12 6 8.0350 -2.5439 -2.2242 13 6 8.0504 -1.1346 -2.8208 14 1 8.4459 -0.4329 -2.0864 15 7 8.8964 -1.1193 -4.0168 16 6 9.4809 0.0492 -4.4269 17 1 9.3187 0.9593 -3.8685 18 6 10.2821 0.0639 -5.5605 19 7 10.4803 -1.0453 -6.2407 20 14 11.0801 1.6576 -6.1195 21 1 12.4128 1.7953 -5.4790 22 1 11.2399 1.6399 -7.5958 23 1 10.2220 2.8047 -5.7284 24 6 6.6228 -0.7289 -3.1991 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8686 -0.9353 0.0004 28 1 1.0504 2.9392 -0.8679 29 1 0.4092 2.4195 0.7090 30 1 1.9473 3.3115 0.6239 31 1 3.9370 2.2015 -0.0091 32 1 3.4060 -0.8106 -0.5545 33 1 4.7411 -0.2622 0.4872 34 1 5.3048 -2.9266 -1.9593 35 1 5.1490 -2.0729 -0.4024 36 1 7.5812 -1.8384 -0.2393 37 1 7.1864 -3.5517 -0.5185 38 1 9.0531 -2.8446 -1.9767 39 1 7.6168 -3.2409 -2.9504 40 1 9.0423 -1.9366 -4.5182 41 1 11.0404 -1.0351 -7.0325 42 1 6.6140 0.3090 -3.5317 43 1 6.2595 -1.3743 -3.9987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209050975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:18 Heat of formation + Delta-G solvation = 4.011550 kcal Electronic energy + Delta-G solvation = -21582.818024 eV Core-core repulsion = 18435.780820 eV Total energy + Delta-G solvation = -3147.037204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97818 -37.63609 -36.75473 -34.47072 -32.43234 -32.00858 -31.15088 -30.12281 -28.24632 -26.09919 -24.44825 -23.85495 -22.01865 -21.87558 -20.24286 -18.79111 -17.68994 -17.09770 -17.05466 -15.86537 -15.74825 -15.23133 -14.55668 -14.42939 -14.14759 -13.78243 -13.69131 -13.45983 -13.17958 -12.93803 -12.70350 -12.51747 -12.39369 -12.31765 -12.01125 -11.66721 -11.35631 -11.02902 -10.83882 -10.80294 -10.64803 -10.61637 -10.56567 -10.19456 -9.81914 -9.74095 -9.51411 -9.05925 -8.37066 -8.30072 -6.99082 -5.78056 -3.07767 1.19021 2.82400 2.86483 3.33180 3.45683 3.50955 3.53670 4.50096 4.58889 4.67522 4.70551 4.84658 4.96850 5.06965 5.17834 5.25770 5.30684 5.36134 5.46350 5.49555 5.51044 5.55928 5.59368 5.66653 5.79561 5.86965 5.93809 6.04361 6.16836 6.20905 6.22112 6.25374 6.35627 6.50341 6.57075 6.75849 6.78441 6.84689 7.02795 7.70522 7.72548 8.39623 8.45369 9.52017 10.06065 10.41384 11.44285 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003684 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.694600 B = 7599.618493 C = 8495.617790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.113 4.113 5 C -0.111 4.111 6 C -0.119 4.119 7 C 0.513 3.487 8 O -0.539 6.539 9 N -0.608 5.608 10 C 0.107 3.893 11 C -0.130 4.130 12 C -0.126 4.126 13 C 0.169 3.831 14 H 0.050 0.950 15 N -0.719 5.719 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.011 4.011 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.092 3.908 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.061 0.939 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.090 0.910 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.090 -2.850 15.955 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.139 4.139 3 C -0.118 4.118 4 C -0.170 4.170 5 C -0.129 4.129 6 C -0.158 4.158 7 C 0.300 3.700 8 O -0.416 6.416 9 N -0.343 5.343 10 C -0.017 4.017 11 C -0.169 4.169 12 C -0.165 4.165 13 C 0.057 3.943 14 H 0.068 0.932 15 N -0.359 5.359 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.032 4.032 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.981 -2.105 15.574 23.138 hybrid contribution 0.562 0.410 -0.620 0.932 sum -16.419 -1.695 14.954 22.273 Atomic orbital electron populations 1.24398 0.95734 1.01953 1.00388 1.21971 0.95343 0.96349 1.00263 1.20533 0.93836 0.94323 1.03085 1.20765 0.99887 0.94205 1.02131 1.22868 0.94039 0.97977 0.98018 1.20884 0.99049 0.98364 0.97496 1.20455 0.80274 0.83732 0.85532 1.90705 1.66115 1.26778 1.58033 1.48307 1.43594 1.11904 1.30446 1.21736 0.97746 0.85535 0.96648 1.21884 0.94880 1.01452 0.98685 1.21825 0.99889 0.98583 0.96162 1.20485 0.89280 0.94200 0.90302 0.93190 1.42377 1.55203 1.09975 1.28367 1.19276 1.22545 0.88324 1.07170 0.91058 1.24744 1.00748 0.97155 0.98052 1.69655 1.42866 1.25721 1.19842 0.86189 0.79355 0.83016 0.77693 1.21676 1.21725 1.20580 1.22752 0.91183 1.03722 0.85558 0.88243 0.88146 0.86591 0.91319 0.91933 0.91649 0.86190 0.88282 0.88097 0.91452 0.90339 0.91585 0.91018 0.91423 0.92053 0.78086 0.93467 0.89183 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.49 14.07 28.88 0.41 -1.09 16 2 C -0.12 -1.12 9.20 -37.83 -0.35 -1.46 16 3 C -0.12 -1.23 5.98 -102.87 -0.61 -1.85 16 4 C -0.11 -1.01 9.38 36.01 0.34 -0.67 16 5 C -0.11 -1.29 8.43 -36.16 -0.30 -1.60 16 6 C -0.12 -1.30 4.27 -29.03 -0.12 -1.43 16 7 C 0.51 8.13 7.69 -10.99 -0.08 8.05 16 8 O -0.54 -11.02 15.45 5.56 0.09 -10.94 16 9 N -0.61 -9.31 2.97 -172.80 -0.51 -9.82 16 10 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 11 C -0.13 -1.50 6.08 -26.61 -0.16 -1.66 16 12 C -0.13 -1.96 5.35 -26.69 -0.14 -2.11 16 13 C 0.17 3.36 2.92 -67.83 -0.20 3.17 16 14 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 15 N -0.72 -18.01 5.12 -53.32 -0.27 -18.28 16 16 C -0.24 -6.82 9.93 -15.06 -0.15 -6.97 16 17 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 20 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 C 0.09 1.78 6.01 -3.73 -0.02 1.75 16 25 H 0.10 0.64 8.06 -52.49 -0.42 0.22 16 26 H 0.10 0.74 6.31 -52.49 -0.33 0.41 16 27 H 0.12 0.92 6.00 -52.49 -0.31 0.61 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.46 6.67 -51.93 -0.35 0.12 16 30 H 0.06 0.55 8.06 -51.93 -0.42 0.13 16 31 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 32 H 0.10 0.90 5.21 -51.93 -0.27 0.63 16 33 H 0.10 0.89 7.69 -51.93 -0.40 0.49 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.63 5.93 -51.93 -0.31 0.32 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.39 10.12 7.80 -40.82 -0.32 9.80 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 2.05 7.00 -51.93 -0.36 1.68 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -32.99 346.63 -8.14 -41.13 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -6.84 Total: 7.49 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.53 Total: -5.14 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: -0.06 Total: -55.60 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.99 -8.14 -41.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209050975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.146 kcal (2) G-P(sol) polarization free energy of solvation -32.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds