Wall clock time and date at job start Tue Mar 31 2020 01:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32873 * 1 3 3 C 1.47111 * 120.00151 * 2 1 4 4 C 1.50705 * 120.00149 * 5.48983 * 3 2 1 5 5 C 1.32867 * 120.00140 * 185.49573 * 3 2 1 6 6 C 1.50706 * 119.99809 * 6.24760 * 5 3 2 7 7 C 1.50699 * 109.47270 * 126.13000 * 6 5 3 8 8 O 1.21281 * 119.99882 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99901 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.63429 * 359.97438 * 9 7 6 11 11 C 1.53185 * 108.77691 * 233.63670 * 10 9 7 12 12 C 1.53043 * 109.31224 * 305.36120 * 11 10 9 13 13 C 1.53045 * 109.53413 * 61.36878 * 12 11 10 14 14 H 1.09001 * 109.49698 * 58.62024 * 13 12 11 15 15 N 1.46510 * 109.49285 * 178.68199 * 13 12 11 16 16 C 1.36936 * 119.99390 * 204.99894 * 15 13 12 17 17 H 1.08000 * 120.00625 * 0.02562 * 16 15 13 18 18 C 1.38819 * 119.99488 * 180.02562 * 16 15 13 19 19 N 1.31612 * 120.00163 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47340 * 90.00155 * 20 18 16 22 22 H 1.48504 * 109.46873 * 210.00247 * 20 18 16 23 23 H 1.48502 * 109.47350 * 329.99348 * 20 18 16 24 24 C 1.46934 * 120.62844 * 180.02562 * 9 7 6 25 25 H 1.07997 * 120.00101 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99895 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99388 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47222 * 270.00470 * 4 3 2 29 29 H 1.09000 * 109.46897 * 29.99925 * 4 3 2 30 30 H 1.09001 * 109.46862 * 149.99975 * 4 3 2 31 31 H 1.08002 * 120.00592 * 186.24852 * 5 3 2 32 32 H 1.09000 * 109.46941 * 6.12491 * 6 5 3 33 33 H 1.09006 * 109.47097 * 246.12549 * 6 5 3 34 34 H 1.08998 * 109.58620 * 113.84465 * 10 9 7 35 35 H 1.09003 * 109.58132 * 353.42576 * 10 9 7 36 36 H 1.08996 * 109.50376 * 65.31264 * 11 10 9 37 37 H 1.08997 * 109.49555 * 185.38525 * 11 10 9 38 38 H 1.09004 * 109.46084 * 181.38748 * 12 11 10 39 39 H 1.08995 * 109.45960 * 301.36186 * 12 11 10 40 40 H 0.96991 * 120.00113 * 25.00407 * 15 13 12 41 41 H 0.96995 * 120.00463 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.58439 * 6.57681 * 24 9 7 43 43 H 1.08994 * 109.58130 * 246.15071 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3287 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3160 2.5762 0.1249 5 6 3.3884 1.2766 -0.1102 6 6 4.1249 -0.0110 -0.3762 7 6 5.0037 0.1543 -1.5893 8 8 5.0290 1.2132 -2.1799 9 7 5.7606 -0.8750 -2.0183 10 6 5.7402 -2.1641 -1.3136 11 6 7.1780 -2.5535 -0.9562 12 6 8.0350 -2.5439 -2.2242 13 6 8.0504 -1.1346 -2.8208 14 1 8.4459 -0.4329 -2.0864 15 7 8.8964 -1.1193 -4.0168 16 6 9.4809 0.0492 -4.4269 17 1 9.3187 0.9593 -3.8685 18 6 10.2821 0.0639 -5.5605 19 7 10.4803 -1.0453 -6.2407 20 14 11.0801 1.6576 -6.1195 21 1 12.4128 1.7953 -5.4790 22 1 11.2399 1.6399 -7.5958 23 1 10.2220 2.8047 -5.7284 24 6 6.6228 -0.7289 -3.1991 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8686 -0.9353 0.0004 28 1 1.0504 2.9392 -0.8679 29 1 0.4092 2.4195 0.7090 30 1 1.9473 3.3115 0.6239 31 1 3.9370 2.2015 -0.0091 32 1 3.4060 -0.8106 -0.5545 33 1 4.7411 -0.2622 0.4872 34 1 5.3048 -2.9266 -1.9593 35 1 5.1490 -2.0729 -0.4024 36 1 7.5812 -1.8384 -0.2393 37 1 7.1864 -3.5517 -0.5185 38 1 9.0531 -2.8446 -1.9767 39 1 7.6168 -3.2409 -2.9504 40 1 9.0423 -1.9366 -4.5182 41 1 11.0404 -1.0351 -7.0325 42 1 6.6140 0.3090 -3.5317 43 1 6.2595 -1.3743 -3.9987 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209050975.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:00:17 Heat of formation + Delta-G solvation = -16.892023 kcal Electronic energy + Delta-G solvation = -21583.724471 eV Core-core repulsion = 18435.780820 eV Total energy + Delta-G solvation = -3147.943651 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.22305 -38.86344 -37.70809 -36.21524 -33.99116 -32.90681 -32.68438 -31.01534 -29.83801 -27.17094 -25.89000 -25.41458 -23.24651 -22.74425 -21.66646 -20.02373 -19.13921 -18.44726 -18.21306 -16.91837 -16.89089 -16.69036 -16.05521 -15.61184 -15.43752 -15.25643 -15.11612 -14.68598 -14.29094 -14.01275 -13.94849 -13.65666 -13.43802 -13.27038 -13.06601 -12.94755 -12.88743 -12.51051 -12.42963 -12.23849 -12.00220 -11.88594 -11.66870 -11.50741 -11.34156 -11.30880 -11.12402 -10.79557 -9.72398 -9.12950 -9.01168 -8.00906 -5.30078 0.45285 1.42420 1.43924 1.52970 1.65670 1.97338 2.27294 2.52032 3.32197 3.64496 3.72455 3.80151 4.00574 4.03347 4.08400 4.14352 4.29701 4.34598 4.39182 4.44420 4.55091 4.62909 4.68386 4.74411 4.79597 4.81685 4.88907 4.93352 4.95929 5.07081 5.14666 5.15907 5.38697 5.42183 5.47892 5.51495 5.58572 5.60774 5.83498 6.05864 6.22170 6.51869 7.22737 7.28515 8.01131 8.26303 9.21834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022581 B = 0.003684 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.694600 B = 7599.618493 C = 8495.617790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.146 4.146 3 C -0.109 4.109 4 C -0.118 4.118 5 C -0.144 4.144 6 C -0.101 4.101 7 C 0.503 3.497 8 O -0.598 6.598 9 N -0.607 5.607 10 C 0.100 3.900 11 C -0.122 4.122 12 C -0.119 4.119 13 C 0.167 3.833 14 H 0.030 0.970 15 N -0.731 5.731 16 C -0.246 4.246 17 H 0.064 0.936 18 C -0.068 4.068 19 N -0.964 5.964 20 Si 0.968 3.032 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.107 3.893 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.064 0.936 37 H 0.112 0.888 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.377 0.623 41 H 0.253 0.747 42 H 0.043 0.957 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.067 -4.427 18.208 26.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.109 4.109 4 C -0.175 4.175 5 C -0.163 4.163 6 C -0.140 4.140 7 C 0.294 3.706 8 O -0.479 6.479 9 N -0.340 5.340 10 C -0.021 4.021 11 C -0.160 4.160 12 C -0.157 4.157 13 C 0.057 3.943 14 H 0.048 0.952 15 N -0.371 5.371 16 C -0.378 4.378 17 H 0.082 0.918 18 C -0.261 4.261 19 N -0.614 5.614 20 Si 0.797 3.203 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.019 4.019 25 H 0.137 0.863 26 H 0.122 0.878 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.102 0.898 35 H 0.140 0.860 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.210 0.790 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.988 -3.709 17.893 26.352 hybrid contribution 1.034 0.913 -1.269 1.874 sum -17.954 -2.797 16.624 24.628 Atomic orbital electron populations 1.24675 0.95471 1.03124 0.97616 1.22108 0.95933 0.96130 1.02214 1.20832 0.93607 0.95626 1.00800 1.20843 1.00606 0.93841 1.02208 1.22801 0.94681 0.97818 1.00991 1.20860 0.98743 0.98854 0.95521 1.21473 0.80140 0.82683 0.86353 1.90677 1.67964 1.29167 1.60066 1.48373 1.42476 1.13841 1.29329 1.22156 0.98228 0.83386 0.98334 1.21884 0.94053 1.03861 0.96214 1.21747 1.00785 0.94977 0.98206 1.20658 0.88478 0.96978 0.88140 0.95173 1.42522 1.56100 1.08638 1.29794 1.19510 1.22132 0.89158 1.07008 0.91845 1.25488 1.01912 1.00194 0.98462 1.69783 1.43896 1.27430 1.20272 0.85224 0.78527 0.79495 0.77043 1.20892 1.21627 1.20346 1.22150 0.91782 1.00602 0.87393 0.86329 0.87819 0.85040 0.91751 0.90129 0.91603 0.88257 0.85496 0.85209 0.89802 0.85970 0.91689 0.86970 0.92148 0.91586 0.79023 0.93770 0.93807 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 14.07 66.64 0.94 -1.19 16 2 C -0.15 -2.22 9.20 23.42 0.22 -2.00 16 3 C -0.11 -2.11 5.98 -18.71 -0.11 -2.22 16 4 C -0.12 -1.99 9.38 71.24 0.67 -1.32 16 5 C -0.14 -3.27 8.43 24.51 0.21 -3.06 16 6 C -0.10 -1.97 4.27 29.10 0.12 -1.84 16 7 C 0.50 15.79 7.69 87.66 0.67 16.46 16 8 O -0.60 -25.61 15.45 -3.03 -0.05 -25.66 16 9 N -0.61 -17.99 2.97 -819.00 -2.43 -20.43 16 10 C 0.10 1.80 6.34 86.36 0.55 2.35 16 11 C -0.12 -2.36 6.08 30.67 0.19 -2.18 16 12 C -0.12 -3.55 5.35 30.62 0.16 -3.39 16 13 C 0.17 6.84 2.92 45.05 0.13 6.97 16 14 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 15 N -0.73 -37.96 5.12 -322.61 -1.65 -39.61 16 16 C -0.25 -14.38 9.93 84.04 0.83 -13.55 16 17 H 0.06 3.72 7.83 -2.91 -0.02 3.70 16 18 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 19 N -0.96 -59.69 13.06 21.65 0.28 -59.41 16 20 Si 0.97 48.10 29.55 68.60 2.03 50.12 16 21 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.11 4.25 6.01 86.35 0.52 4.77 16 25 H 0.12 1.03 8.06 -2.91 -0.02 1.00 16 26 H 0.10 1.19 6.31 -2.91 -0.02 1.17 16 27 H 0.13 1.52 6.00 -2.91 -0.02 1.50 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.08 1.03 6.67 -2.39 -0.02 1.01 16 30 H 0.07 1.08 8.06 -2.39 -0.02 1.06 16 31 H 0.10 2.59 8.04 -2.91 -0.02 2.57 16 32 H 0.13 1.76 5.21 -2.39 -0.01 1.75 16 33 H 0.13 1.76 7.69 -2.38 -0.02 1.75 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.12 1.22 5.93 -2.39 -0.01 1.21 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.89 8.14 -2.38 -0.02 1.88 16 39 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.38 20.50 7.80 -92.72 -0.72 19.78 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.04 2.13 7.00 -2.39 -0.02 2.12 16 43 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -76.61 346.63 4.01 -72.60 By element: Atomic # 1 Polarization: 25.86 SS G_CDS: 0.27 Total: 26.13 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.57 Total: -3.75 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -3.81 Total: -119.45 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.66 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.12 kcal Total: -76.61 4.01 -72.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209050975.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.708 kcal (2) G-P(sol) polarization free energy of solvation -76.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds