Wall clock time and date at job start Tue Mar 31 2020 00:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47207 * 179.97438 * 122.99861 * 3 2 1 5 5 C 1.53007 * 109.46848 * 205.05332 * 4 3 2 6 6 C 1.52992 * 109.47013 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47150 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00130 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99750 * 179.97438 * 7 6 5 10 10 C 1.46919 * 120.63395 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.29715 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 14 14 H 1.08994 * 109.50232 * 301.42239 * 13 12 11 15 15 N 1.46504 * 109.49920 * 181.32179 * 13 12 11 16 16 C 1.36937 * 119.99539 * 85.16230 * 15 13 12 17 17 H 1.08007 * 120.00317 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00107 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99819 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00343 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46956 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47067 * 119.99965 * 20 18 16 23 23 H 1.48496 * 109.47312 * 240.00416 * 20 18 16 24 24 C 1.46933 * 120.62602 * 179.97438 * 9 7 6 25 25 H 1.09002 * 109.46941 * 211.94616 * 1 2 3 26 26 H 1.08995 * 109.47360 * 331.94382 * 1 2 3 27 27 H 1.09000 * 109.47025 * 91.94984 * 1 2 3 28 28 H 1.09000 * 109.46683 * 85.06049 * 4 3 2 29 29 H 1.08992 * 109.47186 * 325.05457 * 4 3 2 30 30 H 1.09003 * 109.46787 * 60.00083 * 5 4 3 31 31 H 1.09001 * 109.47108 * 300.00587 * 5 4 3 32 32 H 1.09003 * 109.47495 * 60.00249 * 6 5 4 33 33 H 1.09001 * 109.47444 * 300.00113 * 6 5 4 34 34 H 1.09002 * 109.58751 * 246.15665 * 10 9 7 35 35 H 1.08996 * 109.58750 * 6.43850 * 10 9 7 36 36 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 37 37 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 38 38 H 1.08999 * 109.41979 * 178.67448 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 40 40 H 0.96994 * 120.00489 * 265.15959 * 15 13 12 41 41 H 0.96997 * 120.00586 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.58580 * 353.42544 * 24 9 7 43 43 H 1.09006 * 109.57831 * 113.70037 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0015 -0.0006 5 6 4.6273 1.3088 0.6101 6 6 6.1572 1.3101 0.6090 7 6 6.6589 2.5973 1.2110 8 8 5.8703 3.4317 1.6021 9 7 7.9839 2.8213 1.3149 10 6 8.9514 1.8204 0.8452 11 6 9.9229 2.4899 -0.1319 12 6 10.5562 3.7110 0.5459 13 6 9.4644 4.7188 0.9124 14 1 8.9272 5.0168 0.0121 15 7 10.0752 5.8980 1.5311 16 6 10.5579 6.9106 0.7457 17 1 10.4881 6.8400 -0.3298 18 6 11.1362 8.0282 1.3318 19 7 11.2208 8.1144 2.6425 20 14 11.7941 9.4098 0.2606 21 1 11.5791 9.0724 -1.1696 22 1 11.0790 10.6704 0.5841 23 1 13.2465 9.5850 0.5154 24 6 8.4881 4.0717 1.8991 25 1 -0.3633 -0.8720 0.5438 26 1 -0.3634 0.9068 0.4833 27 1 -0.3633 -0.0350 -1.0271 28 1 4.4810 -0.0867 -1.0246 29 1 4.4822 -0.8405 0.5879 30 1 4.2643 1.3970 1.6341 31 1 4.2631 2.1509 0.0217 32 1 6.5200 1.2220 -0.4151 33 1 6.5218 0.4680 1.1972 34 1 9.5051 1.4206 1.6947 35 1 8.4240 1.0116 0.3395 36 1 10.7017 1.7813 -0.4136 37 1 9.3812 2.8088 -1.0224 38 1 11.2661 4.1772 -0.1374 39 1 11.0766 3.3946 1.4499 40 1 10.1375 5.9616 2.4970 41 1 11.6252 8.8951 3.0521 42 1 7.6553 4.7493 2.0866 43 1 9.0018 3.8560 2.8361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209112909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:16 Heat of formation + Delta-G solvation = 2.046171 kcal Electronic energy + Delta-G solvation = -21017.535996 eV Core-core repulsion = 17870.413566 eV Total energy + Delta-G solvation = -3147.122429 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.03620 -37.45515 -35.81577 -34.49105 -33.46069 -32.17374 -31.26558 -29.95317 -28.32872 -26.76241 -24.97086 -23.82396 -22.14221 -22.04822 -19.99313 -18.78419 -17.27061 -17.18855 -16.52976 -16.07754 -15.43436 -14.99290 -14.52732 -14.09531 -14.06048 -14.04123 -13.85658 -13.68851 -13.50424 -13.15028 -12.95960 -12.86278 -12.60214 -12.24138 -12.12886 -11.70408 -11.08247 -11.05711 -10.93668 -10.91616 -10.64623 -10.41048 -10.34353 -10.05243 -9.96439 -9.88445 -9.74583 -9.53951 -8.92090 -8.38175 -6.99073 -5.78102 -3.07672 2.49915 2.53970 2.78311 3.15604 3.42938 3.48688 3.50775 4.02540 4.51434 4.58225 4.80355 4.82484 4.93698 5.14152 5.15638 5.20128 5.28699 5.31613 5.34910 5.36906 5.41091 5.44228 5.52743 5.57749 5.68440 5.75129 5.78630 5.82484 5.95822 6.04405 6.13936 6.16705 6.25011 6.39053 6.55159 6.71792 6.88346 7.04632 7.47774 7.60901 7.69395 8.34618 8.40289 9.51084 10.06559 10.41604 11.44470 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.002874 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.015613 B = 9741.809800 C =10281.854776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.006 4.006 5 C -0.100 4.100 6 C -0.139 4.139 7 C 0.510 3.490 8 O -0.543 6.543 9 N -0.607 5.607 10 C 0.107 3.893 11 C -0.134 4.134 12 C -0.137 4.137 13 C 0.168 3.832 14 H 0.049 0.951 15 N -0.722 5.722 16 C -0.238 4.238 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.106 3.894 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.092 0.908 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.014 -20.711 -5.493 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.200 4.200 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.138 4.138 6 C -0.179 4.179 7 C 0.298 3.702 8 O -0.420 6.420 9 N -0.341 5.341 10 C -0.016 4.016 11 C -0.173 4.173 12 C -0.178 4.178 13 C 0.058 3.942 14 H 0.067 0.933 15 N -0.362 5.362 16 C -0.369 4.369 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.580 5.580 20 Si 0.739 3.261 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.017 4.017 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.110 0.890 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.389 -20.115 -5.406 24.235 hybrid contribution 0.659 0.784 -0.245 1.053 sum -11.730 -19.331 -5.651 23.307 Atomic orbital electron populations 1.18835 0.84789 1.02993 1.02877 1.22418 0.93992 1.01603 1.01966 1.22342 0.93677 1.01209 1.01081 1.18715 0.84449 0.98884 1.02248 1.21296 0.93099 0.96688 1.02705 1.21694 0.97137 0.96408 1.02638 1.20610 0.81911 0.88731 0.78933 1.90709 1.54733 1.47175 1.49373 1.48150 1.05294 1.19376 1.61236 1.21763 0.91212 0.90591 0.97994 1.21994 0.98354 0.98547 0.98392 1.22337 0.99992 0.95149 1.00317 1.20461 0.91376 0.87556 0.94856 0.93258 1.42322 1.70545 1.17061 1.06315 1.19252 1.31117 0.96201 0.90317 0.91112 1.24759 1.01870 0.98593 0.95718 1.69670 1.50158 1.30105 1.08042 0.86110 0.78294 0.82362 0.79380 1.20559 1.21820 1.21870 1.21977 0.98809 0.84674 0.96264 0.90380 0.90175 0.90353 0.89575 0.89619 0.90780 0.90714 0.88729 0.88857 0.91423 0.90219 0.91318 0.91871 0.91599 0.92490 0.78197 0.93507 0.88995 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.26 10.32 34.37 0.35 0.09 16 2 C -0.20 -2.11 14.13 -37.12 -0.52 -2.63 16 3 C -0.18 -1.99 13.34 -37.12 -0.50 -2.49 16 4 C -0.01 -0.05 5.70 -29.51 -0.17 -0.22 16 5 C -0.10 -1.03 4.46 -26.73 -0.12 -1.15 16 6 C -0.14 -1.32 4.05 -27.89 -0.11 -1.43 16 7 C 0.51 7.50 7.70 -10.98 -0.08 7.41 16 8 O -0.54 -10.37 15.40 5.56 0.09 -10.28 16 9 N -0.61 -8.79 2.97 -172.79 -0.51 -9.30 16 10 C 0.11 1.16 6.33 -3.71 -0.02 1.14 16 11 C -0.13 -1.64 6.11 -26.45 -0.16 -1.80 16 12 C -0.14 -2.32 5.47 -26.53 -0.15 -2.46 16 13 C 0.17 3.37 2.92 -67.83 -0.20 3.17 16 14 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 15 N -0.72 -18.11 5.12 -53.33 -0.27 -18.38 16 16 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 17 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.22 13.06 55.49 0.72 -27.50 16 20 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 C 0.11 1.90 5.90 -3.73 -0.02 1.87 16 25 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.07 0.91 8.10 -51.93 -0.42 0.48 16 32 H 0.09 0.71 7.70 -51.93 -0.40 0.31 16 33 H 0.09 0.66 7.94 -51.93 -0.41 0.25 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.61 5.93 -51.93 -0.31 0.30 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.38 10.22 7.80 -40.82 -0.32 9.90 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 1.89 7.00 -51.93 -0.36 1.52 16 43 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 355.65 15.07 5.36 5.36 Total: -1.00 -33.80 355.65 -8.85 -42.65 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.26 Total: 5.70 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.95 Total: -5.73 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.06 Total: -55.18 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.80 -8.85 -42.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209112909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.695 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds