Wall clock time and date at job start Tue Mar 31 2020 00:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17395 * 179.97438 * 2 1 4 4 C 1.47207 * 179.97438 * 122.99861 * 3 2 1 5 5 C 1.53007 * 109.46848 * 205.05332 * 4 3 2 6 6 C 1.52992 * 109.47013 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47150 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00130 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99750 * 179.97438 * 7 6 5 10 10 C 1.46919 * 120.63395 * 0.02562 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.29715 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 14 14 H 1.08994 * 109.50232 * 301.42239 * 13 12 11 15 15 N 1.46504 * 109.49920 * 181.32179 * 13 12 11 16 16 C 1.36937 * 119.99539 * 85.16230 * 15 13 12 17 17 H 1.08007 * 120.00317 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00107 * 179.97438 * 16 15 13 19 19 N 1.31620 * 119.99819 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00343 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46956 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47067 * 119.99965 * 20 18 16 23 23 H 1.48496 * 109.47312 * 240.00416 * 20 18 16 24 24 C 1.46933 * 120.62602 * 179.97438 * 9 7 6 25 25 H 1.09002 * 109.46941 * 211.94616 * 1 2 3 26 26 H 1.08995 * 109.47360 * 331.94382 * 1 2 3 27 27 H 1.09000 * 109.47025 * 91.94984 * 1 2 3 28 28 H 1.09000 * 109.46683 * 85.06049 * 4 3 2 29 29 H 1.08992 * 109.47186 * 325.05457 * 4 3 2 30 30 H 1.09003 * 109.46787 * 60.00083 * 5 4 3 31 31 H 1.09001 * 109.47108 * 300.00587 * 5 4 3 32 32 H 1.09003 * 109.47495 * 60.00249 * 6 5 4 33 33 H 1.09001 * 109.47444 * 300.00113 * 6 5 4 34 34 H 1.09002 * 109.58751 * 246.15665 * 10 9 7 35 35 H 1.08996 * 109.58750 * 6.43850 * 10 9 7 36 36 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 37 37 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 38 38 H 1.08999 * 109.41979 * 178.67448 * 12 11 10 39 39 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 40 40 H 0.96994 * 120.00489 * 265.15959 * 15 13 12 41 41 H 0.96997 * 120.00586 * 179.97438 * 19 18 16 42 42 H 1.08994 * 109.58580 * 353.42544 * 24 9 7 43 43 H 1.09006 * 109.57831 * 113.70037 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0015 -0.0006 5 6 4.6273 1.3088 0.6101 6 6 6.1572 1.3101 0.6090 7 6 6.6589 2.5973 1.2110 8 8 5.8703 3.4317 1.6021 9 7 7.9839 2.8213 1.3149 10 6 8.9514 1.8204 0.8452 11 6 9.9229 2.4899 -0.1319 12 6 10.5562 3.7110 0.5459 13 6 9.4644 4.7188 0.9124 14 1 8.9272 5.0168 0.0121 15 7 10.0752 5.8980 1.5311 16 6 10.5579 6.9106 0.7457 17 1 10.4881 6.8400 -0.3298 18 6 11.1362 8.0282 1.3318 19 7 11.2208 8.1144 2.6425 20 14 11.7941 9.4098 0.2606 21 1 11.5791 9.0724 -1.1696 22 1 11.0790 10.6704 0.5841 23 1 13.2465 9.5850 0.5154 24 6 8.4881 4.0717 1.8991 25 1 -0.3633 -0.8720 0.5438 26 1 -0.3634 0.9068 0.4833 27 1 -0.3633 -0.0350 -1.0271 28 1 4.4810 -0.0867 -1.0246 29 1 4.4822 -0.8405 0.5879 30 1 4.2643 1.3970 1.6341 31 1 4.2631 2.1509 0.0217 32 1 6.5200 1.2220 -0.4151 33 1 6.5218 0.4680 1.1972 34 1 9.5051 1.4206 1.6947 35 1 8.4240 1.0116 0.3395 36 1 10.7017 1.7813 -0.4136 37 1 9.3812 2.8088 -1.0224 38 1 11.2661 4.1772 -0.1374 39 1 11.0766 3.3946 1.4499 40 1 10.1375 5.9616 2.4970 41 1 11.6252 8.8951 3.0521 42 1 7.6553 4.7493 2.0866 43 1 9.0018 3.8560 2.8361 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209112909.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:33:15 Heat of formation + Delta-G solvation = -19.188111 kcal Electronic energy + Delta-G solvation = -21018.456783 eV Core-core repulsion = 17870.413566 eV Total energy + Delta-G solvation = -3148.043217 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22527 -38.78809 -36.60161 -36.20326 -34.27248 -33.75226 -32.72602 -30.93219 -29.77339 -27.60900 -26.22096 -25.60726 -23.38282 -23.05933 -21.37880 -19.99588 -19.15163 -18.29832 -17.41680 -17.02174 -16.69064 -16.53822 -15.84748 -15.51895 -15.24640 -15.13112 -14.81286 -14.63024 -14.55769 -14.42348 -14.11041 -13.92384 -13.64651 -13.28073 -13.14029 -12.94951 -12.87776 -12.52960 -12.30353 -12.15055 -12.05867 -11.84159 -11.83040 -11.71180 -11.59486 -10.93860 -10.82864 -10.62305 -10.55321 -9.64643 -9.04838 -7.97922 -5.27580 1.44376 1.46054 1.55664 1.66197 1.72055 1.79908 2.04107 2.54427 3.34998 3.38793 3.58949 3.80987 4.01701 4.05575 4.10413 4.13110 4.18420 4.31568 4.37583 4.49509 4.60948 4.66640 4.71701 4.76152 4.80548 4.81974 4.84810 4.86432 4.88274 4.93665 5.09584 5.15579 5.19773 5.22365 5.34719 5.41626 5.43565 5.54504 5.60537 6.24006 6.50320 6.74894 7.21793 7.29488 8.02686 8.26800 9.25656 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026813 B = 0.002874 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.015613 B = 9741.809800 C =10281.854776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.222 4.222 3 C -0.214 4.214 4 C 0.000 4.000 5 C -0.095 4.095 6 C -0.125 4.125 7 C 0.500 3.500 8 O -0.600 6.600 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.125 4.125 12 C -0.129 4.129 13 C 0.167 3.833 14 H 0.030 0.970 15 N -0.737 5.737 16 C -0.238 4.238 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.969 5.969 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.295 1.295 23 H -0.290 1.290 24 C 0.118 3.882 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.092 0.908 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.373 0.627 41 H 0.251 0.749 42 H 0.055 0.945 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.718 -23.887 -7.305 27.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.222 4.222 3 C -0.214 4.214 4 C -0.036 4.036 5 C -0.133 4.133 6 C -0.164 4.164 7 C 0.291 3.709 8 O -0.481 6.481 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.163 4.163 12 C -0.169 4.169 13 C 0.058 3.942 14 H 0.048 0.952 15 N -0.377 5.377 16 C -0.369 4.369 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.620 5.620 20 Si 0.803 3.197 21 H -0.191 1.191 22 H -0.222 1.222 23 H -0.217 1.217 24 C -0.007 4.007 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.147 0.853 33 H 0.151 0.849 34 H 0.101 0.899 35 H 0.146 0.854 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.205 0.795 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.091 -23.365 -7.270 27.294 hybrid contribution 0.488 1.736 0.318 1.831 sum -11.602 -21.629 -6.952 25.510 Atomic orbital electron populations 1.19044 0.82839 1.03934 1.04118 1.23422 0.95514 1.01372 1.01931 1.23174 0.95049 1.01695 1.01499 1.18801 0.82979 0.98114 1.03740 1.21186 0.94040 0.97096 1.00996 1.21756 0.95998 0.94071 1.04599 1.21696 0.81291 0.89967 0.77928 1.90691 1.56139 1.49496 1.51758 1.48265 1.06249 1.18545 1.60841 1.22138 0.90702 0.90332 0.98621 1.21963 0.99394 0.96880 0.98105 1.22134 0.98309 0.96239 1.00258 1.20631 0.92475 0.86990 0.94138 0.95237 1.42520 1.70979 1.18484 1.05714 1.19583 1.29925 0.96752 0.90688 0.90876 1.25588 1.03113 1.01211 0.96992 1.69824 1.51723 1.30715 1.09700 0.85064 0.77318 0.78950 0.78379 1.19064 1.22225 1.21692 1.21511 0.96902 0.86171 0.96093 0.88810 0.89684 0.88947 0.87366 0.87125 0.93149 0.93513 0.85349 0.84925 0.89864 0.85358 0.87776 0.91889 0.93730 0.92623 0.79548 0.93969 0.92635 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.54 10.32 70.18 0.72 0.19 16 2 C -0.22 -4.54 14.13 31.13 0.44 -4.10 16 3 C -0.21 -4.43 13.34 31.13 0.42 -4.01 16 4 C 0.00 0.00 5.70 28.79 0.16 0.16 16 5 C -0.09 -1.82 4.46 30.59 0.14 -1.69 16 6 C -0.13 -1.89 4.05 29.85 0.12 -1.77 16 7 C 0.50 14.08 7.70 87.66 0.67 14.75 16 8 O -0.60 -23.74 15.40 -3.03 -0.05 -23.79 16 9 N -0.61 -16.52 2.97 -818.98 -2.44 -18.96 16 10 C 0.10 1.75 6.33 86.36 0.55 2.30 16 11 C -0.12 -2.57 6.11 30.78 0.19 -2.38 16 12 C -0.13 -4.22 5.47 30.72 0.17 -4.05 16 13 C 0.17 6.81 2.92 45.05 0.13 6.94 16 14 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 15 N -0.74 -38.35 5.12 -322.64 -1.65 -40.00 16 16 C -0.24 -13.52 9.93 84.03 0.83 -12.69 16 17 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 19 N -0.97 -60.45 13.06 21.65 0.28 -60.16 16 20 Si 0.97 47.05 29.55 68.60 2.03 49.08 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 C 0.12 4.33 5.90 86.35 0.51 4.84 16 25 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 26 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 31 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 32 H 0.13 1.17 7.70 -2.39 -0.02 1.16 16 33 H 0.13 1.07 7.94 -2.39 -0.02 1.05 16 34 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 35 H 0.13 1.03 5.93 -2.39 -0.01 1.02 16 36 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.37 20.78 7.80 -92.71 -0.72 20.05 16 41 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 42 H 0.06 2.43 7.00 -2.39 -0.02 2.42 16 43 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -79.45 355.65 3.96 -75.49 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.26 Total: 23.89 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.52 Total: -5.55 kcal Atomic # 7 Polarization: -115.32 SS G_CDS: -3.81 Total: -119.12 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -79.45 3.96 -75.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209112909.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.306 kcal (2) G-P(sol) polarization free energy of solvation -79.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds