Wall clock time and date at job start Tue Mar 31 2020 01:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47510 * 2 1 4 4 C 1.50702 * 120.00235 * 275.00615 * 3 2 1 5 5 C 1.32997 * 119.99665 * 94.99696 * 3 2 1 6 6 C 1.47105 * 119.99743 * 183.50198 * 5 3 2 7 7 O 1.21618 * 120.00330 * 357.21164 * 6 5 3 8 8 N 1.34775 * 120.00079 * 177.21514 * 6 5 3 9 9 C 1.47806 * 135.01023 * 359.97438 * 8 6 5 10 10 C 1.54652 * 85.79473 * 153.83262 * 9 8 6 11 11 H 1.09001 * 114.44477 * 139.84163 * 10 9 8 12 12 C 1.53016 * 110.83787 * 270.23778 * 10 9 8 13 13 C 1.51894 * 110.09433 * 142.98785 * 12 10 9 14 14 N 1.46619 * 108.28368 * 301.74261 * 13 12 10 15 15 C 1.36937 * 119.88684 * 236.92699 * 14 13 12 16 16 H 1.08001 * 119.99972 * 152.46599 * 15 14 13 17 17 C 1.38812 * 120.00158 * 332.47214 * 15 14 13 18 18 N 1.31620 * 120.00329 * 155.69418 * 17 15 14 19 19 Si 1.86800 * 119.99718 * 335.68707 * 17 15 14 20 20 H 1.48504 * 109.47081 * 94.77563 * 19 17 15 21 21 H 1.48501 * 109.47267 * 214.77366 * 19 17 15 22 22 H 1.48501 * 109.47269 * 334.77654 * 19 17 15 23 23 C 1.45677 * 120.21880 * 56.94558 * 14 13 12 24 24 C 1.46816 * 135.01586 * 180.02562 * 8 6 5 25 25 H 1.08995 * 111.56606 * 94.45422 * 24 8 6 26 26 H 1.08998 * 109.47708 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47093 * 299.99828 * 1 2 3 28 28 H 1.08996 * 109.47242 * 59.99879 * 1 2 3 29 29 H 1.09004 * 109.47093 * 240.00172 * 2 1 3 30 30 H 1.09005 * 109.46969 * 120.00673 * 2 1 3 31 31 H 1.09005 * 109.46446 * 239.91624 * 4 3 2 32 32 H 1.09002 * 109.46968 * 359.90926 * 4 3 2 33 33 H 1.08994 * 109.47503 * 119.91619 * 4 3 2 34 34 H 1.07997 * 120.00236 * 3.50262 * 5 3 2 35 35 H 1.09000 * 113.82723 * 39.61423 * 9 8 6 36 36 H 1.09003 * 113.82602 * 268.04761 * 9 8 6 37 37 H 1.09000 * 109.46809 * 263.88053 * 12 10 9 38 38 H 1.09003 * 109.47581 * 23.88544 * 12 10 9 39 39 H 1.08998 * 109.92955 * 181.84269 * 13 12 10 40 40 H 1.09005 * 109.34768 * 61.29532 * 13 12 10 41 41 H 0.96999 * 120.00203 * 179.97438 * 18 17 15 42 42 H 1.09008 * 108.71041 * 199.76466 * 23 14 13 43 43 H 1.08994 * 108.61672 * 81.68087 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3486 2.0141 1.1474 6 6 2.7654 3.4249 1.1554 7 8 2.8697 4.0341 0.1080 8 7 3.0317 4.0423 2.3235 9 6 3.0152 3.6405 3.7458 10 6 4.0696 4.7525 3.9543 11 1 3.9392 5.3321 4.8681 12 6 5.4852 4.2022 3.7676 13 6 6.3618 5.2378 3.0847 14 7 5.7518 5.5789 1.7959 15 6 6.4691 5.4255 0.6395 16 1 5.9571 5.2362 -0.2924 17 6 7.8542 5.5133 0.6651 18 7 8.5685 4.9209 -0.2682 19 14 8.7042 6.4723 2.0242 20 1 9.0920 5.5444 3.1168 21 1 9.9188 7.1312 1.4800 22 1 7.7778 7.5038 2.5562 23 6 4.3853 6.0809 1.7414 24 6 3.4576 5.3929 2.7106 25 1 2.6059 6.0249 2.9620 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.2161 2.4673 -1.4344 32 1 1.8734 1.5249 -2.1256 33 1 1.5435 3.0564 -1.2806 34 1 2.2995 1.4603 2.0733 35 1 3.3953 2.6345 3.9236 36 1 2.0667 3.8337 4.2470 37 1 5.9055 3.9435 4.7395 38 1 5.4493 3.3126 3.1388 39 1 7.3603 4.8313 2.9237 40 1 6.4231 6.1282 3.7105 41 1 9.5364 4.9825 -0.2505 42 1 4.0014 5.9411 0.7308 43 1 4.3972 7.1474 1.9658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221527957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:44 Heat of formation + Delta-G solvation = 41.489246 kcal Electronic energy + Delta-G solvation = -22853.242113 eV Core-core repulsion = 19707.830064 eV Total energy + Delta-G solvation = -3145.412049 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.57015 -38.31055 -35.87073 -35.42501 -31.90792 -31.14029 -30.90471 -29.49520 -27.45356 -26.81642 -24.23471 -23.64051 -23.18269 -21.23665 -20.50796 -18.40220 -17.59926 -16.95040 -16.32979 -15.59744 -15.36617 -15.08931 -14.55396 -14.34461 -13.90339 -13.65899 -13.58276 -13.26676 -12.80883 -12.75074 -12.43145 -12.42503 -12.15827 -12.01711 -11.81264 -11.55699 -11.37132 -11.33788 -11.02348 -10.92746 -10.82254 -10.62951 -10.21487 -9.91668 -9.64550 -9.38290 -8.99063 -8.86252 -8.54752 -8.12753 -6.86160 -5.85149 -3.16941 1.64517 3.21773 3.37358 3.54293 3.58648 3.74769 4.58031 4.58814 4.62255 4.81599 5.01670 5.05008 5.15199 5.16995 5.21673 5.31661 5.47753 5.48604 5.53803 5.59809 5.67828 5.72165 5.77956 5.84191 5.89320 5.97710 6.01571 6.05852 6.14455 6.24564 6.32853 6.40215 6.43174 6.63404 6.71535 6.72690 6.81417 6.89001 7.03418 8.11295 8.22144 8.47821 8.73613 9.09891 9.84938 10.19011 11.30972 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.005622 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.288606 B = 4979.660520 C = 5704.354770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.038 4.038 4 C -0.114 4.114 5 C -0.219 4.219 6 C 0.569 3.431 7 O -0.529 6.529 8 N -0.629 5.629 9 C 0.098 3.902 10 C -0.109 4.109 11 H 0.088 0.912 12 C -0.117 4.117 13 C 0.129 3.871 14 N -0.595 5.595 15 C -0.251 4.251 16 H 0.085 0.915 17 C 0.023 3.977 18 N -0.906 5.906 19 Si 0.875 3.125 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.143 3.857 24 C 0.131 3.869 25 H 0.078 0.922 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.047 0.953 33 H 0.081 0.919 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 -7.515 8.414 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.040 4.040 4 C -0.170 4.170 5 C -0.240 4.240 6 C 0.362 3.638 7 O -0.407 6.407 8 N -0.365 5.365 9 C -0.025 4.025 10 C -0.128 4.128 11 H 0.106 0.894 12 C -0.157 4.157 13 C 0.004 3.996 14 N -0.318 5.318 15 C -0.379 4.379 16 H 0.102 0.898 17 C -0.176 4.176 18 N -0.549 5.549 19 Si 0.705 3.295 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.196 1.196 23 C 0.017 3.983 24 C 0.027 3.973 25 H 0.096 0.904 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.066 0.934 33 H 0.099 0.901 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.041 0.959 41 H 0.070 0.930 42 H 0.100 0.900 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -15.250 -7.309 7.547 18.518 hybrid contribution 0.575 0.425 0.988 1.219 sum -14.675 -6.884 8.535 18.319 Atomic orbital electron populations 1.21699 0.94401 1.01720 1.02364 1.20731 0.96341 0.92974 1.03132 1.22489 0.91043 0.94941 0.95545 1.21013 1.04436 0.99133 0.92410 1.22314 1.08281 0.94925 0.98500 1.18020 0.76899 0.86959 0.81936 1.90783 1.52237 1.67512 1.30177 1.49667 1.67886 1.14125 1.04844 1.23515 0.98325 0.99669 0.80990 1.22875 0.95776 0.96605 0.97550 0.89356 1.21635 0.93481 1.00628 0.99915 1.20950 0.96481 0.94930 0.87280 1.43800 1.10151 1.75021 1.02837 1.18945 0.88894 1.42511 0.87550 0.89786 1.25233 0.96089 0.99499 0.96744 1.69905 1.05602 1.43165 1.36216 0.87021 0.78783 0.81736 0.81941 1.21811 1.23196 1.19631 1.20211 0.85001 0.94093 0.99023 1.22339 0.96107 0.85297 0.93588 0.90422 0.92298 0.92547 0.92341 0.90532 0.91010 0.89474 0.93427 0.90081 0.86535 0.90450 0.90420 0.92298 0.91410 0.90690 0.95892 0.92980 0.90040 0.96028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.89 37.16 0.37 -0.87 16 2 C -0.09 -0.95 6.02 -27.89 -0.17 -1.12 16 3 C -0.04 -0.53 5.37 -101.17 -0.54 -1.07 16 4 C -0.11 -1.72 8.34 36.01 0.30 -1.42 16 5 C -0.22 -3.29 9.43 -37.80 -0.36 -3.64 16 6 C 0.57 10.65 7.89 -12.66 -0.10 10.55 16 7 O -0.53 -11.72 12.14 5.26 0.06 -11.66 16 8 N -0.63 -10.62 3.33 -175.37 -0.58 -11.20 16 9 C 0.10 1.22 7.85 -3.01 -0.02 1.20 16 10 C -0.11 -1.57 4.42 -89.96 -0.40 -1.97 16 11 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 12 C -0.12 -2.05 5.58 -27.28 -0.15 -2.20 16 13 C 0.13 2.86 4.17 -4.54 -0.02 2.84 16 14 N -0.59 -14.83 2.77 -175.80 -0.49 -15.31 16 15 C -0.25 -7.42 9.94 -15.06 -0.15 -7.57 16 16 H 0.08 2.77 8.00 -52.49 -0.42 2.35 16 17 C 0.02 0.68 5.14 -17.43 -0.09 0.59 16 18 N -0.91 -28.77 13.97 55.49 0.78 -28.00 16 19 Si 0.87 22.80 24.50 -169.99 -4.16 18.63 16 20 H -0.29 -7.24 6.67 56.52 0.38 -6.86 16 21 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 22 H -0.27 -6.94 6.91 56.52 0.39 -6.55 16 23 C 0.14 3.10 6.14 -5.60 -0.03 3.06 16 24 C 0.13 2.22 4.26 -69.58 -0.30 1.92 16 25 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.66 8.00 -51.93 -0.42 0.25 16 31 H 0.09 1.60 7.35 -51.93 -0.38 1.22 16 32 H 0.05 0.59 8.00 -51.93 -0.42 0.17 16 33 H 0.08 1.32 7.09 -51.93 -0.37 0.95 16 34 H 0.12 1.46 7.88 -52.49 -0.41 1.05 16 35 H 0.08 0.89 7.97 -51.93 -0.41 0.48 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.32 7.69 -51.93 -0.40 0.92 16 39 H 0.08 1.84 4.43 -51.93 -0.23 1.61 16 40 H 0.02 0.49 7.47 -51.93 -0.39 0.10 16 41 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 42 H 0.08 1.98 6.26 -51.92 -0.32 1.65 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -34.32 333.55 -8.18 -42.50 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.15 Total: -0.27 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.66 Total: 0.29 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.30 Total: -54.52 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.06 Total: -11.66 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.16 Total: 18.63 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.32 -8.18 -42.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221527957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.991 kcal (2) G-P(sol) polarization free energy of solvation -34.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds