Wall clock time and date at job start Tue Mar 31 2020 01:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50692 * 109.47510 * 2 1 4 4 C 1.50702 * 120.00235 * 275.00615 * 3 2 1 5 5 C 1.32997 * 119.99665 * 94.99696 * 3 2 1 6 6 C 1.47105 * 119.99743 * 183.50198 * 5 3 2 7 7 O 1.21618 * 120.00330 * 357.21164 * 6 5 3 8 8 N 1.34775 * 120.00079 * 177.21514 * 6 5 3 9 9 C 1.47806 * 135.01023 * 359.97438 * 8 6 5 10 10 C 1.54652 * 85.79473 * 153.83262 * 9 8 6 11 11 H 1.09001 * 114.44477 * 139.84163 * 10 9 8 12 12 C 1.53016 * 110.83787 * 270.23778 * 10 9 8 13 13 C 1.51894 * 110.09433 * 142.98785 * 12 10 9 14 14 N 1.46619 * 108.28368 * 301.74261 * 13 12 10 15 15 C 1.36937 * 119.88684 * 236.92699 * 14 13 12 16 16 H 1.08001 * 119.99972 * 152.46599 * 15 14 13 17 17 C 1.38812 * 120.00158 * 332.47214 * 15 14 13 18 18 N 1.31620 * 120.00329 * 155.69418 * 17 15 14 19 19 Si 1.86800 * 119.99718 * 335.68707 * 17 15 14 20 20 H 1.48504 * 109.47081 * 94.77563 * 19 17 15 21 21 H 1.48501 * 109.47267 * 214.77366 * 19 17 15 22 22 H 1.48501 * 109.47269 * 334.77654 * 19 17 15 23 23 C 1.45677 * 120.21880 * 56.94558 * 14 13 12 24 24 C 1.46816 * 135.01586 * 180.02562 * 8 6 5 25 25 H 1.08995 * 111.56606 * 94.45422 * 24 8 6 26 26 H 1.08998 * 109.47708 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47093 * 299.99828 * 1 2 3 28 28 H 1.08996 * 109.47242 * 59.99879 * 1 2 3 29 29 H 1.09004 * 109.47093 * 240.00172 * 2 1 3 30 30 H 1.09005 * 109.46969 * 120.00673 * 2 1 3 31 31 H 1.09005 * 109.46446 * 239.91624 * 4 3 2 32 32 H 1.09002 * 109.46968 * 359.90926 * 4 3 2 33 33 H 1.08994 * 109.47503 * 119.91619 * 4 3 2 34 34 H 1.07997 * 120.00236 * 3.50262 * 5 3 2 35 35 H 1.09000 * 113.82723 * 39.61423 * 9 8 6 36 36 H 1.09003 * 113.82602 * 268.04761 * 9 8 6 37 37 H 1.09000 * 109.46809 * 263.88053 * 12 10 9 38 38 H 1.09003 * 109.47581 * 23.88544 * 12 10 9 39 39 H 1.08998 * 109.92955 * 181.84269 * 13 12 10 40 40 H 1.09005 * 109.34768 * 61.29532 * 13 12 10 41 41 H 0.96999 * 120.00203 * 179.97438 * 18 17 15 42 42 H 1.09008 * 108.71041 * 199.76466 * 23 14 13 43 43 H 1.08994 * 108.61672 * 81.68087 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1762 2.1691 -1.3001 5 6 2.3486 2.0141 1.1474 6 6 2.7654 3.4249 1.1554 7 8 2.8697 4.0341 0.1080 8 7 3.0317 4.0423 2.3235 9 6 3.0152 3.6405 3.7458 10 6 4.0696 4.7525 3.9543 11 1 3.9392 5.3321 4.8681 12 6 5.4852 4.2022 3.7676 13 6 6.3618 5.2378 3.0847 14 7 5.7518 5.5789 1.7959 15 6 6.4691 5.4255 0.6395 16 1 5.9571 5.2362 -0.2924 17 6 7.8542 5.5133 0.6651 18 7 8.5685 4.9209 -0.2682 19 14 8.7042 6.4723 2.0242 20 1 9.0920 5.5444 3.1168 21 1 9.9188 7.1312 1.4800 22 1 7.7778 7.5038 2.5562 23 6 4.3853 6.0809 1.7414 24 6 3.4576 5.3929 2.7106 25 1 2.6059 6.0249 2.9620 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5140 0.8900 31 1 3.2161 2.4673 -1.4344 32 1 1.8734 1.5249 -2.1256 33 1 1.5435 3.0564 -1.2806 34 1 2.2995 1.4603 2.0733 35 1 3.3953 2.6345 3.9236 36 1 2.0667 3.8337 4.2470 37 1 5.9055 3.9435 4.7395 38 1 5.4493 3.3126 3.1388 39 1 7.3603 4.8313 2.9237 40 1 6.4231 6.1282 3.7105 41 1 9.5364 4.9825 -0.2505 42 1 4.0014 5.9411 0.7308 43 1 4.3972 7.1474 1.9658 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221527957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:43 Heat of formation + Delta-G solvation = 17.826399 kcal Electronic energy + Delta-G solvation = -22854.268211 eV Core-core repulsion = 19707.830064 eV Total energy + Delta-G solvation = -3146.438147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88191 -39.67250 -37.35815 -36.84545 -33.97393 -32.76707 -31.94568 -30.89502 -29.04188 -28.13385 -25.50651 -25.31304 -24.44692 -22.81845 -21.81032 -19.66725 -19.14161 -18.58841 -17.80772 -17.24280 -16.95937 -16.53852 -15.74675 -15.48111 -15.43252 -15.27308 -15.05062 -14.57423 -14.38960 -14.10353 -13.96532 -13.82054 -13.57830 -13.40236 -13.05068 -12.84261 -12.74893 -12.58208 -12.52355 -12.26460 -12.24629 -12.03139 -11.76567 -11.57209 -11.39517 -11.28567 -10.72588 -10.27483 -10.17286 -9.43336 -8.90604 -8.18962 -5.48198 0.46059 1.27737 1.40361 1.51781 2.01214 2.40380 2.42609 2.99885 3.33398 3.43752 3.53698 3.84451 3.87694 4.05149 4.19553 4.29073 4.30683 4.38782 4.42840 4.53077 4.57156 4.60018 4.62241 4.71794 4.75864 4.79872 4.84366 4.87929 5.00452 5.01091 5.04740 5.07557 5.13134 5.23682 5.26546 5.35698 5.53285 5.55002 5.71304 5.87762 6.10475 6.92821 6.96756 7.37802 7.65540 7.98501 9.02094 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020870 B = 0.005622 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.288606 B = 4979.660520 C = 5704.354770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.033 4.033 4 C -0.109 4.109 5 C -0.231 4.231 6 C 0.548 3.452 7 O -0.587 6.587 8 N -0.640 5.640 9 C 0.112 3.888 10 C -0.099 4.099 11 H 0.137 0.863 12 C -0.111 4.111 13 C 0.120 3.880 14 N -0.608 5.608 15 C -0.249 4.249 16 H 0.021 0.979 17 C -0.037 4.037 18 N -0.959 5.959 19 Si 0.958 3.042 20 H -0.266 1.266 21 H -0.310 1.310 22 H -0.259 1.259 23 C 0.142 3.858 24 C 0.119 3.881 25 H 0.113 0.887 26 H 0.080 0.920 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.149 0.851 35 H 0.091 0.909 36 H 0.122 0.878 37 H 0.100 0.900 38 H 0.037 0.963 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.262 0.738 42 H 0.035 0.965 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.998 -8.488 13.169 23.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.035 4.035 4 C -0.165 4.165 5 C -0.251 4.251 6 C 0.342 3.658 7 O -0.470 6.470 8 N -0.375 5.375 9 C -0.009 4.009 10 C -0.117 4.117 11 H 0.154 0.846 12 C -0.150 4.150 13 C -0.004 4.004 14 N -0.332 5.332 15 C -0.379 4.379 16 H 0.039 0.961 17 C -0.232 4.232 18 N -0.605 5.605 19 Si 0.785 3.215 20 H -0.192 1.192 21 H -0.238 1.238 22 H -0.183 1.183 23 C 0.016 3.984 24 C 0.015 3.985 25 H 0.130 0.870 26 H 0.099 0.901 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.167 0.833 35 H 0.110 0.890 36 H 0.140 0.860 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.885 -8.291 12.392 22.526 hybrid contribution 1.033 0.728 -0.617 1.407 sum -15.852 -7.563 11.775 21.145 Atomic orbital electron populations 1.21691 0.92879 1.03095 1.02162 1.20802 0.97434 0.90045 1.04380 1.22819 0.89852 0.96724 0.94149 1.20861 1.01262 0.99356 0.95023 1.22437 1.09179 0.93232 1.00285 1.18823 0.76570 0.88479 0.81922 1.90767 1.54845 1.68991 1.32371 1.49927 1.66730 1.14449 1.06401 1.23782 0.99646 0.99800 0.77661 1.22873 0.93977 0.97313 0.97583 0.84574 1.21542 0.94990 0.97757 1.00676 1.21090 0.96079 0.97030 0.86201 1.43849 1.11089 1.75812 1.02468 1.18660 0.89378 1.42111 0.87711 0.96115 1.25961 0.96588 1.00212 1.00392 1.70062 1.05929 1.45040 1.39473 0.85705 0.76936 0.79962 0.78883 1.19169 1.23848 1.18292 1.20240 0.84343 0.95307 0.98491 1.22505 0.96474 0.85924 0.93626 0.86978 0.90081 0.92487 0.92908 0.89728 0.89325 0.93948 0.90672 0.91909 0.83289 0.89034 0.86042 0.88158 0.94436 0.93495 0.93725 0.92918 0.94613 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 9.89 71.98 0.71 -1.33 16 2 C -0.09 -1.61 6.02 29.84 0.18 -1.43 16 3 C -0.03 -0.92 5.37 -17.62 -0.09 -1.01 16 4 C -0.11 -3.56 8.34 71.24 0.59 -2.96 16 5 C -0.23 -6.81 9.43 23.43 0.22 -6.59 16 6 C 0.55 21.20 7.89 86.57 0.68 21.88 16 7 O -0.59 -28.58 12.14 -4.09 -0.05 -28.63 16 8 N -0.64 -20.77 3.33 -827.01 -2.76 -23.53 16 9 C 0.11 2.22 7.85 86.34 0.68 2.90 16 10 C -0.10 -2.36 4.42 -10.31 -0.05 -2.40 16 11 H 0.14 2.12 8.14 -2.39 -0.02 2.11 16 12 C -0.11 -3.48 5.58 30.24 0.17 -3.31 16 13 C 0.12 5.09 4.17 85.99 0.36 5.45 16 14 N -0.61 -31.07 2.77 -710.10 -1.97 -33.04 16 15 C -0.25 -15.76 9.94 84.03 0.83 -14.93 16 16 H 0.02 1.54 8.00 -2.91 -0.02 1.52 16 17 C -0.04 -2.33 5.14 84.86 0.44 -1.90 16 18 N -0.96 -64.35 13.97 21.65 0.30 -64.05 16 19 Si 0.96 48.26 24.50 68.60 1.68 49.94 16 20 H -0.27 -12.25 6.67 99.48 0.66 -11.59 16 21 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 22 H -0.26 -12.37 6.91 99.48 0.69 -11.68 16 23 C 0.14 6.31 6.14 85.81 0.53 6.84 16 24 C 0.12 3.78 4.26 43.75 0.19 3.97 16 25 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 26 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.09 1.34 8.00 -2.38 -0.02 1.32 16 31 H 0.04 1.76 7.35 -2.38 -0.02 1.74 16 32 H 0.07 1.94 8.00 -2.39 -0.02 1.92 16 33 H 0.06 2.26 7.09 -2.39 -0.02 2.24 16 34 H 0.15 3.30 7.88 -2.91 -0.02 3.28 16 35 H 0.09 1.62 7.97 -2.39 -0.02 1.60 16 36 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.04 1.40 7.69 -2.39 -0.02 1.38 16 39 H 0.05 2.24 4.43 -2.39 -0.01 2.23 16 40 H 0.04 1.72 7.47 -2.38 -0.02 1.70 16 41 H 0.26 16.47 8.31 -92.71 -0.77 15.70 16 42 H 0.04 1.89 6.26 -2.38 -0.01 1.88 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -85.72 333.55 3.56 -82.16 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: 0.91 Total: 11.97 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.44 Total: 5.18 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.42 Total: -120.62 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 48.26 SS G_CDS: 1.68 Total: 49.94 kcal Total: -85.72 3.56 -82.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221527957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.985 kcal (2) G-P(sol) polarization free energy of solvation -85.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds