Wall clock time and date at job start Tue Mar 31 2020 00:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47329 * 240.00126 * 2 1 3 5 5 C 1.47203 * 109.47014 * 119.99797 * 2 1 3 6 6 C 2.64600 * 109.47210 * 119.99920 * 2 1 3 7 7 C 4.07806 * 109.47137 * 120.00012 * 2 1 3 8 8 O 1.21616 * 119.99982 * 347.49979 * 7 6 5 9 9 N 1.34775 * 119.99637 * 167.50842 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.08999 * 109.46975 * 299.99686 * 1 2 3 25 25 H 1.08999 * 109.46862 * 59.99899 * 1 2 3 26 26 H 1.09003 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47003 * 300.00546 * 3 2 1 29 29 H 1.09000 * 109.46858 * 59.99721 * 3 2 1 30 30 H 1.09003 * 109.47184 * 299.99716 * 4 2 1 31 31 H 1.08998 * 109.47589 * 59.99835 * 4 2 1 32 32 H 1.08994 * 109.47461 * 180.02562 * 4 2 1 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1605 7 6 2.8894 -1.9224 3.3297 8 8 2.1450 -2.6507 3.9578 9 7 4.1635 -1.7505 3.7341 10 6 4.6519 -2.4416 4.9300 11 6 5.1118 -3.8516 4.5515 12 6 5.5930 -4.5818 5.8093 13 7 6.6211 -3.7657 6.4692 14 6 7.8453 -4.2985 6.7742 15 1 8.7153 -3.6602 6.8216 16 6 7.9679 -5.6586 7.0223 17 7 6.8991 -6.3770 7.2945 18 14 9.6499 -6.4697 6.9700 19 1 10.2655 -6.4203 8.3205 20 1 9.5041 -7.8847 6.5438 21 1 10.5172 -5.7486 6.0040 22 6 6.3108 -2.3673 6.7960 23 6 5.8249 -1.6604 5.5268 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 4.7572 -1.1698 3.2330 34 1 3.8490 -2.5084 5.6641 35 1 5.9298 -3.7852 3.8340 36 1 4.2814 -4.4006 4.1073 37 1 6.0154 -5.5477 5.5320 38 1 4.7537 -4.7315 6.4885 39 1 6.9849 -7.3274 7.4682 40 1 5.5289 -2.3343 7.5549 41 1 7.2062 -1.8727 7.1723 42 1 5.5003 -0.6498 5.7749 43 1 6.6379 -1.6139 4.8024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227273087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:27 Heat of formation + Delta-G solvation = 16.295208 kcal Electronic energy + Delta-G solvation = -21199.401721 eV Core-core repulsion = 18052.897176 eV Total energy + Delta-G solvation = -3146.504545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.67941 -37.85649 -37.28640 -34.44011 -32.63796 -31.84516 -30.04907 -29.44643 -27.70730 -27.68988 -25.45647 -23.78226 -22.25325 -21.78546 -20.68698 -19.55402 -18.17210 -16.75894 -16.19615 -15.94198 -14.97582 -14.82802 -14.65864 -14.50243 -14.21051 -13.75529 -13.51113 -13.00844 -12.86073 -12.84717 -12.61659 -12.43652 -12.12291 -12.10035 -11.67663 -11.62930 -11.50251 -11.16229 -10.97016 -10.71194 -10.58108 -10.41819 -10.36232 -10.26150 -10.12278 -10.01072 -9.76515 -9.56521 -8.76086 -8.42699 -6.68014 -5.78099 -3.21280 1.59877 2.24281 3.14910 3.38089 3.45094 3.47117 3.58843 4.06992 4.49898 4.51932 4.54476 4.64593 5.12312 5.20006 5.21447 5.31890 5.34921 5.41156 5.44404 5.44704 5.44995 5.61595 5.63886 5.71220 5.81623 5.86336 5.87379 6.06885 6.22769 6.30360 6.41990 6.58899 6.65000 6.76959 6.87497 6.93106 7.14619 7.37417 7.62194 7.69551 7.80003 8.28645 8.45649 9.21337 9.84639 10.41366 11.30568 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033653 B = 0.002986 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.813176 B = 9375.463149 C = 9426.422282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.084 4.084 6 C -0.212 4.212 7 C 0.626 3.374 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.150 3.850 11 C -0.148 4.148 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.255 4.255 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.149 3.851 23 C -0.139 4.139 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.398 0.602 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.090 0.910 38 H 0.022 0.978 39 H 0.254 0.746 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.056 0.944 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.865 14.964 -15.657 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.038 3.962 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.086 4.086 6 C -0.215 4.215 7 C 0.412 3.588 8 O -0.401 6.401 9 N -0.360 5.360 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.047 3.953 13 N -0.315 5.315 14 C -0.385 4.385 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.545 5.545 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.103 0.897 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.040 0.960 39 H 0.064 0.936 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.376 14.234 -15.113 22.780 hybrid contribution 1.090 -0.255 -0.255 1.149 sum -8.285 13.979 -15.368 22.366 Atomic orbital electron populations 1.21913 0.92395 1.02971 1.02678 1.17910 0.95992 0.94320 0.87991 1.21901 1.01779 0.93396 1.02748 1.21900 1.01809 1.00732 0.95442 1.22459 0.97650 0.94958 0.93543 1.20985 1.02402 1.01512 0.96568 1.14761 0.82352 0.80471 0.81220 1.90870 1.56301 1.37700 1.55215 1.46217 1.11036 1.48717 1.30009 1.21154 0.96445 0.92540 0.85107 1.22594 0.99775 0.94896 1.01538 1.20756 0.90707 0.94960 0.88848 1.44104 1.13458 1.06768 1.67213 1.19156 0.85094 0.91971 1.42235 0.91663 1.25069 0.96975 0.97996 0.99576 1.70032 1.27690 1.06849 1.49943 0.86309 0.83947 0.78715 0.77850 1.21374 1.21555 1.20504 1.20839 0.97981 0.86803 0.92241 1.22344 0.96839 0.98048 1.00624 0.91930 0.91255 0.91845 0.91871 0.91202 0.91957 0.91877 0.91179 0.91865 0.76814 0.89693 0.92555 0.92683 0.89200 0.96027 0.93551 0.96118 0.92238 0.92495 0.91738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.43 37.16 0.31 -0.68 16 2 C 0.04 0.30 0.95 -157.29 -0.15 0.15 16 3 C -0.14 -0.89 8.43 37.16 0.31 -0.57 16 4 C -0.14 -0.95 8.43 37.15 0.31 -0.64 16 5 C -0.08 -0.98 11.77 -37.12 -0.44 -1.41 16 6 C -0.21 -3.02 13.61 -38.83 -0.53 -3.55 16 7 C 0.63 10.53 7.61 -14.33 -0.11 10.42 16 8 O -0.52 -10.88 16.75 5.26 0.09 -10.79 16 9 N -0.71 -10.72 5.07 -56.19 -0.28 -11.00 16 10 C 0.15 2.67 2.41 -67.87 -0.16 2.51 16 11 C -0.15 -3.00 5.66 -26.60 -0.15 -3.15 16 12 C 0.17 4.26 5.30 -3.71 -0.02 4.24 16 13 N -0.59 -14.85 3.00 -172.32 -0.52 -15.36 16 14 C -0.25 -6.97 9.58 -15.06 -0.14 -7.12 16 15 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 17 N -0.90 -26.43 11.20 55.49 0.62 -25.81 16 18 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 23 C -0.14 -2.31 5.55 -26.61 -0.15 -2.46 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.40 4.83 8.57 -40.82 -0.35 4.48 16 34 H 0.08 1.68 7.58 -51.93 -0.39 1.28 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 2.46 6.06 -51.93 -0.31 2.14 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -32.05 354.54 -8.16 -40.20 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.36 Total: 0.01 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -1.02 Total: 0.76 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.18 Total: -52.18 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.05 -8.16 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227273087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.498 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds