Wall clock time and date at job start Tue Mar 31 2020 00:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47177 * 2 1 4 4 C 1.52994 * 109.47329 * 240.00126 * 2 1 3 5 5 C 1.47203 * 109.47014 * 119.99797 * 2 1 3 6 6 C 2.64600 * 109.47210 * 119.99920 * 2 1 3 7 7 C 4.07806 * 109.47137 * 120.00012 * 2 1 3 8 8 O 1.21616 * 119.99982 * 347.49979 * 7 6 5 9 9 N 1.34775 * 119.99637 * 167.50842 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.08999 * 109.46975 * 299.99686 * 1 2 3 25 25 H 1.08999 * 109.46862 * 59.99899 * 1 2 3 26 26 H 1.09003 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.47003 * 300.00546 * 3 2 1 29 29 H 1.09000 * 109.46858 * 59.99721 * 3 2 1 30 30 H 1.09003 * 109.47184 * 299.99716 * 4 2 1 31 31 H 1.08998 * 109.47589 * 59.99835 * 4 2 1 32 32 H 1.08994 * 109.47461 * 180.02562 * 4 2 1 33 33 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 34 34 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 35 35 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 36 36 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 37 37 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 38 38 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 39 39 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 41 41 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 42 42 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 43 43 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0207 -0.6939 1.2019 6 6 2.4121 -1.2473 2.1605 7 6 2.8894 -1.9224 3.3297 8 8 2.1450 -2.6507 3.9578 9 7 4.1635 -1.7505 3.7341 10 6 4.6519 -2.4416 4.9300 11 6 5.1118 -3.8516 4.5515 12 6 5.5930 -4.5818 5.8093 13 7 6.6211 -3.7657 6.4692 14 6 7.8453 -4.2985 6.7742 15 1 8.7153 -3.6602 6.8216 16 6 7.9679 -5.6586 7.0223 17 7 6.8991 -6.3770 7.2945 18 14 9.6499 -6.4697 6.9700 19 1 10.2655 -6.4203 8.3205 20 1 9.5041 -7.8847 6.5438 21 1 10.5172 -5.7486 6.0040 22 6 6.3108 -2.3673 6.7960 23 6 5.8249 -1.6604 5.5268 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6768 -1.7489 -1.2492 31 1 1.6768 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 4.7572 -1.1698 3.2330 34 1 3.8490 -2.5084 5.6641 35 1 5.9298 -3.7852 3.8340 36 1 4.2814 -4.4006 4.1073 37 1 6.0154 -5.5477 5.5320 38 1 4.7537 -4.7315 6.4885 39 1 6.9849 -7.3274 7.4682 40 1 5.5289 -2.3343 7.5549 41 1 7.2062 -1.8727 7.1723 42 1 5.5003 -0.6498 5.7749 43 1 6.6379 -1.6139 4.8024 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227273087.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:26 Heat of formation + Delta-G solvation = -3.402991 kcal Electronic energy + Delta-G solvation = -21200.255899 eV Core-core repulsion = 18052.897176 eV Total energy + Delta-G solvation = -3147.358723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08347 -39.02630 -38.45479 -36.10441 -34.13452 -33.23699 -31.77258 -31.18392 -28.20795 -28.18360 -27.23223 -25.22858 -23.95212 -23.25217 -21.79579 -21.16178 -19.51828 -18.64854 -17.50577 -16.95167 -16.68896 -16.25192 -15.80107 -15.37932 -15.32165 -15.21475 -15.16469 -14.78116 -14.38437 -14.14129 -13.36392 -13.31952 -13.22344 -13.04847 -12.77856 -12.69922 -12.61301 -12.56326 -12.30246 -12.26175 -12.15894 -12.09926 -11.89854 -11.65242 -11.58795 -11.33205 -11.26701 -11.23351 -10.59470 -10.15612 -8.72508 -7.88222 -5.34713 0.45586 1.21233 1.47344 1.49045 1.58825 1.97180 2.41895 2.51387 3.08695 3.28501 3.64397 3.79461 3.95262 3.96181 3.98896 4.02441 4.27136 4.32521 4.43985 4.63425 4.74070 4.74303 4.75766 4.81885 4.84369 4.96596 4.96859 4.99186 5.03291 5.07429 5.10397 5.20303 5.28935 5.35605 5.37661 5.38727 5.43936 5.63219 5.67959 6.14603 6.37462 6.38677 7.02645 7.12420 7.83160 8.36086 9.19152 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033653 B = 0.002986 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.813176 B = 9375.463149 C = 9426.422282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.030 3.970 3 C -0.139 4.139 4 C -0.141 4.141 5 C -0.038 4.038 6 C -0.267 4.267 7 C 0.629 3.371 8 O -0.574 6.574 9 N -0.693 5.693 10 C 0.160 3.840 11 C -0.133 4.133 12 C 0.183 3.817 13 N -0.610 5.610 14 C -0.262 4.262 15 H 0.075 0.925 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.267 1.267 22 C 0.141 3.859 23 C -0.121 4.121 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.095 0.905 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.417 0.583 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.046 0.954 37 H 0.056 0.944 38 H -0.009 1.009 39 H 0.249 0.751 40 H 0.013 0.987 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.237 17.779 -18.100 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.198 4.198 5 C -0.041 4.041 6 C -0.270 4.270 7 C 0.417 3.583 8 O -0.455 6.455 9 N -0.343 5.343 10 C 0.056 3.944 11 C -0.173 4.173 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.392 4.392 15 H 0.092 0.908 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.191 1.191 22 C 0.016 3.984 23 C -0.161 4.161 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.254 0.746 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.009 0.991 39 H 0.058 0.942 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.718 17.117 -17.585 26.043 hybrid contribution 0.822 -1.048 0.455 1.408 sum -7.896 16.069 -17.130 24.779 Atomic orbital electron populations 1.21952 0.91413 1.02741 1.03895 1.18327 0.96752 0.95237 0.86652 1.21923 1.01865 0.91915 1.03902 1.21932 1.01799 1.00400 0.95672 1.23395 0.95031 0.92658 0.92992 1.20559 1.05137 1.03898 0.97393 1.15002 0.82203 0.79663 0.81418 1.90839 1.57581 1.40036 1.57032 1.45892 1.10954 1.48288 1.29170 1.20828 0.96327 0.91580 0.85672 1.22343 0.99498 0.96164 0.99276 1.20454 0.89516 0.94426 0.89951 1.44354 1.12917 1.08426 1.67628 1.19566 0.86278 0.92372 1.40992 0.90773 1.25894 1.00412 0.98743 0.99948 1.70206 1.29905 1.06673 1.51715 0.85243 0.79824 0.77205 0.77964 1.21036 1.22233 1.19117 1.21047 0.98426 0.84804 0.94159 1.22151 0.96357 0.98880 0.98665 0.92452 0.88384 0.92848 0.91810 0.88608 0.92337 0.92835 0.88431 0.91958 0.74616 0.91878 0.91796 0.93565 0.92519 0.99107 0.94151 0.96865 0.91110 0.88834 0.90427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.43 71.98 0.61 -1.00 16 2 C 0.03 0.40 0.95 -53.99 -0.05 0.35 16 3 C -0.14 -1.26 8.43 71.98 0.61 -0.65 16 4 C -0.14 -1.47 8.43 71.98 0.61 -0.86 16 5 C -0.04 -0.83 11.77 31.13 0.37 -0.47 16 6 C -0.27 -7.48 13.61 30.02 0.41 -7.07 16 7 C 0.63 21.30 7.61 85.49 0.65 21.95 16 8 O -0.57 -24.73 16.75 -4.08 -0.07 -24.80 16 9 N -0.69 -20.21 5.07 -449.93 -2.28 -22.49 16 10 C 0.16 5.63 2.41 45.03 0.11 5.74 16 11 C -0.13 -5.48 5.66 30.68 0.17 -5.31 16 12 C 0.18 9.38 5.30 86.36 0.46 9.84 16 13 N -0.61 -30.91 3.00 -699.10 -2.09 -33.01 16 14 C -0.26 -14.37 9.58 84.03 0.81 -13.57 16 15 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 16 C -0.05 -3.10 4.92 84.86 0.42 -2.69 16 17 N -0.94 -57.14 11.20 21.65 0.24 -56.90 16 18 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 21 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 22 C 0.14 5.70 6.52 86.36 0.56 6.26 16 23 C -0.12 -3.77 5.55 30.67 0.17 -3.60 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.42 9.15 8.57 -92.71 -0.79 8.35 16 34 H 0.06 2.54 7.58 -2.39 -0.02 2.53 16 35 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.06 3.26 6.06 -2.39 -0.01 3.25 16 38 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 40 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.07 2.67 7.93 -2.39 -0.02 2.65 16 42 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 43 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -72.65 354.54 3.91 -68.74 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.19 Total: 12.41 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 5.89 Total: 8.93 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.13 Total: -112.39 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.07 Total: -24.80 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -72.65 3.91 -68.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227273087.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.335 kcal (2) G-P(sol) polarization free energy of solvation -72.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds