Wall clock time and date at job start Tue Mar 31 2020 00:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99485 * 2 1 4 4 C 1.53001 * 109.47077 * 272.53324 * 3 2 1 5 5 H 1.09001 * 112.73876 * 312.02435 * 4 3 2 6 6 C 1.53610 * 113.56182 * 82.78294 * 4 3 2 7 7 C 1.53491 * 83.30746 * 140.82436 * 6 4 3 8 8 N 1.47068 * 113.46526 * 181.28788 * 4 3 2 9 9 C 1.36938 * 136.06105 * 38.07755 * 8 4 3 10 10 H 1.07998 * 119.99615 * 351.62943 * 9 8 4 11 11 C 1.38816 * 120.00143 * 171.63238 * 9 8 4 12 12 N 1.31620 * 119.99960 * 168.41361 * 11 9 8 13 13 Si 1.86797 * 120.00024 * 348.41755 * 11 9 8 14 14 H 1.48499 * 109.47057 * 84.90955 * 13 11 9 15 15 H 1.48494 * 109.47161 * 204.91022 * 13 11 9 16 16 H 1.48500 * 109.46896 * 324.91179 * 13 11 9 17 17 C 1.34773 * 120.00128 * 180.02562 * 2 1 3 18 18 O 1.21609 * 120.00053 * 175.10236 * 17 2 1 19 19 C 1.43199 * 119.99832 * 355.09912 * 17 2 1 20 20 C 3.48135 * 79.70770 * 176.77384 * 2 1 3 21 21 C 4.89315 * 73.93650 * 176.32174 * 2 1 3 22 22 C 1.53001 * 109.47111 * 4.06569 * 21 20 19 23 23 C 1.53000 * 109.46688 * 124.06305 * 21 20 19 24 24 C 1.52998 * 109.46836 * 244.06388 * 21 20 19 25 25 H 1.09004 * 109.46982 * 90.00332 * 1 2 3 26 26 H 1.08996 * 109.46942 * 209.99976 * 1 2 3 27 27 H 1.08994 * 109.47304 * 330.00119 * 1 2 3 28 28 H 1.08997 * 109.46745 * 152.53731 * 3 2 1 29 29 H 1.08994 * 109.47294 * 32.53689 * 3 2 1 30 30 H 1.09001 * 114.20202 * 27.25255 * 6 4 3 31 31 H 1.08993 * 114.23903 * 254.40100 * 6 4 3 32 32 H 1.09007 * 113.46680 * 219.17202 * 7 6 4 33 33 H 1.08994 * 113.46852 * 88.78811 * 7 6 4 34 34 H 0.96991 * 119.99986 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47179 * 59.99657 * 22 21 20 36 36 H 1.08997 * 109.47150 * 180.02562 * 22 21 20 37 37 H 1.09008 * 109.46920 * 299.99920 * 22 21 20 38 38 H 1.08992 * 109.47358 * 60.00036 * 23 21 20 39 39 H 1.09006 * 109.46694 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47100 * 299.99441 * 23 21 20 41 41 H 1.08991 * 109.47323 * 60.00087 * 24 21 20 42 42 H 1.09009 * 109.46533 * 180.02562 * 24 21 20 43 43 H 1.09001 * 109.46846 * 299.99830 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3972 1.7423 -1.4411 5 1 2.7725 0.9552 -2.0951 6 6 1.1831 2.4869 -2.0166 7 6 2.2579 3.3829 -2.6474 8 7 3.1528 2.9998 -1.5449 9 6 4.2203 3.5649 -0.8997 10 1 4.6198 3.1020 -0.0095 11 6 4.7887 4.7326 -1.3898 12 7 5.6561 5.3997 -0.6582 13 14 4.3227 5.3573 -3.0874 14 1 3.0816 6.1673 -2.9932 15 1 5.4227 6.1977 -3.6248 16 1 4.0932 4.2035 -3.9936 17 6 2.1390 -1.1672 -0.0005 18 8 3.3517 -1.1690 -0.0904 19 6 1.4269 -2.4051 0.1049 20 6 0.8431 -3.4199 0.1928 21 6 0.1111 -4.6924 0.3017 22 6 -1.3935 -4.4224 0.2374 23 6 0.5139 -5.6127 -0.8524 24 6 0.4523 -5.3646 1.6330 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 3.1688 1.1275 0.4739 29 1 1.6288 2.0165 0.5527 30 1 0.5686 2.9859 -1.2673 31 1 0.6039 1.9090 -2.7368 32 1 1.9963 4.4411 -2.6463 33 1 2.5966 3.0336 -3.6227 34 1 6.0536 6.2154 -1.0008 35 1 -1.6365 -3.9435 -0.7110 36 1 -1.9355 -5.3646 0.3185 37 1 -1.6804 -3.7667 1.0596 38 1 1.5857 -5.8050 -0.8067 39 1 -0.0278 -6.5552 -0.7715 40 1 0.2708 -5.1337 -1.8009 41 1 0.1654 -4.7090 2.4551 42 1 -0.0894 -6.3072 1.7134 43 1 1.5242 -5.5569 1.6787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234194174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:00 Heat of formation + Delta-G solvation = 74.976505 kcal Electronic energy + Delta-G solvation = -21421.033280 eV Core-core repulsion = 18277.073348 eV Total energy + Delta-G solvation = -3143.959933 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.85544 -38.34522 -37.79122 -35.30260 -32.46069 -32.14603 -28.93170 -28.37825 -27.70848 -27.68984 -26.63258 -24.19678 -23.17917 -22.19073 -20.31127 -19.33837 -17.75604 -16.84418 -16.39118 -16.05528 -15.63176 -15.10587 -14.69944 -14.65395 -14.33018 -13.85294 -13.24720 -13.19029 -12.98412 -12.85192 -12.78225 -12.55666 -12.18307 -12.11171 -12.10135 -11.83958 -11.67670 -11.63200 -11.61844 -11.10849 -10.73346 -10.51621 -10.41666 -10.23820 -10.12704 -9.98559 -9.89365 -9.29187 -8.92872 -8.42367 -7.13446 -5.83573 -3.17060 1.58998 2.23562 3.01585 3.37821 3.47708 3.49311 3.56663 3.86978 4.52351 4.54164 4.58835 4.59526 4.77666 4.99656 5.13606 5.18336 5.19487 5.21595 5.34495 5.34795 5.40802 5.44235 5.44985 5.60880 5.63874 5.67804 5.73398 5.80510 5.86457 5.87365 5.93617 6.10788 6.24245 6.32143 6.42200 6.46440 6.58929 7.04335 7.14320 7.18329 7.42828 8.19971 8.41616 8.74196 9.69398 10.36152 11.33477 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.003371 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.007403 B = 8305.111900 C = 8568.309140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.599 5.599 3 C 0.118 3.882 4 C 0.136 3.864 5 H 0.051 0.949 6 C -0.153 4.153 7 C 0.098 3.902 8 N -0.618 5.618 9 C -0.219 4.219 10 H 0.102 0.898 11 C 0.013 3.987 12 N -0.924 5.924 13 Si 0.887 3.113 14 H -0.288 1.288 15 H -0.301 1.301 16 H -0.270 1.270 17 C 0.623 3.377 18 O -0.515 6.515 19 C -0.204 4.204 20 C -0.087 4.087 21 C 0.039 3.961 22 C -0.141 4.141 23 C -0.142 4.142 24 C -0.142 4.142 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.042 0.958 34 H 0.262 0.738 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.572 -20.033 1.630 27.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.332 5.332 3 C -0.005 4.005 4 C 0.028 3.972 5 H 0.068 0.932 6 C -0.191 4.191 7 C -0.027 4.027 8 N -0.345 5.345 9 C -0.345 4.345 10 H 0.120 0.880 11 C -0.184 4.184 12 N -0.570 5.570 13 Si 0.719 3.281 14 H -0.215 1.215 15 H -0.229 1.229 16 H -0.196 1.196 17 C 0.410 3.590 18 O -0.391 6.391 19 C -0.207 4.207 20 C -0.090 4.090 21 C 0.039 3.961 22 C -0.198 4.198 23 C -0.199 4.199 24 C -0.199 4.199 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.583 -19.726 1.716 26.481 hybrid contribution -0.034 0.511 -1.103 1.216 sum -17.617 -19.215 0.613 26.076 Atomic orbital electron populations 1.21799 0.79405 1.02927 1.02089 1.47684 1.07152 1.05906 1.72466 1.21888 0.97802 0.81918 0.98852 1.22383 0.90363 0.90349 0.94066 0.93153 1.23621 0.96117 0.99151 1.00260 1.22563 0.89423 0.98205 0.92521 1.46249 1.35745 1.15432 1.37107 1.18690 1.05172 1.05106 1.05522 0.88017 1.24704 0.97807 0.97445 0.98412 1.69719 1.32524 1.17840 1.36941 0.86806 0.76594 0.78499 0.86243 1.21489 1.22865 1.19551 1.14837 0.85766 0.80798 0.77552 1.90904 1.12902 1.86616 1.48722 1.20843 0.99308 0.95591 1.04909 1.22429 0.97266 0.94628 0.94658 1.17895 0.93909 0.86852 0.97453 1.21903 0.92600 1.02484 1.02826 1.21907 1.02337 0.98676 0.97018 1.21904 1.02523 1.00502 0.94973 0.92325 0.91500 0.90519 0.89236 0.89663 0.89800 0.92019 0.92991 0.94020 0.92788 0.91887 0.91262 0.91935 0.91843 0.91242 0.91917 0.91945 0.91225 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.35 59.85 0.62 1.47 16 2 N -0.60 -9.10 2.87 -184.48 -0.53 -9.63 16 3 C 0.12 2.13 5.36 -4.04 -0.02 2.11 16 4 C 0.14 2.74 4.31 -72.34 -0.31 2.43 16 5 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 6 C -0.15 -2.58 8.03 -26.16 -0.21 -2.79 16 7 C 0.10 2.11 5.58 -8.51 -0.05 2.06 16 8 N -0.62 -15.32 3.50 -176.80 -0.62 -15.94 16 9 C -0.22 -6.39 11.00 -15.06 -0.17 -6.56 16 10 H 0.10 3.15 8.06 -52.49 -0.42 2.72 16 11 C 0.01 0.39 5.50 -17.43 -0.10 0.30 16 12 N -0.92 -29.46 13.97 55.49 0.78 -28.68 16 13 Si 0.89 23.27 25.05 -169.99 -4.26 19.01 16 14 H -0.29 -7.30 6.81 56.52 0.38 -6.92 16 15 H -0.30 -8.00 7.11 56.52 0.40 -7.59 16 16 H -0.27 -6.85 5.77 56.52 0.33 -6.52 16 17 C 0.62 10.75 7.52 -14.34 -0.11 10.64 16 18 O -0.51 -11.19 16.67 5.27 0.09 -11.10 16 19 C -0.20 -2.90 11.67 -38.84 -0.45 -3.35 16 20 C -0.09 -1.00 11.77 -37.12 -0.44 -1.44 16 21 C 0.04 0.30 0.95 -157.29 -0.15 0.15 16 22 C -0.14 -0.81 8.43 37.16 0.31 -0.50 16 23 C -0.14 -0.97 8.43 37.16 0.31 -0.65 16 24 C -0.14 -0.94 8.43 37.16 0.31 -0.62 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.61 6.80 -51.93 -0.35 0.26 16 27 H 0.08 0.69 7.92 -51.93 -0.41 0.28 16 28 H 0.09 1.90 7.42 -51.93 -0.39 1.51 16 29 H 0.09 1.42 7.74 -51.93 -0.40 1.02 16 30 H 0.08 1.30 8.00 -51.93 -0.42 0.88 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 1.15 5.98 -51.93 -0.31 0.84 16 33 H 0.04 0.91 7.07 -51.93 -0.37 0.54 16 34 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.36 8.14 -51.92 -0.42 -0.07 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.32 8.14 -51.92 -0.42 -0.10 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 354.08 15.07 5.34 5.34 Total: -1.00 -35.21 354.08 -7.02 -42.23 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -7.37 Total: -4.46 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.44 Total: 3.24 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -0.37 Total: -54.26 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.26 Total: 19.01 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.21 -7.02 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234194174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.205 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds