Wall clock time and date at job start Tue Mar 31 2020 00:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46497 * 119.99485 * 2 1 4 4 C 1.53001 * 109.47077 * 272.53324 * 3 2 1 5 5 H 1.09001 * 112.73876 * 312.02435 * 4 3 2 6 6 C 1.53610 * 113.56182 * 82.78294 * 4 3 2 7 7 C 1.53491 * 83.30746 * 140.82436 * 6 4 3 8 8 N 1.47068 * 113.46526 * 181.28788 * 4 3 2 9 9 C 1.36938 * 136.06105 * 38.07755 * 8 4 3 10 10 H 1.07998 * 119.99615 * 351.62943 * 9 8 4 11 11 C 1.38816 * 120.00143 * 171.63238 * 9 8 4 12 12 N 1.31620 * 119.99960 * 168.41361 * 11 9 8 13 13 Si 1.86797 * 120.00024 * 348.41755 * 11 9 8 14 14 H 1.48499 * 109.47057 * 84.90955 * 13 11 9 15 15 H 1.48494 * 109.47161 * 204.91022 * 13 11 9 16 16 H 1.48500 * 109.46896 * 324.91179 * 13 11 9 17 17 C 1.34773 * 120.00128 * 180.02562 * 2 1 3 18 18 O 1.21609 * 120.00053 * 175.10236 * 17 2 1 19 19 C 1.43199 * 119.99832 * 355.09912 * 17 2 1 20 20 C 3.48135 * 79.70770 * 176.77384 * 2 1 3 21 21 C 4.89315 * 73.93650 * 176.32174 * 2 1 3 22 22 C 1.53001 * 109.47111 * 4.06569 * 21 20 19 23 23 C 1.53000 * 109.46688 * 124.06305 * 21 20 19 24 24 C 1.52998 * 109.46836 * 244.06388 * 21 20 19 25 25 H 1.09004 * 109.46982 * 90.00332 * 1 2 3 26 26 H 1.08996 * 109.46942 * 209.99976 * 1 2 3 27 27 H 1.08994 * 109.47304 * 330.00119 * 1 2 3 28 28 H 1.08997 * 109.46745 * 152.53731 * 3 2 1 29 29 H 1.08994 * 109.47294 * 32.53689 * 3 2 1 30 30 H 1.09001 * 114.20202 * 27.25255 * 6 4 3 31 31 H 1.08993 * 114.23903 * 254.40100 * 6 4 3 32 32 H 1.09007 * 113.46680 * 219.17202 * 7 6 4 33 33 H 1.08994 * 113.46852 * 88.78811 * 7 6 4 34 34 H 0.96991 * 119.99986 * 179.97438 * 12 11 9 35 35 H 1.08993 * 109.47179 * 59.99657 * 22 21 20 36 36 H 1.08997 * 109.47150 * 180.02562 * 22 21 20 37 37 H 1.09008 * 109.46920 * 299.99920 * 22 21 20 38 38 H 1.08992 * 109.47358 * 60.00036 * 23 21 20 39 39 H 1.09006 * 109.46694 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47100 * 299.99441 * 23 21 20 41 41 H 1.08991 * 109.47323 * 60.00087 * 24 21 20 42 42 H 1.09009 * 109.46533 * 180.02562 * 24 21 20 43 43 H 1.09001 * 109.46846 * 299.99830 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3972 1.7423 -1.4411 5 1 2.7725 0.9552 -2.0951 6 6 1.1831 2.4869 -2.0166 7 6 2.2579 3.3829 -2.6474 8 7 3.1528 2.9998 -1.5449 9 6 4.2203 3.5649 -0.8997 10 1 4.6198 3.1020 -0.0095 11 6 4.7887 4.7326 -1.3898 12 7 5.6561 5.3997 -0.6582 13 14 4.3227 5.3573 -3.0874 14 1 3.0816 6.1673 -2.9932 15 1 5.4227 6.1977 -3.6248 16 1 4.0932 4.2035 -3.9936 17 6 2.1390 -1.1672 -0.0005 18 8 3.3517 -1.1690 -0.0904 19 6 1.4269 -2.4051 0.1049 20 6 0.8431 -3.4199 0.1928 21 6 0.1111 -4.6924 0.3017 22 6 -1.3935 -4.4224 0.2374 23 6 0.5139 -5.6127 -0.8524 24 6 0.4523 -5.3646 1.6330 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 3.1688 1.1275 0.4739 29 1 1.6288 2.0165 0.5527 30 1 0.5686 2.9859 -1.2673 31 1 0.6039 1.9090 -2.7368 32 1 1.9963 4.4411 -2.6463 33 1 2.5966 3.0336 -3.6227 34 1 6.0536 6.2154 -1.0008 35 1 -1.6365 -3.9435 -0.7110 36 1 -1.9355 -5.3646 0.3185 37 1 -1.6804 -3.7667 1.0596 38 1 1.5857 -5.8050 -0.8067 39 1 -0.0278 -6.5552 -0.7715 40 1 0.2708 -5.1337 -1.8009 41 1 0.1654 -4.7090 2.4551 42 1 -0.0894 -6.3072 1.7134 43 1 1.5242 -5.5569 1.6787 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234194174.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:35:59 Heat of formation + Delta-G solvation = 51.390216 kcal Electronic energy + Delta-G solvation = -21422.056059 eV Core-core repulsion = 18277.073348 eV Total energy + Delta-G solvation = -3144.982711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.24717 -39.95675 -38.45865 -36.65717 -34.43993 -33.40347 -30.59686 -30.07670 -28.20078 -28.15412 -27.71279 -25.65505 -25.02395 -23.36713 -21.39426 -21.02404 -19.09296 -18.67686 -17.77495 -17.37497 -16.87743 -16.65237 -15.90481 -15.59063 -15.21280 -15.14984 -14.93145 -14.83647 -14.20372 -14.06359 -13.72886 -13.44046 -13.33416 -13.30347 -13.22318 -12.72981 -12.67276 -12.59280 -12.58744 -12.25973 -12.24089 -12.03198 -11.97185 -11.80105 -11.61539 -11.30914 -11.14803 -11.10946 -11.05092 -9.80200 -9.19598 -8.14051 -5.43948 0.44835 1.21133 1.27638 1.35753 1.43213 1.84375 2.40519 2.41012 2.88278 3.07828 3.15202 3.59692 3.88380 3.97654 3.98495 4.09954 4.16559 4.28163 4.29999 4.39734 4.54385 4.64094 4.68246 4.75278 4.77866 4.85322 4.86234 4.87466 4.88779 4.97765 4.98537 4.99327 5.09151 5.15376 5.21999 5.36579 5.37734 5.41259 5.54220 6.14805 6.15606 6.20507 6.50658 6.91102 7.42224 8.25625 9.07163 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.035167 B = 0.003371 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.007403 B = 8305.111900 C = 8568.309140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.592 5.592 3 C 0.130 3.870 4 C 0.130 3.870 5 H 0.033 0.967 6 C -0.113 4.113 7 C 0.085 3.915 8 N -0.647 5.647 9 C -0.208 4.208 10 H 0.062 0.938 11 C -0.053 4.053 12 N -0.974 5.974 13 Si 0.955 3.045 14 H -0.269 1.269 15 H -0.309 1.309 16 H -0.257 1.257 17 C 0.619 3.381 18 O -0.580 6.580 19 C -0.259 4.259 20 C -0.038 4.038 21 C 0.032 3.968 22 C -0.138 4.138 23 C -0.143 4.143 24 C -0.142 4.142 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.098 0.902 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.261 0.739 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.097 0.903 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.151 -21.823 0.408 31.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.322 5.322 3 C 0.006 3.994 4 C 0.023 3.977 5 H 0.051 0.949 6 C -0.151 4.151 7 C -0.039 4.039 8 N -0.375 5.375 9 C -0.336 4.336 10 H 0.079 0.921 11 C -0.245 4.245 12 N -0.623 5.623 13 Si 0.783 3.217 14 H -0.195 1.195 15 H -0.237 1.237 16 H -0.182 1.182 17 C 0.409 3.591 18 O -0.462 6.462 19 C -0.262 4.262 20 C -0.041 4.041 21 C 0.032 3.968 22 C -0.195 4.195 23 C -0.200 4.200 24 C -0.199 4.199 25 H 0.096 0.904 26 H 0.100 0.900 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.266 -21.550 0.483 30.991 hybrid contribution 1.323 0.877 -0.640 1.711 sum -20.944 -20.673 -0.157 29.429 Atomic orbital electron populations 1.22149 0.75868 1.04785 1.03907 1.47711 1.09094 1.04216 1.71202 1.21562 0.96557 0.83690 0.97605 1.22571 0.91355 0.88773 0.94966 0.94909 1.23471 0.94314 0.96854 1.00455 1.22826 0.90203 0.99113 0.91764 1.46438 1.34974 1.17856 1.38229 1.18546 1.05832 1.04647 1.04562 0.92054 1.25481 0.98543 0.98107 1.02408 1.69883 1.34794 1.18716 1.38938 0.85733 0.76593 0.78167 0.81202 1.19479 1.23705 1.18199 1.15237 0.85217 0.82235 0.76405 1.90858 1.15709 1.87651 1.51959 1.20346 1.01603 0.96097 1.08144 1.23351 0.95305 0.94205 0.91229 1.18319 0.94999 0.84980 0.98512 1.21922 0.90666 1.03963 1.02969 1.21946 1.01977 0.99699 0.96348 1.21941 1.02185 1.01711 0.94071 0.90389 0.90024 0.88387 0.93857 0.87777 0.87438 0.87693 0.93190 0.93776 0.93024 0.91842 0.88796 0.91746 0.93138 0.88379 0.92193 0.92075 0.88390 0.93121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.32 10.35 127.77 1.32 2.64 16 2 N -0.59 -17.72 2.87 -855.81 -2.46 -20.17 16 3 C 0.13 4.75 5.36 86.38 0.46 5.22 16 4 C 0.13 5.17 4.31 41.83 0.18 5.35 16 5 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 6 C -0.11 -3.36 8.03 30.96 0.25 -3.11 16 7 C 0.09 3.45 5.58 83.17 0.46 3.92 16 8 N -0.65 -32.22 3.50 -713.29 -2.50 -34.72 16 9 C -0.21 -12.67 11.00 84.03 0.92 -11.75 16 10 H 0.06 4.11 8.06 -2.91 -0.02 4.08 16 11 C -0.05 -3.30 5.50 84.86 0.47 -2.83 16 12 N -0.97 -64.72 13.97 21.65 0.30 -64.41 16 13 Si 0.95 48.63 25.05 68.60 1.72 50.34 16 14 H -0.27 -12.75 6.81 99.48 0.68 -12.07 16 15 H -0.31 -15.97 7.11 99.48 0.71 -15.26 16 16 H -0.26 -12.39 5.77 99.48 0.57 -11.82 16 17 C 0.62 22.18 7.52 85.49 0.64 22.82 16 18 O -0.58 -27.20 16.67 -4.06 -0.07 -27.27 16 19 C -0.26 -7.35 11.67 30.01 0.35 -7.00 16 20 C -0.04 -0.82 11.77 31.12 0.37 -0.46 16 21 C 0.03 0.40 0.95 -53.99 -0.05 0.35 16 22 C -0.14 -1.04 8.43 71.98 0.61 -0.43 16 23 C -0.14 -1.54 8.43 71.98 0.61 -0.93 16 24 C -0.14 -1.48 8.43 71.98 0.61 -0.88 16 25 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.08 1.25 6.80 -2.39 -0.02 1.23 16 27 H 0.10 1.36 7.92 -2.39 -0.02 1.34 16 28 H 0.04 1.98 7.42 -2.39 -0.02 1.97 16 29 H 0.10 3.38 7.74 -2.39 -0.02 3.36 16 30 H 0.11 2.75 8.00 -2.39 -0.02 2.73 16 31 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.05 2.06 5.98 -2.38 -0.01 2.04 16 33 H 0.04 1.79 7.07 -2.39 -0.02 1.77 16 34 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 40 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -83.60 354.08 5.00 -78.59 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: 0.81 Total: 4.74 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 7.20 Total: 12.91 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -4.66 Total: -119.31 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.07 Total: -27.27 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 1.72 Total: 50.34 kcal Total: -83.60 5.00 -78.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234194174.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.983 kcal (2) G-P(sol) polarization free energy of solvation -83.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds