Wall clock time and date at job start Tue Mar 31 2020 00:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62257 * 2 1 4 4 C 1.34475 * 108.70072 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.15960 * 179.73891 * 4 3 2 6 6 C 1.34320 * 107.67324 * 359.97438 * 4 3 2 7 7 C 1.50702 * 126.44840 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46844 * 60.72259 * 7 6 4 9 9 C 1.46901 * 110.99843 * 186.95929 * 8 7 6 10 10 C 1.50698 * 109.46978 * 163.82307 * 9 8 7 11 11 H 1.08001 * 119.99988 * 4.62234 * 10 9 8 12 12 C 1.37877 * 119.99880 * 184.62835 * 10 9 8 13 13 N 1.31508 * 120.00075 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47047 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47277 * 120.00063 * 14 12 10 17 17 H 1.48504 * 109.47118 * 240.00002 * 14 12 10 18 18 C 1.46905 * 110.99665 * 63.00850 * 8 7 6 19 19 C 1.54263 * 110.03291 * 34.24081 * 18 8 7 20 20 C 1.54964 * 104.15820 * 217.13694 * 19 18 8 21 21 C 1.54886 * 102.78012 * 37.88517 * 20 19 18 22 22 C 1.53872 * 110.03002 * 277.01786 * 18 8 7 23 23 O 1.33976 * 125.61909 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46980 * 90.02616 * 1 2 3 25 25 H 1.08995 * 109.47204 * 210.02344 * 1 2 3 26 26 H 1.09001 * 109.47423 * 330.02650 * 1 2 3 27 27 H 1.09002 * 109.47342 * 90.02501 * 5 4 3 28 28 H 1.09004 * 109.46799 * 210.02037 * 5 4 3 29 29 H 1.08997 * 109.47491 * 330.01906 * 5 4 3 30 30 H 1.08995 * 109.47448 * 180.72599 * 7 6 4 31 31 H 1.08999 * 109.46869 * 300.73180 * 7 6 4 32 32 H 1.09003 * 109.46831 * 283.81757 * 9 8 7 33 33 H 1.08993 * 109.46962 * 43.82002 * 9 8 7 34 34 H 0.97005 * 120.00091 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.01328 * 155.62813 * 18 8 7 36 36 H 1.09004 * 110.48946 * 335.78352 * 19 18 8 37 37 H 1.09001 * 110.49262 * 98.42592 * 19 18 8 38 38 H 1.08998 * 110.72144 * 279.56996 * 20 19 18 39 39 H 1.09004 * 110.92575 * 156.29604 * 20 19 18 40 40 H 1.08994 * 110.48746 * 203.40379 * 21 20 19 41 41 H 1.09013 * 110.59817 * 80.81763 * 21 20 19 42 42 H 1.08996 * 110.03573 * 238.56410 * 22 18 8 43 43 H 1.08998 * 110.03528 * 359.96148 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 4.7570 1.5726 -0.0048 6 6 3.5698 -0.6757 0.0015 7 6 4.7937 -1.5550 0.0018 8 7 5.5868 -1.2898 1.2096 9 6 6.8683 -2.0065 1.1657 10 6 7.8065 -1.4212 2.1895 11 1 7.4596 -0.6499 2.8613 12 6 9.1077 -1.8703 2.2687 13 7 9.5299 -2.8097 1.4510 14 14 10.2708 -1.1442 3.5373 15 1 9.5568 -0.1107 4.3293 16 1 10.7493 -2.2195 4.4429 17 1 11.4312 -0.5249 2.8479 18 6 4.8317 -1.6351 2.4215 19 6 3.9298 -2.8572 2.1519 20 6 2.6375 -2.5588 2.9533 21 6 2.4600 -1.0321 2.7612 22 6 3.8979 -0.4751 2.8091 23 8 2.2872 -1.0891 0.0005 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 5.0488 1.7953 1.0216 28 1 5.5815 1.0771 -0.5175 29 1 4.5124 2.5002 -0.5223 30 1 4.4892 -2.6015 -0.0104 31 1 5.3949 -1.3411 -0.8818 32 1 6.7025 -3.0611 1.3858 33 1 7.3063 -1.9071 0.1726 34 1 10.4455 -3.1254 1.5064 35 1 5.5184 -1.8511 3.2400 36 1 3.7080 -2.9405 1.0879 37 1 4.4035 -3.7688 2.5162 38 1 2.7723 -2.8023 4.0072 39 1 1.7881 -3.1016 2.5386 40 1 1.8614 -0.6129 3.5697 41 1 1.9999 -0.8180 1.7964 42 1 4.1307 -0.1289 3.8160 43 1 4.0055 0.3443 2.0984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236592037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:22 Heat of formation + Delta-G solvation = 38.699635 kcal Electronic energy + Delta-G solvation = -23538.200046 eV Core-core repulsion = 20392.667030 eV Total energy + Delta-G solvation = -3145.533016 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.33834 -38.72476 -35.00224 -34.67228 -33.02772 -32.08240 -29.36978 -28.73144 -28.02295 -27.45071 -25.57829 -23.47923 -21.72255 -21.34515 -20.49659 -20.23290 -18.67613 -17.16608 -16.37139 -16.00859 -15.49750 -15.27543 -14.58335 -14.19653 -13.92061 -13.82384 -13.29398 -12.97335 -12.94322 -12.76317 -12.58598 -12.42044 -12.27939 -11.80637 -11.60633 -11.41944 -11.06986 -10.94081 -10.73673 -10.72132 -10.59029 -10.54428 -10.37826 -10.19752 -9.98615 -9.85936 -9.78913 -9.30240 -8.46925 -8.02509 -7.32424 -6.06144 -4.07048 1.75099 2.87567 2.97062 3.29506 3.37532 3.42509 4.20556 4.40641 4.80358 5.02005 5.08088 5.14293 5.21727 5.27230 5.28159 5.30377 5.40259 5.50408 5.62619 5.77890 5.91207 5.93542 6.04168 6.06454 6.08809 6.11358 6.16323 6.23982 6.29013 6.32820 6.33732 6.46741 6.48000 6.67408 6.76487 6.82043 6.90280 7.16465 7.28352 7.76438 7.99754 8.07382 8.14294 8.45405 9.00722 9.57297 11.04498 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.005527 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.481399 B = 5065.064108 C = 5421.858417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C 0.167 3.833 3 N -0.479 5.479 4 C 0.003 3.997 5 C -0.061 4.061 6 C -0.018 4.018 7 C 0.127 3.873 8 N -0.517 5.517 9 C 0.193 3.807 10 C -0.502 4.502 11 H 0.064 0.936 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.272 1.272 16 H -0.286 1.286 17 H -0.284 1.284 18 C 0.089 3.911 19 C -0.167 4.167 20 C -0.114 4.114 21 C -0.142 4.142 22 C -0.125 4.125 23 O -0.201 6.201 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.097 0.903 32 H -0.007 1.007 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.053 0.947 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 2.973 -2.124 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.039 4.039 3 N -0.211 5.211 4 C -0.118 4.118 5 C -0.118 4.118 6 C -0.071 4.071 7 C -0.002 4.002 8 N -0.241 5.241 9 C 0.069 3.931 10 C -0.541 4.541 11 H 0.082 0.918 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.212 1.212 17 H -0.210 1.210 18 C -0.020 4.020 19 C -0.206 4.206 20 C -0.152 4.152 21 C -0.179 4.179 22 C -0.163 4.163 23 O -0.088 6.088 24 H 0.105 0.895 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.096 0.904 28 H 0.098 0.902 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.011 0.989 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -15.818 3.943 -2.157 16.444 hybrid contribution 0.805 -1.323 0.726 1.710 sum -15.013 2.620 -1.431 15.307 Atomic orbital electron populations 1.20170 0.82146 1.04650 1.04109 1.25795 0.96091 0.79179 1.02791 1.70301 1.02021 1.30311 1.18421 1.21322 0.92687 0.92295 1.05465 1.20054 0.91863 0.96612 1.03267 1.23187 0.82840 0.95295 1.05811 1.20636 0.87656 0.95149 0.96715 1.62427 1.04269 1.58801 0.98613 1.19779 0.83455 0.91473 0.98387 1.21136 0.94951 1.20949 1.17036 0.91750 1.24957 0.98140 0.95168 0.96212 1.69958 1.17185 1.28930 1.37759 0.86465 0.80818 0.78986 0.81311 1.19640 1.21189 1.21021 1.22266 0.93950 0.91607 0.94221 1.23251 0.96516 0.99597 1.01231 1.22322 0.97229 0.96021 0.99579 1.22774 0.97786 0.95625 1.01755 1.22457 0.93245 0.99296 1.01308 1.84412 1.16908 1.37634 1.69883 0.89530 0.89811 0.88534 0.90382 0.90238 0.92121 0.92685 0.88519 0.98905 0.94814 0.92971 0.89038 0.90370 0.92066 0.92172 0.92691 0.93074 0.90825 0.92796 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.47 10.51 36.00 0.38 -0.09 16 2 C 0.17 2.34 6.30 -12.95 -0.08 2.26 16 3 N -0.48 -7.73 11.29 -7.36 -0.08 -7.81 16 4 C 0.00 0.04 5.06 -82.81 -0.42 -0.38 16 5 C -0.06 -0.95 9.89 36.01 0.36 -0.60 16 6 C -0.02 -0.31 3.75 -35.69 -0.13 -0.44 16 7 C 0.13 2.23 4.51 -4.97 -0.02 2.20 16 8 N -0.52 -10.41 4.17 -228.18 -0.95 -11.36 16 9 C 0.19 4.72 4.68 -4.98 -0.02 4.69 16 10 C -0.50 -13.48 8.39 -34.44 -0.29 -13.77 16 11 H 0.06 1.74 7.70 -52.49 -0.40 1.33 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -25.89 13.29 55.43 0.74 -25.16 16 14 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 15 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.09 1.69 2.68 -66.60 -0.18 1.51 16 19 C -0.17 -2.84 5.79 -25.03 -0.15 -2.99 16 20 C -0.11 -1.68 6.91 -24.70 -0.17 -1.85 16 21 C -0.14 -2.17 6.23 -25.07 -0.16 -2.33 16 22 C -0.13 -2.18 5.68 -25.61 -0.15 -2.33 16 23 O -0.20 -3.11 8.74 5.34 0.05 -3.07 16 24 H 0.09 0.62 8.14 -51.92 -0.42 0.19 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.28 7.40 -51.93 -0.38 0.89 16 28 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.96 5.50 -51.93 -0.29 0.67 16 31 H 0.10 1.65 7.93 -51.93 -0.41 1.23 16 32 H -0.01 -0.18 8.02 -51.93 -0.42 -0.60 16 33 H 0.03 0.87 7.85 -51.93 -0.41 0.47 16 34 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.09 1.97 7.06 -51.93 -0.37 1.60 16 36 H 0.08 1.33 4.02 -51.93 -0.21 1.13 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.07 1.12 2.63 -51.92 -0.14 0.99 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.08 1.51 3.85 -51.93 -0.20 1.31 16 LS Contribution 325.62 15.07 4.91 4.91 Total: -1.00 -29.44 325.62 -8.06 -37.50 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -6.57 Total: 1.41 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -1.13 Total: -12.65 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.30 Total: -44.33 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: 0.05 Total: -3.07 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.44 -8.06 -37.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236592037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.204 kcal (2) G-P(sol) polarization free energy of solvation -29.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds