Wall clock time and date at job start Tue Mar 31 2020 00:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30257 * 125.62257 * 2 1 4 4 C 1.34475 * 108.70072 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.15960 * 179.73891 * 4 3 2 6 6 C 1.34320 * 107.67324 * 359.97438 * 4 3 2 7 7 C 1.50702 * 126.44840 * 179.97438 * 6 4 3 8 8 N 1.46901 * 109.46844 * 60.72259 * 7 6 4 9 9 C 1.46901 * 110.99843 * 186.95929 * 8 7 6 10 10 C 1.50698 * 109.46978 * 163.82307 * 9 8 7 11 11 H 1.08001 * 119.99988 * 4.62234 * 10 9 8 12 12 C 1.37877 * 119.99880 * 184.62835 * 10 9 8 13 13 N 1.31508 * 120.00075 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99969 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47047 * 359.97438 * 14 12 10 16 16 H 1.48497 * 109.47277 * 120.00063 * 14 12 10 17 17 H 1.48504 * 109.47118 * 240.00002 * 14 12 10 18 18 C 1.46905 * 110.99665 * 63.00850 * 8 7 6 19 19 C 1.54263 * 110.03291 * 34.24081 * 18 8 7 20 20 C 1.54964 * 104.15820 * 217.13694 * 19 18 8 21 21 C 1.54886 * 102.78012 * 37.88517 * 20 19 18 22 22 C 1.53872 * 110.03002 * 277.01786 * 18 8 7 23 23 O 1.33976 * 125.61909 * 179.97438 * 2 1 3 24 24 H 1.09007 * 109.46980 * 90.02616 * 1 2 3 25 25 H 1.08995 * 109.47204 * 210.02344 * 1 2 3 26 26 H 1.09001 * 109.47423 * 330.02650 * 1 2 3 27 27 H 1.09002 * 109.47342 * 90.02501 * 5 4 3 28 28 H 1.09004 * 109.46799 * 210.02037 * 5 4 3 29 29 H 1.08997 * 109.47491 * 330.01906 * 5 4 3 30 30 H 1.08995 * 109.47448 * 180.72599 * 7 6 4 31 31 H 1.08999 * 109.46869 * 300.73180 * 7 6 4 32 32 H 1.09003 * 109.46831 * 283.81757 * 9 8 7 33 33 H 1.08993 * 109.46962 * 43.82002 * 9 8 7 34 34 H 0.97005 * 120.00091 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.01328 * 155.62813 * 18 8 7 36 36 H 1.09004 * 110.48946 * 335.78352 * 19 18 8 37 37 H 1.09001 * 110.49262 * 98.42592 * 19 18 8 38 38 H 1.08998 * 110.72144 * 279.56996 * 20 19 18 39 39 H 1.09004 * 110.92575 * 156.29604 * 20 19 18 40 40 H 1.08994 * 110.48746 * 203.40379 * 21 20 19 41 41 H 1.09013 * 110.59817 * 80.81763 * 21 20 19 42 42 H 1.08996 * 110.03573 * 238.56410 * 22 18 8 43 43 H 1.08998 * 110.03528 * 359.96148 * 22 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2657 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 4.7570 1.5726 -0.0048 6 6 3.5698 -0.6757 0.0015 7 6 4.7937 -1.5550 0.0018 8 7 5.5868 -1.2898 1.2096 9 6 6.8683 -2.0065 1.1657 10 6 7.8065 -1.4212 2.1895 11 1 7.4596 -0.6499 2.8613 12 6 9.1077 -1.8703 2.2687 13 7 9.5299 -2.8097 1.4510 14 14 10.2708 -1.1442 3.5373 15 1 9.5568 -0.1107 4.3293 16 1 10.7493 -2.2195 4.4429 17 1 11.4312 -0.5249 2.8479 18 6 4.8317 -1.6351 2.4215 19 6 3.9298 -2.8572 2.1519 20 6 2.6375 -2.5588 2.9533 21 6 2.4600 -1.0321 2.7612 22 6 3.8979 -0.4751 2.8091 23 8 2.2872 -1.0891 0.0005 24 1 -0.3633 -0.0005 -1.0277 25 1 -0.3633 -0.8897 0.5142 26 1 -0.3634 0.8902 0.5134 27 1 5.0488 1.7953 1.0216 28 1 5.5815 1.0771 -0.5175 29 1 4.5124 2.5002 -0.5223 30 1 4.4892 -2.6015 -0.0104 31 1 5.3949 -1.3411 -0.8818 32 1 6.7025 -3.0611 1.3858 33 1 7.3063 -1.9071 0.1726 34 1 10.4455 -3.1254 1.5064 35 1 5.5184 -1.8511 3.2400 36 1 3.7080 -2.9405 1.0879 37 1 4.4035 -3.7688 2.5162 38 1 2.7723 -2.8023 4.0072 39 1 1.7881 -3.1016 2.5386 40 1 1.8614 -0.6129 3.5697 41 1 1.9999 -0.8180 1.7964 42 1 4.1307 -0.1289 3.8160 43 1 4.0055 0.3443 2.0984 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236592037.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:21 Heat of formation + Delta-G solvation = 19.133231 kcal Electronic energy + Delta-G solvation = -23539.048509 eV Core-core repulsion = 20392.667030 eV Total energy + Delta-G solvation = -3146.381479 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.54274 -40.20628 -36.40193 -36.00944 -34.77934 -33.50199 -30.54075 -30.11168 -29.47254 -28.97163 -27.19127 -24.95009 -23.47331 -22.55385 -21.75132 -21.48238 -20.16297 -18.61180 -18.18099 -17.31431 -16.99433 -16.79841 -16.32154 -15.48551 -15.40958 -14.99852 -14.51433 -14.36883 -14.30730 -14.01508 -13.83462 -13.68665 -13.52525 -13.35317 -13.03441 -12.80038 -12.74976 -12.61407 -12.46121 -12.22439 -11.98184 -11.88370 -11.77862 -11.65626 -11.47770 -11.32655 -11.29667 -11.20526 -10.58977 -9.27855 -8.99054 -8.18398 -6.26706 0.55464 1.40592 1.42323 1.54665 1.69731 1.78029 2.41713 3.13044 3.17477 3.28952 3.72370 3.78743 3.86681 3.94483 4.02966 4.21653 4.37033 4.52348 4.56611 4.59079 4.64728 4.68934 4.73736 4.75496 4.82201 4.85388 4.91876 4.97322 5.03042 5.05153 5.09887 5.11495 5.18853 5.22423 5.29632 5.38877 5.42231 5.47547 5.59838 5.69054 6.06362 6.37737 6.55289 6.87585 6.88057 7.42149 8.92143 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.005527 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.481399 B = 5065.064108 C = 5421.858417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.184 3.816 3 N -0.505 5.505 4 C -0.001 4.001 5 C -0.057 4.057 6 C -0.033 4.033 7 C 0.130 3.870 8 N -0.518 5.518 9 C 0.211 3.789 10 C -0.513 4.513 11 H 0.058 0.942 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.267 1.267 16 H -0.281 1.281 17 H -0.279 1.279 18 C 0.087 3.913 19 C -0.165 4.165 20 C -0.105 4.105 21 C -0.135 4.135 22 C -0.122 4.122 23 O -0.204 6.204 24 H 0.109 0.891 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.096 0.904 32 H -0.032 1.032 33 H 0.013 0.987 34 H 0.263 0.737 35 H 0.059 0.941 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.051 0.949 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 3.605 -1.617 18.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.022 4.022 3 N -0.236 5.236 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.086 4.086 7 C 0.002 3.998 8 N -0.242 5.242 9 C 0.085 3.915 10 C -0.551 4.551 11 H 0.076 0.924 12 C -0.191 4.191 13 N -0.573 5.573 14 Si 0.787 3.213 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.022 4.022 19 C -0.203 4.203 20 C -0.143 4.143 21 C -0.173 4.173 22 C -0.160 4.160 23 O -0.092 6.092 24 H 0.127 0.873 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.114 0.886 32 H -0.015 1.015 33 H 0.031 0.969 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.131 4.591 -1.649 18.775 hybrid contribution 1.417 -1.505 0.531 2.134 sum -16.713 3.086 -1.119 17.033 Atomic orbital electron populations 1.20545 0.78296 1.06355 1.06110 1.26964 0.97757 0.78170 0.99269 1.70344 1.01764 1.31232 1.20233 1.21425 0.93305 0.92366 1.04976 1.19999 0.91624 0.97204 1.02632 1.22711 0.83026 0.94892 1.07942 1.20509 0.88182 0.95692 0.95370 1.62309 1.03565 1.58042 1.00280 1.19383 0.85371 0.90233 0.96468 1.21385 0.95698 1.20683 1.17338 0.92370 1.25768 0.99789 0.95486 0.98094 1.70067 1.17713 1.30177 1.39354 0.85439 0.78627 0.78313 0.78872 1.19094 1.20670 1.20427 1.22233 0.93811 0.93570 0.92593 1.23188 0.97374 0.98033 1.01701 1.22300 0.96407 0.95856 0.99701 1.22737 0.96149 0.95770 1.02604 1.22401 0.94534 0.98298 1.00778 1.84412 1.16404 1.38216 1.70188 0.87255 0.87710 0.87154 0.91426 0.91095 0.90631 0.92426 0.88625 1.01464 0.96915 0.92768 0.92299 0.90319 0.93108 0.91450 0.90497 0.91318 0.90537 0.92985 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.51 71.24 0.75 0.00 16 2 C 0.18 4.64 6.30 88.34 0.56 5.19 16 3 N -0.50 -15.30 11.29 -291.98 -3.30 -18.60 16 4 C 0.00 -0.04 5.06 41.26 0.21 0.17 16 5 C -0.06 -1.80 9.89 71.24 0.70 -1.10 16 6 C -0.03 -1.08 3.75 24.79 0.09 -0.98 16 7 C 0.13 4.68 4.51 85.56 0.39 5.06 16 8 N -0.52 -21.61 4.17 -875.83 -3.66 -25.27 16 9 C 0.21 10.80 4.68 85.56 0.40 11.20 16 10 C -0.51 -28.42 8.39 25.60 0.21 -28.20 16 11 H 0.06 3.23 7.70 -2.91 -0.02 3.21 16 12 C 0.01 0.38 5.46 84.66 0.46 0.84 16 13 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 14 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 15 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 16 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 17 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 18 C 0.09 3.37 2.68 45.64 0.12 3.49 16 19 C -0.16 -5.54 5.79 31.69 0.18 -5.35 16 20 C -0.10 -2.85 6.91 31.91 0.22 -2.63 16 21 C -0.14 -3.81 6.23 31.67 0.20 -3.61 16 22 C -0.12 -4.20 5.68 31.32 0.18 -4.02 16 23 O -0.20 -5.89 8.74 -3.82 -0.03 -5.92 16 24 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 25 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 2.25 7.40 -2.39 -0.02 2.23 16 28 H 0.07 2.31 7.89 -2.39 -0.02 2.29 16 29 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.06 2.04 5.50 -2.39 -0.01 2.03 16 31 H 0.10 3.39 7.93 -2.39 -0.02 3.37 16 32 H -0.03 -1.79 8.02 -2.39 -0.02 -1.81 16 33 H 0.01 0.70 7.85 -2.39 -0.02 0.68 16 34 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 35 H 0.06 2.64 7.06 -2.39 -0.02 2.63 16 36 H 0.08 2.65 4.02 -2.38 -0.01 2.64 16 37 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 40 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.08 2.11 2.63 -2.38 -0.01 2.11 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 2.67 3.85 -2.39 -0.01 2.66 16 Total: -1.00 -64.17 325.62 1.01 -63.17 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.00 Total: 15.13 kcal Atomic # 6 Polarization: -24.62 SS G_CDS: 4.68 Total: -19.95 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -6.67 Total: -98.59 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.03 Total: -5.92 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -64.17 1.01 -63.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236592037.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.302 kcal (2) G-P(sol) polarization free energy of solvation -64.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds