Wall clock time and date at job start Tue Mar 31 2020 00:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47006 * 246.34931 * 3 2 1 5 5 C 1.52994 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84729 * 43.80692 * 11 10 9 13 13 C 1.53782 * 113.61653 * 174.99994 * 11 10 9 14 14 C 1.53780 * 87.07872 * 139.98291 * 13 11 10 15 15 H 1.09011 * 113.61353 * 89.11949 * 14 13 11 16 16 N 1.46498 * 113.61476 * 220.01920 * 14 13 11 17 17 C 1.36939 * 120.00080 * 205.00609 * 16 14 13 18 18 H 1.07998 * 120.00015 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00235 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99675 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00321 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47087 * 59.99613 * 21 19 17 23 23 H 1.48496 * 109.47117 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47108 * 300.00058 * 21 19 17 25 25 C 1.53774 * 87.08411 * 334.56798 * 14 13 11 26 26 H 4.44649 * 5.63401 * 179.97438 * 4 1 2 27 27 H 1.08990 * 109.47006 * 126.34707 * 3 2 1 28 28 H 1.09002 * 109.46645 * 6.34508 * 3 2 1 29 29 H 1.08998 * 109.47269 * 60.00305 * 4 3 2 30 30 H 1.09003 * 109.46642 * 299.99632 * 4 3 2 31 31 H 1.09004 * 109.47131 * 59.99670 * 5 4 3 32 32 H 1.09000 * 109.47504 * 299.99974 * 5 4 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 6 5 4 34 34 H 1.08994 * 109.47405 * 299.99855 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 37 37 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 38 38 H 1.08997 * 113.61383 * 254.53330 * 13 11 10 39 39 H 1.08997 * 113.61199 * 25.35148 * 13 11 10 40 40 H 0.96999 * 120.00014 * 25.00321 * 16 14 13 41 41 H 0.96999 * 119.99689 * 180.02562 * 20 19 17 42 42 H 1.08998 * 113.61544 * 270.88323 * 25 14 13 43 43 H 1.09004 * 113.61702 * 139.97454 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5796 1.3214 5 6 4.6857 0.5808 1.3211 6 6 5.1955 1.1603 2.6421 7 6 6.7025 1.1610 2.6421 8 8 7.3092 0.7399 1.6800 9 7 7.3762 1.6351 3.7088 10 6 8.8412 1.6414 3.7063 11 6 9.3510 2.2254 5.0253 12 1 8.8117 1.8453 5.8930 13 6 10.8803 2.1650 5.1756 14 6 10.7953 3.5673 5.8012 15 1 10.6509 3.5554 6.8816 16 7 11.8744 4.4641 5.3800 17 6 12.2476 5.5100 6.1814 18 1 11.7461 5.6739 7.1237 19 6 13.2697 6.3601 5.7820 20 7 13.8805 6.1606 4.6333 21 14 13.7782 7.7872 6.8749 22 1 14.2370 7.2663 8.1876 23 1 14.8828 8.5382 6.2261 24 1 12.6184 8.6919 7.0793 25 6 9.4919 3.7566 5.0075 26 1 -1.0500 0.0001 -0.0002 27 1 3.0091 0.6098 -0.8277 28 1 3.0098 -1.0206 -0.1136 29 1 2.7928 -0.0297 2.1491 30 1 2.7920 1.6008 1.4349 31 1 5.0484 1.1903 0.4933 32 1 5.0500 -0.4402 1.2072 33 1 4.8328 0.5511 3.4701 34 1 4.8314 2.1813 2.7556 35 1 6.8911 1.9722 4.4782 36 1 9.2087 0.6213 3.5949 37 1 9.2005 2.2496 2.8762 38 1 11.2208 1.3970 5.8700 39 1 11.4118 2.1413 4.2243 40 1 12.3246 4.3171 4.5335 41 1 14.5950 6.7545 4.3545 42 1 9.6440 4.1695 4.0103 43 1 8.7115 4.2734 5.5663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263831668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:29 Heat of formation + Delta-G solvation = 18.865273 kcal Electronic energy + Delta-G solvation = -20070.364574 eV Core-core repulsion = 16923.971476 eV Total energy + Delta-G solvation = -3146.393098 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.88197 -38.50043 -36.46352 -34.66945 -33.48767 -33.25935 -30.59656 -30.02154 -27.50187 -25.18040 -25.06030 -23.74591 -21.70744 -21.02881 -20.40257 -19.04792 -18.38842 -17.14849 -16.90317 -16.37856 -16.06944 -15.31770 -14.85507 -14.74642 -14.56259 -14.05170 -13.88863 -13.58540 -13.14364 -13.07307 -12.89428 -12.13458 -12.01258 -11.87819 -11.78175 -11.57949 -11.39177 -11.23505 -11.00143 -10.82965 -10.55407 -10.53403 -10.43368 -10.25158 -10.16850 -9.83213 -9.80504 -9.47495 -9.01248 -8.86867 -6.97034 -5.78736 -3.07729 2.45977 2.50159 2.61260 3.17083 3.42649 3.47074 3.48318 4.00006 4.52630 4.57776 4.60302 4.61034 4.94917 4.96106 4.98864 5.02999 5.17328 5.23088 5.35102 5.41082 5.45514 5.46287 5.51265 5.63741 5.69718 5.82417 5.85561 5.90840 5.94054 6.03545 6.08691 6.26134 6.31409 6.35835 6.46720 6.58813 6.82451 7.10752 7.27466 7.48116 7.67780 8.20254 8.39801 9.50702 10.09113 10.43297 11.43530 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.002082 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.342595 B =13444.496387 C =13694.347267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.184 4.184 3 C -0.016 4.016 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.141 4.141 7 C 0.507 3.493 8 O -0.545 6.545 9 N -0.727 5.727 10 C 0.131 3.869 11 C -0.127 4.127 12 H 0.087 0.913 13 C -0.143 4.143 14 C 0.165 3.835 15 H 0.075 0.925 16 N -0.713 5.713 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.161 4.161 26 H 0.216 0.784 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.400 0.600 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.954 -12.951 -4.044 26.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.184 4.184 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.422 6.422 9 N -0.378 5.378 10 C 0.008 3.992 11 C -0.146 4.146 12 H 0.106 0.894 13 C -0.182 4.182 14 C 0.053 3.947 15 H 0.093 0.907 16 N -0.350 5.350 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.580 5.580 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.202 4.202 26 H 0.233 0.767 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.234 0.766 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.219 0.781 41 H 0.066 0.934 42 H 0.096 0.904 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.401 -13.088 -4.606 26.350 hybrid contribution -0.038 0.968 0.682 1.185 sum -22.439 -12.120 -3.924 25.803 Atomic orbital electron populations 1.24921 0.96012 1.01447 1.01031 1.23243 0.94678 1.00154 1.00308 1.18780 0.84472 1.02785 0.99186 1.21565 0.95399 1.01651 0.96592 1.21346 0.93796 1.02532 0.96626 1.21677 0.92143 1.03745 1.00547 1.20720 0.90200 0.77248 0.82477 1.90708 1.70590 1.46798 1.34136 1.46107 1.08010 1.64237 1.19466 1.21428 0.78563 1.01007 0.98220 1.22636 0.97731 0.98232 0.96028 0.89430 1.23449 0.93280 0.99819 1.01698 1.21522 0.88199 0.88628 0.96319 0.90683 1.42404 1.38747 1.30632 1.23267 1.19264 1.13850 1.03907 1.00689 0.91150 1.24773 0.99009 0.99708 0.97394 1.69654 1.26851 1.40091 1.21399 0.86259 0.77864 0.82328 0.79666 1.21231 1.21673 1.21267 1.23945 1.01226 0.92714 1.02279 0.76746 0.89344 0.89396 0.91490 0.91429 0.90827 0.90905 0.88985 0.88846 0.76626 0.91875 0.91292 0.92032 0.90120 0.78059 0.93393 0.90377 0.92814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.60 19.25 29.55 0.57 -1.03 16 2 C -0.18 -1.51 13.34 -37.12 -0.50 -2.01 16 3 C -0.02 -0.10 5.70 -29.51 -0.17 -0.27 16 4 C -0.11 -0.71 5.17 -26.73 -0.14 -0.85 16 5 C -0.11 -0.80 4.50 -26.74 -0.12 -0.92 16 6 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 7 C 0.51 5.90 7.83 -10.98 -0.09 5.81 16 8 O -0.54 -8.67 15.98 5.55 0.09 -8.58 16 9 N -0.73 -7.79 5.56 -60.29 -0.33 -8.13 16 10 C 0.13 1.70 5.51 -4.04 -0.02 1.68 16 11 C -0.13 -1.66 3.75 -89.81 -0.34 -2.00 16 12 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 13 C -0.14 -2.25 7.39 -25.92 -0.19 -2.45 16 14 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 15 H 0.08 1.42 8.10 -51.92 -0.42 1.00 16 16 N -0.71 -17.75 5.40 -52.64 -0.28 -18.03 16 17 C -0.25 -6.79 9.97 -15.06 -0.15 -6.94 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 21 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C -0.16 -2.61 7.43 -25.92 -0.19 -2.81 16 26 H 0.22 0.88 7.80 -54.09 -0.42 0.46 16 27 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.65 8.10 -51.93 -0.42 0.22 16 32 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.40 3.21 8.47 -40.82 -0.35 2.87 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.04 7.85 -51.93 -0.41 0.63 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.35 8.08 -51.93 -0.42 0.93 16 40 H 0.39 10.24 7.93 -40.82 -0.32 9.92 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.08 1.42 7.90 -51.93 -0.41 1.01 16 43 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -33.07 366.29 -8.56 -41.63 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -7.36 Total: 8.36 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.89 Total: -10.58 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: 0.11 Total: -53.58 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.07 -8.56 -41.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263831668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.500 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds