Wall clock time and date at job start Tue Mar 31 2020 00:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47006 * 246.34931 * 3 2 1 5 5 C 1.52994 * 109.46834 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47118 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84729 * 43.80692 * 11 10 9 13 13 C 1.53782 * 113.61653 * 174.99994 * 11 10 9 14 14 C 1.53780 * 87.07872 * 139.98291 * 13 11 10 15 15 H 1.09011 * 113.61353 * 89.11949 * 14 13 11 16 16 N 1.46498 * 113.61476 * 220.01920 * 14 13 11 17 17 C 1.36939 * 120.00080 * 205.00609 * 16 14 13 18 18 H 1.07998 * 120.00015 * 359.97438 * 17 16 14 19 19 C 1.38813 * 120.00235 * 180.02562 * 17 16 14 20 20 N 1.31623 * 119.99675 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00321 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47087 * 59.99613 * 21 19 17 23 23 H 1.48496 * 109.47117 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47108 * 300.00058 * 21 19 17 25 25 C 1.53774 * 87.08411 * 334.56798 * 14 13 11 26 26 H 4.44649 * 5.63401 * 179.97438 * 4 1 2 27 27 H 1.08990 * 109.47006 * 126.34707 * 3 2 1 28 28 H 1.09002 * 109.46645 * 6.34508 * 3 2 1 29 29 H 1.08998 * 109.47269 * 60.00305 * 4 3 2 30 30 H 1.09003 * 109.46642 * 299.99632 * 4 3 2 31 31 H 1.09004 * 109.47131 * 59.99670 * 5 4 3 32 32 H 1.09000 * 109.47504 * 299.99974 * 5 4 3 33 33 H 1.09004 * 109.47066 * 60.00025 * 6 5 4 34 34 H 1.08994 * 109.47405 * 299.99855 * 6 5 4 35 35 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 36 36 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 37 37 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 38 38 H 1.08997 * 113.61383 * 254.53330 * 13 11 10 39 39 H 1.08997 * 113.61199 * 25.35148 * 13 11 10 40 40 H 0.96999 * 120.00014 * 25.00321 * 16 14 13 41 41 H 0.96999 * 119.99689 * 180.02562 * 20 19 17 42 42 H 1.08998 * 113.61544 * 270.88323 * 25 14 13 43 43 H 1.09004 * 113.61702 * 139.97454 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1558 0.5796 1.3214 5 6 4.6857 0.5808 1.3211 6 6 5.1955 1.1603 2.6421 7 6 6.7025 1.1610 2.6421 8 8 7.3092 0.7399 1.6800 9 7 7.3762 1.6351 3.7088 10 6 8.8412 1.6414 3.7063 11 6 9.3510 2.2254 5.0253 12 1 8.8117 1.8453 5.8930 13 6 10.8803 2.1650 5.1756 14 6 10.7953 3.5673 5.8012 15 1 10.6509 3.5554 6.8816 16 7 11.8744 4.4641 5.3800 17 6 12.2476 5.5100 6.1814 18 1 11.7461 5.6739 7.1237 19 6 13.2697 6.3601 5.7820 20 7 13.8805 6.1606 4.6333 21 14 13.7782 7.7872 6.8749 22 1 14.2370 7.2663 8.1876 23 1 14.8828 8.5382 6.2261 24 1 12.6184 8.6919 7.0793 25 6 9.4919 3.7566 5.0075 26 1 -1.0500 0.0001 -0.0002 27 1 3.0091 0.6098 -0.8277 28 1 3.0098 -1.0206 -0.1136 29 1 2.7928 -0.0297 2.1491 30 1 2.7920 1.6008 1.4349 31 1 5.0484 1.1903 0.4933 32 1 5.0500 -0.4402 1.2072 33 1 4.8328 0.5511 3.4701 34 1 4.8314 2.1813 2.7556 35 1 6.8911 1.9722 4.4782 36 1 9.2087 0.6213 3.5949 37 1 9.2005 2.2496 2.8762 38 1 11.2208 1.3970 5.8700 39 1 11.4118 2.1413 4.2243 40 1 12.3246 4.3171 4.5335 41 1 14.5950 6.7545 4.3545 42 1 9.6440 4.1695 4.0103 43 1 8.7115 4.2734 5.5663 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263831668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:29 Heat of formation + Delta-G solvation = -2.108695 kcal Electronic energy + Delta-G solvation = -20071.274074 eV Core-core repulsion = 16923.971476 eV Total energy + Delta-G solvation = -3147.302598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88508 -39.79356 -37.04465 -36.00426 -34.96697 -34.06931 -32.21884 -30.93530 -28.66454 -26.44965 -26.19039 -25.33854 -22.56807 -22.15505 -21.34114 -20.41000 -19.05134 -18.88486 -17.89559 -17.18363 -17.03170 -16.55284 -16.24926 -15.89200 -15.49309 -15.12789 -15.07267 -14.78642 -14.58284 -13.95797 -13.77351 -13.40690 -13.23270 -13.01888 -12.90249 -12.68912 -12.62397 -12.50552 -12.23820 -12.15646 -12.07566 -11.57872 -11.57162 -11.54302 -11.13634 -11.07469 -10.96058 -10.82781 -10.69196 -10.01744 -8.97226 -7.93925 -5.22450 1.47683 1.50778 1.56932 1.71746 1.89665 1.94239 2.30209 2.57505 3.37760 3.50603 3.70982 3.77110 3.84918 3.93824 4.06413 4.07491 4.26668 4.36062 4.43329 4.45425 4.46232 4.57603 4.66349 4.76695 4.81549 4.89822 4.93718 4.98702 5.00174 5.07257 5.12488 5.23064 5.23690 5.36169 5.38569 5.44589 5.49877 5.55702 5.74929 6.28096 6.64738 6.73486 7.33502 7.34489 8.12167 8.33827 9.29367 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.037709 B = 0.002082 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.342595 B =13444.496387 C =13694.347267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.103 4.103 5 C -0.102 4.102 6 C -0.132 4.132 7 C 0.502 3.498 8 O -0.595 6.595 9 N -0.717 5.717 10 C 0.137 3.863 11 C -0.094 4.094 12 H 0.123 0.877 13 C -0.138 4.138 14 C 0.142 3.858 15 H 0.082 0.918 16 N -0.731 5.731 17 C -0.245 4.245 18 H 0.080 0.920 19 C -0.080 4.080 20 N -0.972 5.972 21 Si 0.975 3.025 22 H -0.276 1.276 23 H -0.298 1.298 24 H -0.277 1.277 25 C -0.152 4.152 26 H 0.241 0.759 27 H 0.089 0.911 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.114 0.886 35 H 0.417 0.583 36 H 0.062 0.938 37 H 0.042 0.958 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.053 0.947 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.479 -13.451 -2.167 28.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.216 4.216 3 C -0.056 4.056 4 C -0.141 4.141 5 C -0.140 4.140 6 C -0.172 4.172 7 C 0.290 3.710 8 O -0.476 6.476 9 N -0.369 5.369 10 C 0.013 3.987 11 C -0.113 4.113 12 H 0.141 0.859 13 C -0.178 4.178 14 C 0.033 3.967 15 H 0.100 0.900 16 N -0.368 5.368 17 C -0.377 4.377 18 H 0.098 0.902 19 C -0.272 4.272 20 N -0.623 5.623 21 Si 0.803 3.197 22 H -0.202 1.202 23 H -0.225 1.225 24 H -0.204 1.204 25 C -0.193 4.193 26 H 0.257 0.743 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.254 0.746 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -25.001 -13.609 -2.667 28.589 hybrid contribution 0.671 1.055 0.093 1.254 sum -24.329 -12.554 -2.574 27.498 Atomic orbital electron populations 1.25696 0.96968 1.00567 1.00120 1.23735 0.95554 1.01056 1.01236 1.18836 0.84039 1.03136 0.99545 1.21456 0.94015 1.01997 0.96622 1.21285 0.94767 1.01557 0.96396 1.21718 0.88613 1.05582 1.01260 1.21509 0.91920 0.75966 0.81593 1.90693 1.71900 1.48989 1.35969 1.45987 1.06984 1.63829 1.20082 1.21174 0.80174 1.00291 0.97102 1.22462 0.95978 0.95489 0.97329 0.85890 1.23336 0.95483 0.98017 1.00963 1.21978 0.87939 0.89627 0.97197 0.90012 1.42633 1.40273 1.31297 1.22584 1.19721 1.13040 1.04036 1.00876 0.90225 1.25612 0.99814 1.02785 0.98948 1.69826 1.27735 1.41312 1.23430 0.85193 0.77265 0.79177 0.78020 1.20211 1.22463 1.20357 1.23711 0.99777 0.95368 1.00453 0.74259 0.89311 0.89021 0.90641 0.91038 0.92533 0.92012 0.86100 0.86741 0.74611 0.92010 0.93990 0.90332 0.91708 0.79721 0.94140 0.92828 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.86 19.25 74.32 1.43 -1.43 16 2 C -0.22 -3.32 13.34 31.13 0.42 -2.91 16 3 C -0.02 -0.24 5.70 28.79 0.16 -0.07 16 4 C -0.10 -1.11 5.17 30.59 0.16 -0.95 16 5 C -0.10 -1.44 4.50 30.59 0.14 -1.30 16 6 C -0.13 -1.62 5.70 29.85 0.17 -1.45 16 7 C 0.50 10.93 7.83 87.66 0.69 11.62 16 8 O -0.59 -18.98 15.98 -3.04 -0.05 -19.03 16 9 N -0.72 -13.68 5.56 -463.06 -2.57 -16.26 16 10 C 0.14 3.37 5.51 86.38 0.48 3.85 16 11 C -0.09 -2.21 3.75 -10.27 -0.04 -2.25 16 12 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 13 C -0.14 -4.20 7.39 31.12 0.23 -3.97 16 14 C 0.14 5.31 4.48 45.52 0.20 5.51 16 15 H 0.08 2.94 8.10 -2.38 -0.02 2.92 16 16 N -0.73 -36.84 5.40 -320.45 -1.73 -38.57 16 17 C -0.24 -13.55 9.97 84.03 0.84 -12.71 16 18 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.13 16 20 N -0.97 -60.28 13.06 21.65 0.28 -59.99 16 21 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 25 C -0.15 -4.75 7.43 31.12 0.23 -4.52 16 26 H 0.24 1.43 7.80 -4.42 -0.03 1.40 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.99 8.10 -2.38 -0.02 0.97 16 32 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 33 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.42 5.12 8.47 -92.71 -0.79 4.34 16 36 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.04 1.28 7.85 -2.39 -0.02 1.26 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.06 2.19 8.08 -2.39 -0.02 2.17 16 40 H 0.37 20.43 7.93 -92.71 -0.73 19.69 16 41 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 43 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -73.64 366.29 2.99 -70.65 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.54 Total: 29.83 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 5.57 Total: -14.72 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.02 Total: -114.82 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -73.64 2.99 -70.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263831668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.541 kcal (2) G-P(sol) polarization free energy of solvation -73.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds