Wall clock time and date at job start Tue Mar 31 2020 00:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00198 * 2 1 4 4 C 1.52999 * 109.47200 * 125.00495 * 3 2 1 5 5 C 1.50701 * 112.84729 * 298.31226 * 4 3 2 6 6 O 1.21284 * 120.00098 * 124.53900 * 5 4 3 7 7 N 1.34776 * 120.00062 * 304.54131 * 5 4 3 8 8 C 1.46505 * 119.99884 * 175.03411 * 7 5 4 9 9 H 1.08998 * 110.88427 * 328.88257 * 8 7 5 10 10 C 1.55148 * 111.00394 * 204.99803 * 8 7 5 11 11 C 1.54323 * 102.94623 * 277.43265 * 10 8 7 12 12 N 1.47024 * 107.26981 * 337.80451 * 11 10 8 13 13 C 1.36932 * 125.64976 * 178.98228 * 12 11 10 14 14 H 1.07996 * 120.00215 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99825 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00381 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99905 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47094 * 119.99719 * 17 15 13 20 20 H 1.48494 * 109.46944 * 239.99717 * 17 15 13 21 21 C 1.47419 * 108.70128 * 358.94360 * 12 11 10 22 22 C 1.53775 * 113.61417 * 69.50719 * 4 3 2 23 23 C 1.53956 * 87.01965 * 89.23292 * 22 4 3 24 24 C 1.53774 * 113.61540 * 167.11572 * 4 3 2 25 25 H 1.07996 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99305 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47068 * 4.99939 * 3 2 1 29 29 H 1.09006 * 109.46848 * 245.00455 * 3 2 1 30 30 H 0.96994 * 120.00151 * 354.76084 * 7 5 4 31 31 H 1.09005 * 110.72358 * 35.79254 * 10 8 7 32 32 H 1.09003 * 110.72425 * 159.06558 * 10 8 7 33 33 H 1.09001 * 109.88529 * 97.22444 * 11 10 8 34 34 H 1.09006 * 109.88486 * 218.23636 * 11 10 8 35 35 H 0.97004 * 120.00455 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.37002 * 265.28370 * 21 12 11 37 37 H 1.09003 * 110.37190 * 142.96361 * 21 12 11 38 38 H 1.09009 * 113.61324 * 203.74974 * 22 4 3 39 39 H 1.08997 * 113.61782 * 334.65209 * 22 4 3 40 40 H 1.09004 * 113.53598 * 270.81025 * 23 22 4 41 41 H 1.09001 * 113.66763 * 139.93461 * 23 22 4 42 42 H 1.08999 * 113.61631 * 25.34867 * 24 4 3 43 43 H 1.08997 * 113.61664 * 156.24961 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 2.3380 1.2437 2.5146 6 8 2.6421 0.3716 3.3007 7 7 1.3766 2.1329 2.8333 8 6 0.6237 1.9820 4.0810 9 1 0.5272 0.9306 4.3518 10 6 -0.7681 2.6594 3.9760 11 6 -0.4553 4.1405 4.2761 12 7 0.8087 4.1763 5.0260 13 6 1.4437 5.3069 5.4663 14 1 2.3724 5.2270 6.0117 15 6 0.8936 6.5556 5.2115 16 7 -0.2379 6.6531 4.5464 17 14 1.7595 8.0979 5.8127 18 1 3.0039 7.7195 6.5294 19 1 2.0989 8.9595 4.6518 20 1 0.8638 8.8406 6.7353 21 6 1.2789 2.7936 5.2263 22 6 4.2117 0.3537 1.0348 23 6 4.9652 1.4916 0.3223 24 6 4.0693 2.4683 1.1020 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9315 30 1 1.1859 2.8749 2.2385 31 1 -1.1768 2.5474 2.9716 32 1 -1.4527 2.2514 4.7197 33 1 -0.3485 4.6933 3.3427 34 1 -1.2564 4.5747 4.8743 35 1 -0.6221 7.5258 4.3680 36 1 0.9491 2.4172 6.1947 37 1 2.3653 2.7475 5.1506 38 1 4.6585 0.0624 1.9855 39 1 3.9935 -0.4975 0.3900 40 1 4.8017 1.5142 -0.7551 41 1 6.0193 1.5550 0.5928 42 1 3.7362 3.3217 0.5114 43 1 4.4770 2.7562 2.0710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265301049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:06 Heat of formation + Delta-G solvation = 22.181185 kcal Electronic energy + Delta-G solvation = -22728.358320 eV Core-core repulsion = 19582.109010 eV Total energy + Delta-G solvation = -3146.249310 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.56888 -38.23116 -36.74338 -34.40355 -33.59430 -31.74948 -29.27240 -28.46849 -27.12784 -25.68970 -24.90905 -24.20527 -21.24759 -20.12357 -19.99828 -19.75709 -18.43252 -17.24639 -16.71269 -15.93200 -15.46362 -14.80410 -14.65887 -14.43648 -14.23757 -13.83586 -13.71487 -13.27846 -12.90064 -12.42207 -12.28509 -12.03782 -11.88154 -11.81393 -11.78365 -11.15873 -11.06918 -10.95107 -10.90271 -10.68095 -10.55726 -10.34177 -10.23005 -10.10342 -9.92754 -9.67170 -9.43949 -9.14422 -8.69603 -8.46167 -6.81127 -5.72095 -3.04276 2.24470 3.00468 3.38834 3.45292 3.47255 3.60902 4.37771 4.50123 4.52029 4.73615 4.75344 5.02952 5.09340 5.20322 5.34796 5.42850 5.47152 5.48551 5.54150 5.68545 5.80250 5.80841 5.84873 5.85596 5.86741 5.89874 6.03694 6.14634 6.24713 6.37716 6.41049 6.51711 6.58405 6.59392 6.71935 6.72839 7.12835 7.54274 7.56811 7.79978 8.00551 8.25007 8.65657 9.22393 9.82414 10.48573 11.39953 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.005214 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.317454 B = 5368.915721 C = 5931.479557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.153 4.153 3 C -0.066 4.066 4 C -0.102 4.102 5 C 0.532 3.468 6 O -0.551 6.551 7 N -0.700 5.700 8 C 0.129 3.871 9 H 0.086 0.914 10 C -0.153 4.153 11 C 0.177 3.823 12 N -0.603 5.603 13 C -0.222 4.222 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.924 5.924 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C 0.125 3.875 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.123 4.123 25 H 0.097 0.903 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.401 0.599 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.043 0.957 35 H 0.251 0.749 36 H 0.026 0.974 37 H 0.041 0.959 38 H 0.092 0.908 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -11.291 -11.314 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.171 4.171 3 C -0.103 4.103 4 C -0.106 4.106 5 C 0.318 3.682 6 O -0.429 6.429 7 N -0.349 5.349 8 C 0.024 3.976 9 H 0.104 0.896 10 C -0.192 4.192 11 C 0.052 3.948 12 N -0.330 5.330 13 C -0.350 4.350 14 H 0.094 0.906 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.741 3.259 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.218 1.218 21 C -0.002 4.002 22 C -0.149 4.149 23 C -0.179 4.179 24 C -0.161 4.161 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.126 0.874 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.235 0.765 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.043 0.957 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.095 0.905 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.812 -11.686 -10.739 16.322 hybrid contribution 0.180 1.304 0.148 1.325 sum 3.992 -10.381 -10.591 15.358 Atomic orbital electron populations 1.23839 0.95891 1.01875 1.00816 1.22836 0.95967 0.98242 1.00100 1.20517 0.97139 0.96124 0.96525 1.22104 0.94918 1.00302 0.93237 1.20185 0.79138 0.81101 0.87808 1.90638 1.64136 1.36527 1.51636 1.45794 1.36933 1.28940 1.23235 1.22091 0.91685 0.99125 0.84729 0.89555 1.23211 0.95074 0.99860 1.01061 1.21149 0.88617 0.88567 0.96473 1.44472 1.23654 0.99874 1.64987 1.19100 1.03706 0.83331 1.28905 0.90556 1.24765 0.97519 0.97403 1.00844 1.69960 1.19565 1.22491 1.45193 0.86066 0.78582 0.83369 0.77906 1.20570 1.21825 1.21801 1.21935 0.97349 0.86346 0.94557 1.22853 0.94424 0.96100 1.01494 1.22873 0.99081 0.96546 0.99373 1.22928 0.95486 0.96017 1.01623 0.88448 0.88660 0.87421 0.90676 0.89958 0.76465 0.91702 0.91112 0.93700 0.93869 0.93895 0.95675 0.94021 0.88932 0.91200 0.90083 0.91166 0.90518 0.89367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.99 14.32 29.02 0.42 -1.57 16 2 C -0.15 -1.67 8.66 -36.03 -0.31 -1.98 16 3 C -0.07 -0.69 4.93 -27.88 -0.14 -0.83 16 4 C -0.10 -1.29 0.79 -154.85 -0.12 -1.41 16 5 C 0.53 8.75 6.31 -10.99 -0.07 8.68 16 6 O -0.55 -10.89 15.65 5.55 0.09 -10.80 16 7 N -0.70 -11.71 5.09 -51.73 -0.26 -11.97 16 8 C 0.13 2.37 3.39 -65.78 -0.22 2.14 16 9 H 0.09 1.56 7.61 -51.93 -0.40 1.17 16 10 C -0.15 -2.75 6.55 -24.90 -0.16 -2.91 16 11 C 0.18 4.12 5.36 -3.06 -0.02 4.11 16 12 N -0.60 -15.19 3.39 -170.07 -0.58 -15.77 16 13 C -0.22 -6.17 10.28 -15.06 -0.15 -6.33 16 14 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 15 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -26.66 10.31 55.49 0.57 -26.08 16 17 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 C 0.13 2.72 6.93 -2.53 -0.02 2.71 16 22 C -0.11 -1.29 6.82 -25.83 -0.18 -1.46 16 23 C -0.14 -1.38 7.74 -25.83 -0.20 -1.58 16 24 C -0.12 -1.46 7.22 -25.93 -0.19 -1.65 16 25 H 0.10 1.01 7.84 -52.49 -0.41 0.60 16 26 H 0.10 0.92 8.06 -52.49 -0.42 0.49 16 27 H 0.11 1.14 7.51 -52.48 -0.39 0.74 16 28 H 0.07 0.80 7.35 -51.93 -0.38 0.41 16 29 H 0.08 0.73 7.31 -51.93 -0.38 0.35 16 30 H 0.40 6.50 8.21 -40.82 -0.34 6.16 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.04 1.13 7.38 -51.93 -0.38 0.75 16 34 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 35 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.09 1.24 7.53 -51.92 -0.39 0.85 16 39 H 0.07 0.72 7.36 -51.93 -0.38 0.34 16 40 H 0.08 0.67 7.60 -51.93 -0.39 0.27 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 43 H 0.09 1.20 8.09 -51.93 -0.42 0.78 16 LS Contribution 344.41 15.07 5.19 5.19 Total: -1.00 -31.12 344.41 -8.64 -39.75 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.16 Total: 5.08 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.46 Total: -2.45 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -0.27 Total: -53.83 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.12 -8.64 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265301049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.934 kcal (2) G-P(sol) polarization free energy of solvation -31.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds