Wall clock time and date at job start Tue Mar 31 2020 00:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 120.00198 * 2 1 4 4 C 1.52999 * 109.47200 * 125.00495 * 3 2 1 5 5 C 1.50701 * 112.84729 * 298.31226 * 4 3 2 6 6 O 1.21284 * 120.00098 * 124.53900 * 5 4 3 7 7 N 1.34776 * 120.00062 * 304.54131 * 5 4 3 8 8 C 1.46505 * 119.99884 * 175.03411 * 7 5 4 9 9 H 1.08998 * 110.88427 * 328.88257 * 8 7 5 10 10 C 1.55148 * 111.00394 * 204.99803 * 8 7 5 11 11 C 1.54323 * 102.94623 * 277.43265 * 10 8 7 12 12 N 1.47024 * 107.26981 * 337.80451 * 11 10 8 13 13 C 1.36932 * 125.64976 * 178.98228 * 12 11 10 14 14 H 1.07996 * 120.00215 * 179.97438 * 13 12 11 15 15 C 1.38812 * 119.99825 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00381 * 359.97438 * 15 13 12 17 17 Si 1.86809 * 119.99905 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47057 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47094 * 119.99719 * 17 15 13 20 20 H 1.48494 * 109.46944 * 239.99717 * 17 15 13 21 21 C 1.47419 * 108.70128 * 358.94360 * 12 11 10 22 22 C 1.53775 * 113.61417 * 69.50719 * 4 3 2 23 23 C 1.53956 * 87.01965 * 89.23292 * 22 4 3 24 24 C 1.53774 * 113.61540 * 167.11572 * 4 3 2 25 25 H 1.07996 * 119.99914 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00350 * 180.02562 * 1 2 3 27 27 H 1.08004 * 119.99305 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.47068 * 4.99939 * 3 2 1 29 29 H 1.09006 * 109.46848 * 245.00455 * 3 2 1 30 30 H 0.96994 * 120.00151 * 354.76084 * 7 5 4 31 31 H 1.09005 * 110.72358 * 35.79254 * 10 8 7 32 32 H 1.09003 * 110.72425 * 159.06558 * 10 8 7 33 33 H 1.09001 * 109.88529 * 97.22444 * 11 10 8 34 34 H 1.09006 * 109.88486 * 218.23636 * 11 10 8 35 35 H 0.97004 * 120.00455 * 180.02562 * 16 15 13 36 36 H 1.09002 * 110.37002 * 265.28370 * 21 12 11 37 37 H 1.09003 * 110.37190 * 142.96361 * 21 12 11 38 38 H 1.09009 * 113.61324 * 203.74974 * 22 4 3 39 39 H 1.08997 * 113.61782 * 334.65209 * 22 4 3 40 40 H 1.09004 * 113.53598 * 270.81025 * 23 22 4 41 41 H 1.09001 * 113.66763 * 139.93461 * 23 22 4 42 42 H 1.08999 * 113.61631 * 25.34867 * 24 4 3 43 43 H 1.08997 * 113.61664 * 156.24961 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1815 5 6 2.3380 1.2437 2.5146 6 8 2.6421 0.3716 3.3007 7 7 1.3766 2.1329 2.8333 8 6 0.6237 1.9820 4.0810 9 1 0.5272 0.9306 4.3518 10 6 -0.7681 2.6594 3.9760 11 6 -0.4553 4.1405 4.2761 12 7 0.8087 4.1763 5.0260 13 6 1.4437 5.3069 5.4663 14 1 2.3724 5.2270 6.0117 15 6 0.8936 6.5556 5.2115 16 7 -0.2379 6.6531 4.5464 17 14 1.7595 8.0979 5.8127 18 1 3.0039 7.7195 6.5294 19 1 2.0989 8.9595 4.6518 20 1 0.8638 8.8406 6.7353 21 6 1.2789 2.7936 5.2263 22 6 4.2117 0.3537 1.0348 23 6 4.9652 1.4916 0.3223 24 6 4.0693 2.4683 1.1020 25 1 -0.5400 0.9353 0.0004 26 1 -0.5401 -0.9353 0.0004 27 1 1.8499 -0.9354 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4025 -0.9315 30 1 1.1859 2.8749 2.2385 31 1 -1.1768 2.5474 2.9716 32 1 -1.4527 2.2514 4.7197 33 1 -0.3485 4.6933 3.3427 34 1 -1.2564 4.5747 4.8743 35 1 -0.6221 7.5258 4.3680 36 1 0.9491 2.4172 6.1947 37 1 2.3653 2.7475 5.1506 38 1 4.6585 0.0624 1.9855 39 1 3.9935 -0.4975 0.3900 40 1 4.8017 1.5142 -0.7551 41 1 6.0193 1.5550 0.5928 42 1 3.7362 3.3217 0.5114 43 1 4.4770 2.7562 2.0710 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265301049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:06 Heat of formation + Delta-G solvation = 3.585531 kcal Electronic energy + Delta-G solvation = -22729.164688 eV Core-core repulsion = 19582.109010 eV Total energy + Delta-G solvation = -3147.055678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71577 -39.65630 -38.23387 -35.48735 -35.06748 -33.56106 -31.07051 -29.62574 -28.66132 -26.70109 -26.47574 -25.56630 -22.53605 -21.92644 -21.28985 -20.85412 -19.57055 -18.84798 -18.14544 -17.43260 -16.67327 -16.41388 -16.08413 -15.73023 -15.57693 -15.23383 -14.89506 -14.69888 -14.11204 -13.88826 -13.80827 -13.56201 -13.29133 -12.90492 -12.89743 -12.80848 -12.72775 -12.29218 -12.09356 -12.03904 -11.99984 -11.96722 -11.82487 -11.59962 -11.44357 -11.14086 -10.73409 -10.53926 -10.13955 -10.01030 -8.86816 -7.85915 -5.20014 1.43547 1.44918 1.45781 1.55813 1.70621 2.30561 2.48356 3.33060 3.44146 3.56514 3.66666 3.74465 3.86245 3.88385 4.04514 4.08660 4.25200 4.29961 4.36307 4.60427 4.66518 4.68681 4.74215 4.81450 4.87644 4.89490 4.95808 5.01592 5.02777 5.04272 5.11968 5.18588 5.24426 5.43459 5.50148 5.61515 5.68716 5.76416 5.79381 5.91552 6.19158 6.66131 7.11288 7.32409 7.76266 8.40892 9.24291 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.005214 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.317454 B = 5368.915721 C = 5931.479557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.163 4.163 3 C -0.061 4.061 4 C -0.100 4.100 5 C 0.529 3.471 6 O -0.587 6.587 7 N -0.698 5.698 8 C 0.142 3.858 9 H 0.096 0.904 10 C -0.133 4.133 11 C 0.186 3.814 12 N -0.619 5.619 13 C -0.240 4.240 14 H 0.071 0.929 15 C -0.058 4.058 16 N -0.946 5.946 17 Si 0.974 3.026 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.292 1.292 21 C 0.123 3.877 22 C -0.114 4.114 23 C -0.123 4.123 24 C -0.129 4.129 25 H 0.098 0.902 26 H 0.103 0.897 27 H 0.110 0.890 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.405 0.595 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.021 0.979 34 H 0.008 0.992 35 H 0.248 0.752 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.067 0.933 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.013 -11.827 -12.989 18.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.181 4.181 3 C -0.098 4.098 4 C -0.103 4.103 5 C 0.317 3.683 6 O -0.468 6.468 7 N -0.347 5.347 8 C 0.036 3.964 9 H 0.114 0.886 10 C -0.171 4.171 11 C 0.061 3.939 12 N -0.345 5.345 13 C -0.369 4.369 14 H 0.089 0.911 15 C -0.252 4.252 16 N -0.595 5.595 17 Si 0.803 3.197 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.219 1.219 21 C -0.003 4.003 22 C -0.151 4.151 23 C -0.160 4.160 24 C -0.167 4.167 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.128 0.872 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.240 0.760 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.027 0.973 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.176 -12.238 -12.425 17.933 hybrid contribution 0.081 1.450 0.730 1.625 sum 4.257 -10.789 -11.695 16.471 Atomic orbital electron populations 1.23976 0.95999 1.02379 1.00455 1.22936 0.96185 0.98499 1.00432 1.20541 0.96837 0.96020 0.96403 1.22223 0.95215 1.01150 0.91724 1.20943 0.78427 0.80044 0.88923 1.90617 1.65083 1.37922 1.53139 1.45807 1.37052 1.29234 1.22597 1.21891 0.91468 0.98820 0.84244 0.88608 1.23063 0.95193 0.95615 1.03239 1.20932 0.86843 0.91781 0.94323 1.44685 1.24303 1.00537 1.65000 1.19363 1.03862 0.84679 1.29017 0.91063 1.25514 0.98322 1.00035 1.01297 1.70149 1.20606 1.22761 1.45989 0.85082 0.77716 0.79651 0.77299 1.19722 1.21520 1.21893 1.22035 0.96544 0.85500 0.96268 1.22844 0.94147 0.97169 1.00970 1.22852 0.98848 0.93935 1.00380 1.22943 0.95965 0.96747 1.01020 0.88327 0.87906 0.87155 0.90693 0.87436 0.76037 0.88844 0.89409 0.96080 0.97350 0.94289 0.95469 0.95738 0.91412 0.89583 0.87378 0.90526 0.89379 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.64 14.32 67.78 0.97 -2.67 16 2 C -0.16 -3.15 8.66 25.65 0.22 -2.93 16 3 C -0.06 -1.12 4.93 29.85 0.15 -0.98 16 4 C -0.10 -2.36 0.79 -52.41 -0.04 -2.41 16 5 C 0.53 17.10 6.31 87.66 0.55 17.65 16 6 O -0.59 -23.20 15.65 -3.04 -0.05 -23.25 16 7 N -0.70 -22.85 5.09 -435.96 -2.22 -25.07 16 8 C 0.14 5.08 3.39 46.38 0.16 5.23 16 9 H 0.10 3.33 7.61 -2.39 -0.02 3.31 16 10 C -0.13 -4.56 6.55 31.78 0.21 -4.35 16 11 C 0.19 8.77 5.36 86.73 0.47 9.24 16 12 N -0.62 -31.68 3.39 -691.98 -2.35 -34.03 16 13 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 14 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 15 C -0.06 -3.29 5.49 84.86 0.47 -2.83 16 16 N -0.95 -55.47 10.31 21.65 0.22 -55.25 16 17 Si 0.97 45.75 29.55 68.60 2.03 47.78 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 C 0.12 5.40 6.93 86.86 0.60 6.00 16 22 C -0.11 -2.45 6.82 31.18 0.21 -2.24 16 23 C -0.12 -2.08 7.74 31.18 0.24 -1.84 16 24 C -0.13 -2.89 7.22 31.12 0.22 -2.67 16 25 H 0.10 1.83 7.84 -2.91 -0.02 1.81 16 26 H 0.10 1.76 8.06 -2.91 -0.02 1.74 16 27 H 0.11 2.07 7.51 -2.91 -0.02 2.05 16 28 H 0.07 1.40 7.35 -2.39 -0.02 1.38 16 29 H 0.11 1.47 7.31 -2.38 -0.02 1.45 16 30 H 0.40 12.76 8.21 -92.71 -0.76 12.00 16 31 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 32 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.02 1.08 7.38 -2.39 -0.02 1.06 16 34 H 0.01 0.44 7.50 -2.38 -0.02 0.43 16 35 H 0.25 14.10 8.31 -92.70 -0.77 13.33 16 36 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.81 7.53 -2.38 -0.02 1.79 16 39 H 0.09 1.56 7.36 -2.39 -0.02 1.55 16 40 H 0.11 1.31 7.60 -2.39 -0.02 1.29 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.76 8.10 -2.39 -0.02 1.74 16 43 H 0.06 1.71 8.09 -2.39 -0.02 1.69 16 Total: -1.00 -68.18 344.41 3.15 -65.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.22 Total: 22.30 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 5.29 Total: 2.48 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.34 Total: -114.35 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.18 3.15 -65.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265301049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.617 kcal (2) G-P(sol) polarization free energy of solvation -68.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds