Wall clock time and date at job start Tue Mar 31 2020 00:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00132 * 2 1 4 4 C 1.53001 * 109.47008 * 124.99951 * 3 2 1 5 5 C 1.50699 * 112.85158 * 297.91235 * 4 3 2 6 6 O 1.21282 * 120.00005 * 113.51330 * 5 4 3 7 7 N 1.34774 * 120.00079 * 293.52143 * 5 4 3 8 8 C 1.46502 * 120.00071 * 174.96855 * 7 5 4 9 9 H 1.08997 * 110.63664 * 36.68818 * 8 7 5 10 10 C 1.55162 * 110.71751 * 160.02185 * 8 7 5 11 11 C 1.55129 * 101.48413 * 82.69886 * 10 8 7 12 12 N 1.47421 * 104.72333 * 37.29283 * 11 10 8 13 13 C 1.36944 * 125.64717 * 155.81904 * 12 11 10 14 14 H 1.07993 * 119.99765 * 179.69058 * 13 12 11 15 15 C 1.38810 * 119.99707 * 359.41350 * 13 12 11 16 16 N 1.31625 * 120.00386 * 0.27880 * 15 13 12 17 17 Si 1.86801 * 119.99864 * 180.27692 * 15 13 12 18 18 H 1.48493 * 109.47218 * 90.00063 * 17 15 13 19 19 H 1.48502 * 109.47231 * 210.00058 * 17 15 13 20 20 H 1.48504 * 109.46905 * 330.00114 * 17 15 13 21 21 C 1.47022 * 108.70500 * 335.54893 * 12 11 10 22 22 C 1.53782 * 113.69142 * 69.18683 * 4 3 2 23 23 C 1.53773 * 87.08395 * 89.12499 * 22 4 3 24 24 C 1.53785 * 87.08480 * 25.42995 * 23 22 4 25 25 H 1.08001 * 120.00224 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00044 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99320 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46990 * 4.99427 * 3 2 1 29 29 H 1.09006 * 109.46631 * 244.99414 * 3 2 1 30 30 H 0.97004 * 120.00037 * 354.96304 * 7 5 4 31 31 H 1.08999 * 110.99845 * 200.93485 * 10 8 7 32 32 H 1.08998 * 111.00764 * 324.74801 * 10 8 7 33 33 H 1.08998 * 110.49499 * 278.44712 * 11 10 8 34 34 H 1.09000 * 110.34138 * 156.05752 * 11 10 8 35 35 H 0.96995 * 120.00233 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.87799 * 120.70181 * 21 12 11 37 37 H 1.09000 * 109.88613 * 241.71589 * 21 12 11 38 38 H 1.09001 * 113.61140 * 203.67326 * 22 4 3 39 39 H 1.09005 * 113.61240 * 334.57377 * 22 4 3 40 40 H 1.09005 * 113.61717 * 270.88298 * 23 22 4 41 41 H 1.09001 * 113.61756 * 139.98476 * 23 22 4 42 42 H 1.08991 * 113.61848 * 220.01829 * 24 23 22 43 43 H 1.08998 * 113.61282 * 89.11550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 2.3373 1.2534 2.5150 6 8 2.4865 0.2780 3.2203 7 7 1.5472 2.2659 2.9237 8 6 0.7824 2.1423 4.1670 9 1 1.3557 1.5992 4.9183 10 6 0.3635 3.5399 4.6950 11 6 -0.9105 3.8183 3.8548 12 7 -1.5789 2.5091 3.7426 13 6 -2.9149 2.3119 3.5158 14 1 -3.3082 1.3086 3.4449 15 6 -3.7645 3.4015 3.3827 16 7 -3.2851 4.6243 3.4691 17 14 -5.5883 3.1325 3.0810 18 1 -6.2988 3.0527 4.3825 19 1 -6.1314 4.2653 2.2892 20 1 -5.7843 1.8656 2.3315 21 6 -0.5724 1.4503 3.9081 22 6 4.2082 0.3487 1.0405 23 6 4.9662 1.4774 0.3221 24 6 4.0752 2.4625 1.0972 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4024 -0.9314 30 1 1.4851 3.0766 2.3945 31 1 0.1329 3.5023 5.7597 32 1 1.1349 4.2823 4.4905 33 1 -0.6420 4.1931 2.8671 34 1 -1.5555 4.5307 4.3693 35 1 -3.8788 5.3857 3.3758 36 1 -0.8345 0.8192 4.7574 37 1 -0.5161 0.8473 3.0018 38 1 4.6536 0.0609 1.9928 39 1 3.9870 -0.5052 0.4001 40 1 4.8029 1.4961 -0.7555 41 1 6.0204 1.5364 0.5925 42 1 3.7469 3.3150 0.5028 43 1 4.4843 2.7526 2.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265301050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:09 Heat of formation + Delta-G solvation = 24.371064 kcal Electronic energy + Delta-G solvation = -22766.615518 eV Core-core repulsion = 19620.461168 eV Total energy + Delta-G solvation = -3146.154349 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.61628 -38.26859 -36.76498 -34.21087 -33.71839 -31.73598 -29.25600 -28.40968 -27.10989 -25.75821 -24.91292 -24.21125 -21.25910 -20.18014 -19.88247 -19.70326 -18.49632 -17.21575 -16.75411 -15.93311 -15.54683 -14.83114 -14.69450 -14.38740 -14.11561 -13.86396 -13.61342 -13.12449 -12.98712 -12.47960 -12.36336 -12.03827 -11.90687 -11.79847 -11.59064 -11.16321 -11.07100 -11.03970 -10.88019 -10.72312 -10.55459 -10.36969 -10.27572 -10.12498 -9.87059 -9.57811 -9.35174 -9.06308 -8.68980 -8.53741 -6.82520 -5.65738 -3.06462 2.46810 2.95450 3.39772 3.45224 3.46754 3.56811 4.33535 4.45220 4.49822 4.67714 4.69180 5.06269 5.21333 5.28609 5.40659 5.43532 5.46302 5.49904 5.52911 5.65378 5.71792 5.76529 5.79154 5.86770 5.90479 5.98586 6.10115 6.15742 6.29806 6.30256 6.41043 6.51226 6.61842 6.76891 6.82521 6.93433 7.12692 7.43606 7.63008 7.81860 7.93866 8.35326 8.60427 9.22570 9.83311 10.48160 11.38279 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.004989 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.687045 B = 5611.037131 C = 6119.627936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.165 4.165 3 C -0.062 4.062 4 C -0.100 4.100 5 C 0.532 3.468 6 O -0.547 6.547 7 N -0.708 5.708 8 C 0.131 3.869 9 H 0.085 0.915 10 C -0.153 4.153 11 C 0.152 3.848 12 N -0.602 5.602 13 C -0.217 4.217 14 H 0.076 0.924 15 C -0.012 4.012 16 N -0.924 5.924 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.128 3.872 22 C -0.111 4.111 23 C -0.141 4.141 24 C -0.128 4.128 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.398 0.602 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.010 0.990 34 H 0.109 0.891 35 H 0.251 0.749 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.866 -3.063 -6.381 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.183 4.183 3 C -0.099 4.099 4 C -0.104 4.104 5 C 0.318 3.682 6 O -0.425 6.425 7 N -0.358 5.358 8 C 0.026 3.974 9 H 0.103 0.897 10 C -0.192 4.192 11 C 0.027 3.973 12 N -0.328 5.328 13 C -0.346 4.346 14 H 0.094 0.906 15 C -0.207 4.207 16 N -0.573 5.573 17 Si 0.744 3.256 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.001 3.999 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.165 4.165 25 H 0.113 0.887 26 H 0.119 0.881 27 H 0.124 0.876 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.232 0.768 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.027 0.973 34 H 0.126 0.874 35 H 0.062 0.938 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.745 -3.656 -5.900 16.297 hybrid contribution -1.127 0.203 -0.409 1.216 sum 13.618 -3.453 -6.309 15.401 Atomic orbital electron populations 1.23925 0.95865 1.02296 0.98869 1.22717 0.95889 0.97867 1.01875 1.20466 0.96940 0.96630 0.95889 1.22107 0.94859 0.99840 0.93552 1.20215 0.78356 0.82527 0.87103 1.90646 1.63436 1.32201 1.56179 1.45952 1.45362 1.18910 1.25554 1.21962 0.91920 0.98097 0.85446 0.89690 1.23365 1.00283 0.94396 1.01190 1.21989 0.89791 0.89784 0.95712 1.44493 1.03258 1.00454 1.84583 1.19085 0.81798 0.92849 1.40856 0.90606 1.24746 0.98203 0.95199 1.02527 1.69771 1.33145 0.97039 1.57394 0.86090 0.84905 0.76933 0.77709 1.21620 1.21696 1.20786 1.21683 0.87960 0.92044 0.98199 1.22813 0.94313 0.96402 1.01348 1.22834 0.98865 0.96524 0.99575 1.22975 0.95883 0.96361 1.01304 0.88671 0.88103 0.87600 0.90590 0.90167 0.76774 0.90717 0.91863 0.97257 0.87380 0.93810 0.95419 0.95506 0.89269 0.90983 0.89939 0.91230 0.90556 0.89683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.53 14.32 29.01 0.42 -2.11 16 2 C -0.17 -2.21 8.66 -36.03 -0.31 -2.52 16 3 C -0.06 -0.73 5.03 -27.88 -0.14 -0.87 16 4 C -0.10 -1.22 0.78 -154.84 -0.12 -1.35 16 5 C 0.53 8.58 6.21 -10.99 -0.07 8.51 16 6 O -0.55 -10.73 15.87 5.56 0.09 -10.65 16 7 N -0.71 -11.46 5.11 -52.03 -0.27 -11.72 16 8 C 0.13 2.41 3.29 -66.09 -0.22 2.20 16 9 H 0.09 1.57 7.63 -51.93 -0.40 1.18 16 10 C -0.15 -2.81 6.65 -24.46 -0.16 -2.97 16 11 C 0.15 3.55 5.89 -2.41 -0.01 3.53 16 12 N -0.60 -15.27 3.39 -169.94 -0.58 -15.85 16 13 C -0.22 -6.06 10.27 -15.06 -0.15 -6.21 16 14 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 15 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 16 N -0.92 -26.47 10.08 55.49 0.56 -25.91 16 17 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 2.83 6.98 -3.07 -0.02 2.81 16 22 C -0.11 -1.23 6.75 -25.92 -0.17 -1.41 16 23 C -0.14 -1.21 7.73 -25.92 -0.20 -1.41 16 24 C -0.13 -1.24 7.22 -25.91 -0.19 -1.43 16 25 H 0.09 1.32 8.06 -52.49 -0.42 0.89 16 26 H 0.10 1.60 7.84 -52.48 -0.41 1.19 16 27 H 0.11 1.34 7.49 -52.48 -0.39 0.95 16 28 H 0.08 0.95 7.79 -51.93 -0.40 0.55 16 29 H 0.08 0.77 7.31 -51.93 -0.38 0.39 16 30 H 0.40 5.90 8.62 -40.82 -0.35 5.55 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.11 2.87 5.85 -51.93 -0.30 2.56 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.03 0.63 8.05 -51.93 -0.42 0.21 16 38 H 0.09 1.11 7.73 -51.93 -0.40 0.70 16 39 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 40 H 0.08 0.62 7.60 -51.93 -0.39 0.23 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 43 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -31.03 344.96 -8.63 -39.66 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -7.16 Total: 5.89 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.46 Total: -3.65 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: -0.28 Total: -53.48 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.03 -8.63 -39.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265301050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.035 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds