Wall clock time and date at job start Tue Mar 31 2020 00:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 120.00132 * 2 1 4 4 C 1.53001 * 109.47008 * 124.99951 * 3 2 1 5 5 C 1.50699 * 112.85158 * 297.91235 * 4 3 2 6 6 O 1.21282 * 120.00005 * 113.51330 * 5 4 3 7 7 N 1.34774 * 120.00079 * 293.52143 * 5 4 3 8 8 C 1.46502 * 120.00071 * 174.96855 * 7 5 4 9 9 H 1.08997 * 110.63664 * 36.68818 * 8 7 5 10 10 C 1.55162 * 110.71751 * 160.02185 * 8 7 5 11 11 C 1.55129 * 101.48413 * 82.69886 * 10 8 7 12 12 N 1.47421 * 104.72333 * 37.29283 * 11 10 8 13 13 C 1.36944 * 125.64717 * 155.81904 * 12 11 10 14 14 H 1.07993 * 119.99765 * 179.69058 * 13 12 11 15 15 C 1.38810 * 119.99707 * 359.41350 * 13 12 11 16 16 N 1.31625 * 120.00386 * 0.27880 * 15 13 12 17 17 Si 1.86801 * 119.99864 * 180.27692 * 15 13 12 18 18 H 1.48493 * 109.47218 * 90.00063 * 17 15 13 19 19 H 1.48502 * 109.47231 * 210.00058 * 17 15 13 20 20 H 1.48504 * 109.46905 * 330.00114 * 17 15 13 21 21 C 1.47022 * 108.70500 * 335.54893 * 12 11 10 22 22 C 1.53782 * 113.69142 * 69.18683 * 4 3 2 23 23 C 1.53773 * 87.08395 * 89.12499 * 22 4 3 24 24 C 1.53785 * 87.08480 * 25.42995 * 23 22 4 25 25 H 1.08001 * 120.00224 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.00044 * 0.02562 * 1 2 3 27 27 H 1.08004 * 119.99320 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.46990 * 4.99427 * 3 2 1 29 29 H 1.09006 * 109.46631 * 244.99414 * 3 2 1 30 30 H 0.97004 * 120.00037 * 354.96304 * 7 5 4 31 31 H 1.08999 * 110.99845 * 200.93485 * 10 8 7 32 32 H 1.08998 * 111.00764 * 324.74801 * 10 8 7 33 33 H 1.08998 * 110.49499 * 278.44712 * 11 10 8 34 34 H 1.09000 * 110.34138 * 156.05752 * 11 10 8 35 35 H 0.96995 * 120.00233 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.87799 * 120.70181 * 21 12 11 37 37 H 1.09000 * 109.88613 * 241.71589 * 21 12 11 38 38 H 1.09001 * 113.61140 * 203.67326 * 22 4 3 39 39 H 1.09005 * 113.61240 * 334.57377 * 22 4 3 40 40 H 1.09005 * 113.61717 * 270.88298 * 23 22 4 41 41 H 1.09001 * 113.61756 * 139.98476 * 23 22 4 42 42 H 1.08991 * 113.61848 * 220.01829 * 24 23 22 43 43 H 1.08998 * 113.61282 * 89.11550 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0350 1.3330 1.1816 5 6 2.3373 1.2534 2.5150 6 8 2.4865 0.2780 3.2203 7 7 1.5472 2.2659 2.9237 8 6 0.7824 2.1423 4.1670 9 1 1.3557 1.5992 4.9183 10 6 0.3635 3.5399 4.6950 11 6 -0.9105 3.8183 3.8548 12 7 -1.5789 2.5091 3.7426 13 6 -2.9149 2.3119 3.5158 14 1 -3.3082 1.3086 3.4449 15 6 -3.7645 3.4015 3.3827 16 7 -3.2851 4.6243 3.4691 17 14 -5.5883 3.1325 3.0810 18 1 -6.2988 3.0527 4.3825 19 1 -6.1314 4.2653 2.2892 20 1 -5.7843 1.8656 2.3315 21 6 -0.5724 1.4503 3.9081 22 6 4.2082 0.3487 1.0405 23 6 4.9662 1.4774 0.3221 24 6 4.0752 2.4625 1.0972 25 1 -0.5400 -0.9353 -0.0004 26 1 -0.5400 0.9353 -0.0004 27 1 1.8499 -0.9354 0.0004 28 1 1.3586 2.1316 0.0895 29 1 2.6214 1.4024 -0.9314 30 1 1.4851 3.0766 2.3945 31 1 0.1329 3.5023 5.7597 32 1 1.1349 4.2823 4.4905 33 1 -0.6420 4.1931 2.8671 34 1 -1.5555 4.5307 4.3693 35 1 -3.8788 5.3857 3.3758 36 1 -0.8345 0.8192 4.7574 37 1 -0.5161 0.8473 3.0018 38 1 4.6536 0.0609 1.9928 39 1 3.9870 -0.5052 0.4001 40 1 4.8029 1.4961 -0.7555 41 1 6.0204 1.5364 0.5925 42 1 3.7469 3.3150 0.5028 43 1 4.4843 2.7526 2.0650 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265301050.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:09 Heat of formation + Delta-G solvation = 5.776651 kcal Electronic energy + Delta-G solvation = -22767.421832 eV Core-core repulsion = 19620.461168 eV Total energy + Delta-G solvation = -3146.960664 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73087 -39.65881 -38.24825 -35.49275 -35.18736 -33.56386 -31.04706 -29.62170 -28.69733 -26.69015 -26.47709 -25.56401 -22.46581 -22.03733 -21.28111 -20.92350 -19.59379 -18.89020 -18.13153 -17.44006 -16.70343 -16.48676 -16.08592 -15.75924 -15.51125 -15.24394 -14.81673 -14.67809 -14.39282 -13.94441 -13.70289 -13.41053 -13.25257 -13.01040 -12.91445 -12.79159 -12.77127 -12.33088 -12.11350 -12.05124 -12.03815 -12.02321 -11.83884 -11.46673 -11.43496 -11.12189 -10.75415 -10.56242 -10.20000 -10.01329 -8.88844 -7.78096 -5.21598 1.34543 1.45990 1.47077 1.55687 1.68079 2.29035 2.48770 3.31818 3.41866 3.55229 3.68349 3.79033 3.82762 3.91632 4.03844 4.09032 4.18334 4.28676 4.31842 4.62310 4.63892 4.65416 4.73260 4.83095 4.90566 4.91486 4.94344 4.98825 5.02809 5.04856 5.13173 5.17935 5.26893 5.43721 5.52087 5.60393 5.64313 5.71135 5.80448 5.82817 6.31585 6.63824 7.11631 7.31291 7.77133 8.40768 9.23136 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023027 B = 0.004989 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.687045 B = 5611.037131 C = 6119.627936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.060 4.060 4 C -0.103 4.103 5 C 0.528 3.472 6 O -0.585 6.585 7 N -0.703 5.703 8 C 0.144 3.856 9 H 0.090 0.910 10 C -0.133 4.133 11 C 0.156 3.844 12 N -0.618 5.618 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.058 4.058 16 N -0.944 5.944 17 Si 0.975 3.025 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.276 1.276 21 C 0.129 3.871 22 C -0.116 4.116 23 C -0.124 4.124 24 C -0.122 4.122 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.115 0.885 28 H 0.066 0.934 29 H 0.113 0.887 30 H 0.407 0.593 31 H 0.079 0.921 32 H 0.098 0.902 33 H -0.002 1.002 34 H 0.077 0.923 35 H 0.248 0.752 36 H 0.020 0.980 37 H 0.011 0.989 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.594 -2.620 -7.395 18.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.172 4.172 3 C -0.097 4.097 4 C -0.106 4.106 5 C 0.316 3.684 6 O -0.465 6.465 7 N -0.353 5.353 8 C 0.038 3.962 9 H 0.108 0.892 10 C -0.172 4.172 11 C 0.031 3.969 12 N -0.344 5.344 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.251 4.251 16 N -0.593 5.593 17 Si 0.804 3.196 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.201 1.201 21 C 0.002 3.998 22 C -0.154 4.154 23 C -0.161 4.161 24 C -0.159 4.159 25 H 0.114 0.886 26 H 0.100 0.900 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.131 0.869 30 H 0.242 0.758 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.015 0.985 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.038 0.962 37 H 0.029 0.971 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.101 0.899 42 H 0.112 0.888 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 16.495 -3.206 -6.924 18.174 hybrid contribution -1.660 0.014 -0.081 1.662 sum 14.835 -3.192 -7.005 16.713 Atomic orbital electron populations 1.23861 0.96624 1.01540 1.01504 1.22982 0.95493 0.99252 0.99483 1.20522 0.96839 0.95184 0.97165 1.22216 0.95075 1.02359 0.90962 1.21011 0.77684 0.81484 0.88179 1.90626 1.64703 1.33522 1.57670 1.45902 1.44935 1.19562 1.24947 1.21691 0.90218 0.97649 0.86628 0.89177 1.23204 0.98514 0.94964 1.00471 1.21807 0.91234 0.88334 0.95517 1.44717 1.03202 1.02035 1.84456 1.19349 0.83407 0.92856 1.41255 0.91176 1.25493 1.02036 0.95014 1.02539 1.69998 1.34136 0.97430 1.57749 0.85128 0.80080 0.76893 0.77516 1.21236 1.21607 1.20114 1.21737 0.89502 0.91554 0.97001 1.22847 0.94141 0.97280 1.01146 1.22811 0.99154 0.93901 1.00231 1.23004 0.94733 0.96365 1.01834 0.88564 0.89998 0.86669 0.91505 0.86855 0.75776 0.90201 0.88404 0.98453 0.90526 0.94188 0.96250 0.97107 0.90959 0.90550 0.88005 0.89899 0.88792 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.93 14.32 67.78 0.97 -4.96 16 2 C -0.15 -3.98 8.66 25.64 0.22 -3.75 16 3 C -0.06 -1.28 5.03 29.85 0.15 -1.13 16 4 C -0.10 -2.29 0.78 -52.40 -0.04 -2.33 16 5 C 0.53 16.53 6.21 87.66 0.54 17.07 16 6 O -0.59 -22.82 15.87 -3.04 -0.05 -22.86 16 7 N -0.70 -22.07 5.11 -436.92 -2.23 -24.30 16 8 C 0.14 5.22 3.29 46.18 0.15 5.38 16 9 H 0.09 3.25 7.63 -2.39 -0.02 3.23 16 10 C -0.13 -4.69 6.65 32.07 0.21 -4.47 16 11 C 0.16 7.32 5.89 86.93 0.51 7.84 16 12 N -0.62 -32.03 3.39 -691.57 -2.35 -34.38 16 13 C -0.24 -13.66 10.27 84.03 0.86 -12.79 16 14 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 15 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 16 N -0.94 -54.84 10.08 21.65 0.22 -54.62 16 17 Si 0.98 45.76 29.55 68.60 2.03 47.78 16 18 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 19 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 21 C 0.13 5.80 6.98 86.73 0.61 6.41 16 22 C -0.12 -2.31 6.75 31.12 0.21 -2.10 16 23 C -0.12 -1.64 7.73 31.12 0.24 -1.40 16 24 C -0.12 -1.96 7.22 31.12 0.22 -1.74 16 25 H 0.10 2.76 8.06 -2.91 -0.02 2.74 16 26 H 0.08 2.73 7.84 -2.91 -0.02 2.71 16 27 H 0.12 2.76 7.49 -2.91 -0.02 2.74 16 28 H 0.07 1.58 7.79 -2.39 -0.02 1.56 16 29 H 0.11 1.73 7.31 -2.38 -0.02 1.72 16 30 H 0.41 11.46 8.62 -92.71 -0.80 10.66 16 31 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 34 H 0.08 4.14 5.85 -2.39 -0.01 4.13 16 35 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.01 0.53 8.05 -2.39 -0.02 0.51 16 38 H 0.07 1.70 7.73 -2.39 -0.02 1.68 16 39 H 0.08 1.43 7.34 -2.38 -0.02 1.41 16 40 H 0.10 1.01 7.60 -2.38 -0.02 1.00 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.08 1.40 8.09 -2.39 -0.02 1.39 16 Total: -1.00 -68.37 344.96 3.13 -65.24 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 0.18 Total: 23.94 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 5.33 Total: -0.79 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -4.36 Total: -113.30 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -68.37 3.13 -65.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265301050.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.015 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds