Wall clock time and date at job start Tue Mar 31 2020 00:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00295 * 2 1 4 4 C 1.53004 * 109.46960 * 125.20279 * 3 2 1 5 5 C 1.50700 * 112.84922 * 304.04692 * 4 3 2 6 6 O 1.21279 * 119.99919 * 115.77108 * 5 4 3 7 7 N 1.34778 * 119.99919 * 295.77738 * 5 4 3 8 8 C 1.47424 * 125.65139 * 354.93559 * 7 5 4 9 9 C 1.55123 * 104.94435 * 204.04176 * 8 7 5 10 10 C 1.55156 * 101.48327 * 323.22388 * 9 8 7 11 11 H 1.09001 * 110.71790 * 276.82729 * 10 9 8 12 12 N 1.46493 * 110.72047 * 153.73630 * 10 9 8 13 13 C 1.36938 * 120.00380 * 88.84232 * 12 10 9 14 14 H 1.08001 * 119.99840 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00390 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99590 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00040 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47160 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47332 * 299.99467 * 17 15 13 20 20 H 1.48498 * 109.47214 * 59.99762 * 17 15 13 21 21 C 1.47027 * 125.64535 * 174.97655 * 7 5 4 22 22 C 1.53773 * 113.61432 * 75.24483 * 4 3 2 23 23 C 1.53955 * 87.01971 * 89.22915 * 22 4 3 24 24 C 1.53780 * 87.11155 * 25.36123 * 23 22 4 25 25 H 1.08001 * 119.99621 * 4.75776 * 1 2 3 26 26 H 1.08004 * 120.00410 * 184.75717 * 1 2 3 27 27 H 1.08003 * 119.99835 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46913 * 5.20174 * 3 2 1 29 29 H 1.08997 * 109.47381 * 245.20523 * 3 2 1 30 30 H 1.08999 * 110.36680 * 323.00556 * 8 7 5 31 31 H 1.08992 * 110.36400 * 85.32539 * 8 7 5 32 32 H 1.08996 * 111.16235 * 205.13070 * 9 8 7 33 33 H 1.09000 * 110.93446 * 81.21222 * 9 8 7 34 34 H 0.96995 * 120.00229 * 268.83360 * 12 10 9 35 35 H 0.96996 * 120.00500 * 0.02562 * 16 15 13 36 36 H 1.09005 * 109.88014 * 59.48901 * 21 7 5 37 37 H 1.09000 * 110.01389 * 298.39447 * 21 7 5 38 38 H 1.08997 * 113.61753 * 203.74629 * 22 4 3 39 39 H 1.09003 * 113.61643 * 334.64985 * 22 4 3 40 40 H 1.09001 * 113.53652 * 270.80820 * 23 22 4 41 41 H 1.09000 * 113.74642 * 139.94257 * 23 22 4 42 42 H 1.09000 * 113.61498 * 220.09253 * 24 23 22 43 43 H 1.08998 * 113.61047 * 89.19102 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0387 1.3308 1.1787 5 6 2.3602 1.1013 2.5046 6 8 2.6253 0.1151 3.1588 7 7 1.4588 1.9920 2.9634 8 6 1.1209 3.2781 2.3269 9 6 0.5651 4.1595 3.4761 10 6 -0.2132 3.1142 4.3182 11 1 -1.2087 2.9506 3.9055 12 7 -0.2977 3.5360 5.7186 13 6 -1.3392 4.3211 6.1356 14 1 -2.0982 4.6298 5.4320 15 6 -1.4190 4.7212 7.4625 16 7 -0.4937 4.3454 8.3198 17 14 -2.8394 5.7928 8.0311 18 1 -2.6943 6.0785 9.4812 19 1 -2.8317 7.0689 7.2717 20 1 -4.1216 5.0827 7.7928 21 6 0.6500 1.8423 4.1821 22 6 4.2860 0.4570 0.9656 23 6 4.9446 1.6937 0.3274 24 6 3.9818 2.5455 1.1714 25 1 -0.5399 0.9321 -0.0776 26 1 -0.5401 -0.9321 0.0776 27 1 1.8500 -0.9354 -0.0004 28 1 1.3589 2.1315 0.0932 29 1 2.6185 1.4042 -0.9329 30 1 2.0122 3.7336 1.8954 31 1 0.3590 3.1337 1.5610 32 1 -0.1045 4.9294 3.0930 33 1 1.3760 4.6018 4.0548 34 1 0.3841 3.2590 6.3505 35 1 0.2441 3.7892 8.0245 36 1 1.3022 1.7423 5.0498 37 1 0.0078 0.9656 4.0983 38 1 4.7608 0.1398 1.8940 39 1 4.1292 -0.3648 0.2669 40 1 4.7719 1.7737 -0.7459 41 1 5.9926 1.8217 0.5982 42 1 3.5798 3.4072 0.6387 43 1 4.3733 2.8003 2.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265928396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:34 Heat of formation + Delta-G solvation = 17.102493 kcal Electronic energy + Delta-G solvation = -22455.142231 eV Core-core repulsion = 19308.672693 eV Total energy + Delta-G solvation = -3146.469538 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87238 -38.44153 -36.94540 -34.56389 -34.30962 -31.56093 -29.46398 -28.88820 -27.44773 -25.84507 -25.00045 -23.37102 -22.79747 -20.50705 -20.08236 -19.80630 -18.43943 -17.55839 -17.00101 -15.93597 -15.67796 -15.60752 -14.78619 -14.62997 -14.11684 -13.94338 -13.65995 -13.61166 -13.26635 -12.68333 -12.55283 -12.43175 -12.25571 -12.03215 -11.86470 -11.73886 -11.30879 -11.21428 -11.02635 -10.74042 -10.70740 -10.63778 -10.40368 -10.30942 -10.01211 -9.58296 -9.33709 -9.22109 -8.98063 -8.39102 -7.12552 -6.15789 -3.17638 2.14837 2.78746 3.16217 3.49101 3.52383 3.70133 4.19462 4.28988 4.49455 4.56646 4.62722 4.74704 4.93734 4.97985 5.03760 5.20399 5.27302 5.31045 5.38021 5.47878 5.50635 5.55550 5.60642 5.64270 5.68345 5.73826 5.76167 5.87475 5.91120 5.96388 5.99042 6.17865 6.19700 6.31173 6.50492 6.52271 6.55430 6.63107 6.81820 7.73537 7.76369 8.35958 8.69248 9.13976 10.00578 10.14344 11.32060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003964 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.751890 B = 7061.201855 C = 7300.939399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.066 4.066 4 C -0.096 4.096 5 C 0.544 3.456 6 O -0.545 6.545 7 N -0.608 5.608 8 C 0.097 3.903 9 C -0.154 4.154 10 C 0.178 3.822 11 H 0.065 0.935 12 N -0.727 5.727 13 C -0.337 4.337 14 H 0.066 0.934 15 C -0.041 4.041 16 N -0.940 5.940 17 Si 1.081 2.919 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.295 1.295 21 C 0.100 3.900 22 C -0.112 4.112 23 C -0.140 4.140 24 C -0.126 4.126 25 H 0.096 0.904 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.369 0.631 35 H 0.256 0.744 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.206 -4.162 -20.309 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C -0.103 4.103 4 C -0.099 4.099 5 C 0.332 3.668 6 O -0.423 6.423 7 N -0.341 5.341 8 C -0.026 4.026 9 C -0.195 4.195 10 C 0.066 3.934 11 H 0.083 0.917 12 N -0.369 5.369 13 C -0.467 4.467 14 H 0.084 0.916 15 C -0.239 4.239 16 N -0.585 5.585 17 Si 0.911 3.089 18 H -0.210 1.210 19 H -0.222 1.222 20 H -0.222 1.222 21 C -0.023 4.023 22 C -0.149 4.149 23 C -0.178 4.178 24 C -0.164 4.164 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.203 0.797 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.531 -3.894 -18.759 20.241 hybrid contribution 0.754 -0.838 -1.154 1.614 sum 7.285 -4.732 -19.913 21.725 Atomic orbital electron populations 1.23834 0.95870 1.01975 1.00541 1.22828 0.96017 0.98256 1.00286 1.20532 0.97170 0.96383 0.96258 1.22044 0.94959 0.99871 0.93038 1.19948 0.78222 0.81873 0.86724 1.90670 1.63294 1.29165 1.59149 1.48381 1.39631 1.19990 1.26092 1.22505 0.99698 0.83844 0.96529 1.23574 1.00927 0.98713 0.96276 1.21107 0.95744 0.89654 0.86900 0.91696 1.42375 1.29527 1.61188 1.03817 1.20016 1.03223 1.27161 0.96321 0.91563 1.25810 1.03901 1.02289 0.91947 1.70880 1.13271 1.38362 1.35975 0.83235 0.74162 0.75269 0.76209 1.20999 1.22196 1.22187 1.22277 0.93694 0.99457 0.86899 1.22862 0.93989 0.96412 1.01673 1.22872 0.99067 0.96401 0.99438 1.22992 0.96167 0.95900 1.01301 0.88589 0.88486 0.87351 0.90477 0.89968 0.90989 0.91914 0.90524 0.90875 0.79721 0.93301 0.91576 0.91820 0.89086 0.90929 0.89905 0.91011 0.90480 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.96 14.31 29.01 0.42 -1.54 16 2 C -0.16 -1.67 8.62 -36.03 -0.31 -1.98 16 3 C -0.07 -0.63 4.89 -27.88 -0.14 -0.77 16 4 C -0.10 -1.09 0.37 -154.85 -0.06 -1.15 16 5 C 0.54 8.62 6.09 -10.98 -0.07 8.55 16 6 O -0.55 -10.75 16.45 5.56 0.09 -10.66 16 7 N -0.61 -9.54 3.33 -170.38 -0.57 -10.11 16 8 C 0.10 1.28 5.56 -2.41 -0.01 1.27 16 9 C -0.15 -2.52 6.79 -24.47 -0.17 -2.69 16 10 C 0.18 3.46 3.59 -66.10 -0.24 3.23 16 11 H 0.07 1.28 8.11 -51.93 -0.42 0.86 16 12 N -0.73 -17.90 5.23 -51.66 -0.27 -18.17 16 13 C -0.34 -9.23 9.97 -15.06 -0.15 -9.38 16 14 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 15 C -0.04 -1.18 5.50 -17.43 -0.10 -1.28 16 16 N -0.94 -28.90 13.70 55.49 0.76 -28.14 16 17 Si 1.08 25.47 29.92 -169.99 -5.09 20.39 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.10 1.84 6.63 -3.06 -0.02 1.82 16 22 C -0.11 -1.17 6.81 -25.83 -0.18 -1.35 16 23 C -0.14 -1.14 7.74 -25.83 -0.20 -1.34 16 24 C -0.13 -1.21 5.70 -25.92 -0.15 -1.36 16 25 H 0.10 0.95 7.86 -52.49 -0.41 0.54 16 26 H 0.10 0.97 8.06 -52.48 -0.42 0.55 16 27 H 0.11 1.16 7.93 -52.48 -0.42 0.74 16 28 H 0.08 0.72 5.80 -51.92 -0.30 0.42 16 29 H 0.08 0.63 7.31 -51.93 -0.38 0.25 16 30 H 0.07 0.81 5.71 -51.93 -0.30 0.51 16 31 H 0.06 0.73 7.27 -51.93 -0.38 0.35 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.37 9.52 6.37 -40.82 -0.26 9.26 16 35 H 0.26 7.78 6.77 -40.82 -0.28 7.51 16 36 H 0.07 1.33 7.70 -51.93 -0.40 0.94 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.09 1.12 7.69 -51.93 -0.40 0.72 16 39 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 40 H 0.08 0.55 7.61 -51.93 -0.39 0.15 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.62 7.41 -51.93 -0.38 0.24 16 43 H 0.09 0.94 8.09 -51.93 -0.42 0.52 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -32.49 340.46 -8.17 -40.66 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -6.87 Total: 8.87 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -1.36 Total: -7.97 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.08 Total: -56.42 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 25.47 SS G_CDS: -5.09 Total: 20.39 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.49 -8.17 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265928396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.761 kcal (2) G-P(sol) polarization free energy of solvation -32.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds