Wall clock time and date at job start Tue Mar 31 2020 00:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50696 * 120.00295 * 2 1 4 4 C 1.53004 * 109.46960 * 125.20279 * 3 2 1 5 5 C 1.50700 * 112.84922 * 304.04692 * 4 3 2 6 6 O 1.21279 * 119.99919 * 115.77108 * 5 4 3 7 7 N 1.34778 * 119.99919 * 295.77738 * 5 4 3 8 8 C 1.47424 * 125.65139 * 354.93559 * 7 5 4 9 9 C 1.55123 * 104.94435 * 204.04176 * 8 7 5 10 10 C 1.55156 * 101.48327 * 323.22388 * 9 8 7 11 11 H 1.09001 * 110.71790 * 276.82729 * 10 9 8 12 12 N 1.46493 * 110.72047 * 153.73630 * 10 9 8 13 13 C 1.36938 * 120.00380 * 88.84232 * 12 10 9 14 14 H 1.08001 * 119.99840 * 359.97438 * 13 12 10 15 15 C 1.38812 * 120.00390 * 180.02562 * 13 12 10 16 16 N 1.31621 * 119.99590 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00040 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47160 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47332 * 299.99467 * 17 15 13 20 20 H 1.48498 * 109.47214 * 59.99762 * 17 15 13 21 21 C 1.47027 * 125.64535 * 174.97655 * 7 5 4 22 22 C 1.53773 * 113.61432 * 75.24483 * 4 3 2 23 23 C 1.53955 * 87.01971 * 89.22915 * 22 4 3 24 24 C 1.53780 * 87.11155 * 25.36123 * 23 22 4 25 25 H 1.08001 * 119.99621 * 4.75776 * 1 2 3 26 26 H 1.08004 * 120.00410 * 184.75717 * 1 2 3 27 27 H 1.08003 * 119.99835 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46913 * 5.20174 * 3 2 1 29 29 H 1.08997 * 109.47381 * 245.20523 * 3 2 1 30 30 H 1.08999 * 110.36680 * 323.00556 * 8 7 5 31 31 H 1.08992 * 110.36400 * 85.32539 * 8 7 5 32 32 H 1.08996 * 111.16235 * 205.13070 * 9 8 7 33 33 H 1.09000 * 110.93446 * 81.21222 * 9 8 7 34 34 H 0.96995 * 120.00229 * 268.83360 * 12 10 9 35 35 H 0.96996 * 120.00500 * 0.02562 * 16 15 13 36 36 H 1.09005 * 109.88014 * 59.48901 * 21 7 5 37 37 H 1.09000 * 110.01389 * 298.39447 * 21 7 5 38 38 H 1.08997 * 113.61753 * 203.74629 * 22 4 3 39 39 H 1.09003 * 113.61643 * 334.64985 * 22 4 3 40 40 H 1.09001 * 113.53652 * 270.80820 * 23 22 4 41 41 H 1.09000 * 113.74642 * 139.94257 * 23 22 4 42 42 H 1.09000 * 113.61498 * 220.09253 * 24 23 22 43 43 H 1.08998 * 113.61047 * 89.19102 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0387 1.3308 1.1787 5 6 2.3602 1.1013 2.5046 6 8 2.6253 0.1151 3.1588 7 7 1.4588 1.9920 2.9634 8 6 1.1209 3.2781 2.3269 9 6 0.5651 4.1595 3.4761 10 6 -0.2132 3.1142 4.3182 11 1 -1.2087 2.9506 3.9055 12 7 -0.2977 3.5360 5.7186 13 6 -1.3392 4.3211 6.1356 14 1 -2.0982 4.6298 5.4320 15 6 -1.4190 4.7212 7.4625 16 7 -0.4937 4.3454 8.3198 17 14 -2.8394 5.7928 8.0311 18 1 -2.6943 6.0785 9.4812 19 1 -2.8317 7.0689 7.2717 20 1 -4.1216 5.0827 7.7928 21 6 0.6500 1.8423 4.1821 22 6 4.2860 0.4570 0.9656 23 6 4.9446 1.6937 0.3274 24 6 3.9818 2.5455 1.1714 25 1 -0.5399 0.9321 -0.0776 26 1 -0.5401 -0.9321 0.0776 27 1 1.8500 -0.9354 -0.0004 28 1 1.3589 2.1315 0.0932 29 1 2.6185 1.4042 -0.9329 30 1 2.0122 3.7336 1.8954 31 1 0.3590 3.1337 1.5610 32 1 -0.1045 4.9294 3.0930 33 1 1.3760 4.6018 4.0548 34 1 0.3841 3.2590 6.3505 35 1 0.2441 3.7892 8.0245 36 1 1.3022 1.7423 5.0498 37 1 0.0078 0.9656 4.0983 38 1 4.7608 0.1398 1.8940 39 1 4.1292 -0.3648 0.2669 40 1 4.7719 1.7737 -0.7459 41 1 5.9926 1.8217 0.5982 42 1 3.5798 3.4072 0.6387 43 1 4.3733 2.8003 2.1563 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265928396.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:33 Heat of formation + Delta-G solvation = -3.182822 kcal Electronic energy + Delta-G solvation = -22456.021868 eV Core-core repulsion = 19308.672693 eV Total energy + Delta-G solvation = -3147.349176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93316 -39.65289 -38.30119 -36.27397 -35.23556 -33.32904 -30.97707 -30.01987 -28.73596 -26.67003 -26.15527 -25.23782 -23.99986 -21.88613 -21.07687 -20.85799 -19.58365 -19.42691 -18.05258 -17.32022 -16.93931 -16.71076 -16.40808 -15.75841 -15.44326 -15.21917 -14.92519 -14.74499 -14.56576 -14.18978 -13.58131 -13.50635 -13.37568 -13.30771 -12.95805 -12.83119 -12.71934 -12.45321 -12.41153 -12.09475 -12.03808 -11.88227 -11.77204 -11.47252 -11.30563 -11.18473 -10.93652 -10.66608 -10.20307 -9.73304 -9.17708 -8.40643 -5.36759 1.34525 1.56364 1.59887 1.70017 1.85735 1.90740 2.72141 3.30947 3.37399 3.42235 3.58591 3.61302 3.77850 3.83619 3.84920 3.99409 4.14733 4.16515 4.26580 4.30320 4.40436 4.49880 4.59804 4.66034 4.74160 4.75910 4.84308 4.90119 4.93050 4.97441 5.06919 5.09252 5.14011 5.18755 5.20874 5.33483 5.48017 5.59352 5.71707 5.83534 6.45224 6.51680 7.03034 7.09916 7.92292 8.05949 9.10493 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028837 B = 0.003964 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.751890 B = 7061.201855 C = 7300.939399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C -0.061 4.061 4 C -0.094 4.094 5 C 0.537 3.463 6 O -0.595 6.595 7 N -0.607 5.607 8 C 0.106 3.894 9 C -0.144 4.144 10 C 0.172 3.828 11 H 0.068 0.932 12 N -0.744 5.744 13 C -0.330 4.330 14 H 0.076 0.924 15 C -0.104 4.104 16 N -0.977 5.977 17 Si 1.130 2.870 18 H -0.297 1.297 19 H -0.273 1.273 20 H -0.277 1.277 21 C 0.109 3.891 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.126 4.126 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.357 0.643 35 H 0.241 0.759 36 H 0.037 0.963 37 H 0.056 0.944 38 H 0.062 0.938 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.935 -2.621 -23.780 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.184 4.184 3 C -0.098 4.098 4 C -0.097 4.097 5 C 0.328 3.672 6 O -0.475 6.475 7 N -0.340 5.340 8 C -0.016 4.016 9 C -0.184 4.184 10 C 0.062 3.938 11 H 0.086 0.914 12 N -0.385 5.385 13 C -0.461 4.461 14 H 0.094 0.906 15 C -0.295 4.295 16 N -0.625 5.625 17 Si 0.954 3.046 18 H -0.223 1.223 19 H -0.199 1.199 20 H -0.203 1.203 21 C -0.016 4.016 22 C -0.159 4.159 23 C -0.159 4.159 24 C -0.163 4.163 25 H 0.124 0.876 26 H 0.113 0.887 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.189 0.811 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.129 0.871 41 H 0.096 0.904 42 H 0.122 0.878 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.262 -2.346 -22.321 23.301 hybrid contribution 0.858 -1.425 -0.109 1.667 sum 7.120 -3.771 -22.430 23.833 Atomic orbital electron populations 1.23967 0.96062 1.02448 1.00594 1.22979 0.96245 0.98902 1.00281 1.20592 0.97002 0.95796 0.96406 1.22200 0.95195 1.01459 0.90805 1.20957 0.77447 0.80850 0.87972 1.90644 1.64720 1.31269 1.60908 1.48483 1.39273 1.21116 1.25134 1.22654 1.01748 0.81711 0.95485 1.23381 1.00082 0.98427 0.96541 1.21302 0.96561 0.91053 0.84871 0.91377 1.42579 1.28814 1.61321 1.05801 1.20391 1.03363 1.25910 0.96407 0.90645 1.27262 1.05692 1.03849 0.92714 1.70999 1.14304 1.40304 1.36847 0.82614 0.72047 0.74761 0.75195 1.22342 1.19867 1.20326 1.21950 0.93316 0.98736 0.87549 1.22895 0.94017 0.97934 1.01019 1.22854 0.98962 0.93530 1.00536 1.23028 0.95909 0.96241 1.01142 0.87634 0.88697 0.88025 0.89503 0.86877 0.88020 0.88963 0.89092 0.92775 0.81084 0.94831 0.94462 0.92555 0.91927 0.90019 0.87087 0.90366 0.87784 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.74 14.31 67.78 0.97 -2.77 16 2 C -0.17 -3.21 8.62 25.65 0.22 -2.98 16 3 C -0.06 -0.93 4.89 29.85 0.15 -0.79 16 4 C -0.09 -1.91 0.37 -52.40 -0.02 -1.93 16 5 C 0.54 16.79 6.09 87.66 0.53 17.33 16 6 O -0.59 -24.31 16.45 -3.03 -0.05 -24.36 16 7 N -0.61 -18.57 3.33 -811.36 -2.70 -21.27 16 8 C 0.11 2.45 5.56 86.93 0.48 2.94 16 9 C -0.14 -4.46 6.79 32.06 0.22 -4.24 16 10 C 0.17 6.67 3.59 46.18 0.17 6.83 16 11 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 12 N -0.74 -37.41 5.23 -317.34 -1.66 -39.07 16 13 C -0.33 -18.10 9.97 84.03 0.84 -17.26 16 14 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 15 C -0.10 -6.00 5.50 84.86 0.47 -5.54 16 16 N -0.98 -61.76 13.70 21.65 0.30 -61.47 16 17 Si 1.13 51.12 29.92 68.60 2.05 53.17 16 18 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 19 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 21 C 0.11 4.11 6.63 86.73 0.57 4.68 16 22 C -0.12 -2.35 6.81 31.18 0.21 -2.14 16 23 C -0.12 -1.53 7.74 31.18 0.24 -1.29 16 24 C -0.13 -1.99 5.70 31.12 0.18 -1.81 16 25 H 0.11 1.80 7.86 -2.91 -0.02 1.78 16 26 H 0.09 1.81 8.06 -2.91 -0.02 1.79 16 27 H 0.10 2.06 7.93 -2.91 -0.02 2.04 16 28 H 0.09 1.18 5.80 -2.38 -0.01 1.16 16 29 H 0.11 1.10 7.31 -2.39 -0.02 1.08 16 30 H 0.10 1.83 5.71 -2.39 -0.01 1.82 16 31 H 0.09 1.70 7.27 -2.39 -0.02 1.68 16 32 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.36 19.38 6.37 -92.71 -0.59 18.79 16 35 H 0.24 15.39 6.77 -92.71 -0.63 14.77 16 36 H 0.04 1.60 7.70 -2.38 -0.02 1.59 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.06 1.57 7.69 -2.39 -0.02 1.55 16 39 H 0.08 1.41 7.87 -2.39 -0.02 1.39 16 40 H 0.11 0.84 7.61 -2.39 -0.02 0.83 16 41 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.12 7.41 -2.39 -0.02 1.10 16 43 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 Total: -1.00 -73.72 340.46 3.71 -70.01 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.54 Total: 31.95 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: 5.23 Total: -8.97 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -4.06 Total: -121.81 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 51.12 SS G_CDS: 2.05 Total: 53.17 kcal Total: -73.72 3.71 -70.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265928396.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.829 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds