Wall clock time and date at job start Tue Mar 31 2020 00:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 281.74626 * 3 2 1 5 5 C 1.52996 * 109.46959 * 143.25289 * 4 3 2 6 6 C 1.53004 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47104 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00019 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00247 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00468 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.49410 * 324.99904 * 10 9 7 12 12 C 1.53039 * 109.50159 * 204.93432 * 10 9 7 13 13 C 1.53036 * 109.54069 * 178.68146 * 12 10 9 14 14 C 1.53193 * 109.31351 * 61.36325 * 13 12 10 15 15 N 1.46921 * 108.77474 * 305.36760 * 14 13 12 16 16 C 1.36941 * 120.62814 * 233.60482 * 15 14 13 17 17 H 1.07998 * 119.99942 * 27.69298 * 16 15 14 18 18 C 1.38808 * 119.99990 * 207.68392 * 16 15 14 19 19 N 1.31615 * 120.00195 * 17.35536 * 18 16 15 20 20 Si 1.86802 * 119.99820 * 197.35388 * 18 16 15 21 21 H 1.48502 * 109.47232 * 60.00536 * 20 18 16 22 22 H 1.48502 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47239 * 300.00339 * 20 18 16 24 24 C 1.46929 * 118.76827 * 53.58915 * 15 14 13 25 25 H 1.08999 * 109.46971 * 115.00680 * 1 2 3 26 26 H 1.09000 * 109.47340 * 355.00330 * 1 2 3 27 27 H 1.09007 * 109.46695 * 235.00398 * 1 2 3 28 28 H 1.09005 * 109.46764 * 263.25343 * 4 3 2 29 29 H 1.08999 * 109.46857 * 23.24893 * 4 3 2 30 30 H 1.09000 * 109.46988 * 299.99605 * 5 4 3 31 31 H 1.09004 * 109.46979 * 59.99930 * 5 4 3 32 32 H 1.09005 * 109.46787 * 300.00108 * 6 5 4 33 33 H 1.08993 * 109.47144 * 59.99411 * 6 5 4 34 34 H 0.97007 * 119.99535 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.45453 * 298.70275 * 12 10 9 36 36 H 1.08995 * 109.45820 * 58.65714 * 12 10 9 37 37 H 1.08998 * 109.49605 * 181.31469 * 13 12 10 38 38 H 1.09001 * 109.49959 * 301.38188 * 13 12 10 39 39 H 1.09008 * 109.58645 * 65.15501 * 14 13 12 40 40 H 1.09004 * 109.58707 * 185.57526 * 14 13 12 41 41 H 0.97003 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.61686 * 186.64336 * 24 15 14 43 43 H 1.08997 * 109.56587 * 66.21149 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 0.0006 5 6 4.6280 1.1571 -0.8621 6 6 6.1580 1.1580 -0.8610 7 6 6.6603 2.2970 -1.7103 8 8 5.8721 3.0351 -2.2625 9 7 7.9853 2.4949 -1.8570 10 6 8.4736 3.6025 -2.6821 11 1 7.8016 3.7501 -3.5276 12 6 9.8775 3.2761 -3.1965 13 6 10.3754 4.4180 -4.0854 14 6 10.4502 5.7066 -3.2603 15 7 9.1393 5.9498 -2.6432 16 6 8.5002 7.1491 -2.8123 17 1 8.6821 7.7375 -3.6995 18 6 7.6187 7.6085 -1.8435 19 7 7.6440 7.0926 -0.6329 20 14 6.3963 8.9589 -2.2579 21 1 5.5120 8.5047 -3.3611 22 1 5.5750 9.2678 -1.0599 23 1 7.1305 10.1780 -2.6820 24 6 8.5262 4.8821 -1.8414 25 1 -0.3633 -0.4344 -0.9313 26 1 -0.3634 1.0237 0.0895 27 1 -0.3633 -0.5894 0.8419 28 1 4.4808 0.1219 1.0214 29 1 4.4818 -0.9430 -0.4048 30 1 4.2651 1.0361 -1.8828 31 1 4.2641 2.1011 -0.4566 32 1 6.5204 1.2791 0.1599 33 1 6.5222 0.2140 -1.2661 34 1 8.6157 1.9044 -1.4155 35 1 10.5543 3.1525 -2.3510 36 1 9.8468 2.3527 -3.7747 37 1 11.3656 4.1743 -4.4701 38 1 9.6859 4.5581 -4.9180 39 1 11.2061 5.5990 -2.4823 40 1 10.7087 6.5424 -3.9106 41 1 7.0277 7.4133 0.0440 42 1 7.5154 5.1734 -1.5558 43 1 9.1247 4.7075 -0.9474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266233785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:37 Heat of formation + Delta-G solvation = 7.154459 kcal Electronic energy + Delta-G solvation = -21407.036309 eV Core-core repulsion = 18260.135392 eV Total energy + Delta-G solvation = -3146.900917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.47017 -37.37226 -35.67269 -34.04827 -33.28836 -32.62785 -30.17306 -29.83392 -28.57577 -26.41583 -25.23628 -22.79012 -22.11281 -21.30849 -19.85026 -19.19897 -17.13929 -16.73955 -16.10925 -15.81738 -15.48001 -14.78940 -14.27716 -14.02988 -13.96078 -13.83683 -13.64618 -13.48342 -13.23699 -13.03353 -12.49724 -12.44746 -12.25980 -12.13873 -11.79428 -11.49020 -10.99057 -10.88181 -10.70533 -10.67447 -10.45626 -10.23797 -9.96521 -9.90663 -9.83248 -9.75458 -9.49387 -9.26016 -8.47248 -8.39172 -6.62678 -5.72494 -3.15596 2.62907 2.66560 3.12203 3.44934 3.51241 3.53874 3.62571 4.17780 4.57052 4.91454 5.00262 5.04240 5.33256 5.34628 5.38602 5.42917 5.45884 5.49074 5.51254 5.55968 5.59708 5.61841 5.66643 5.75384 5.90120 6.10919 6.15112 6.17039 6.34131 6.36417 6.44172 6.54135 6.72895 6.80080 6.97718 7.01948 7.34116 7.60441 7.75951 7.86044 8.01161 8.51314 8.74633 9.26277 9.90407 10.45066 11.35467 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.004139 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.965592 B = 6763.826264 C = 8303.508918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 C -0.202 4.202 3 C -0.181 4.181 4 C -0.006 4.006 5 C -0.100 4.100 6 C -0.139 4.139 7 C 0.507 3.493 8 O -0.534 6.534 9 N -0.723 5.723 10 C 0.116 3.884 11 H 0.080 0.920 12 C -0.115 4.115 13 C -0.131 4.131 14 C 0.142 3.858 15 N -0.589 5.589 16 C -0.257 4.257 17 H 0.066 0.934 18 C 0.007 3.993 19 N -0.899 5.899 20 Si 0.902 3.098 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.167 3.833 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.392 0.608 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.055 0.945 41 H 0.254 0.746 42 H 0.094 0.906 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.955 -16.754 0.919 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.202 4.202 3 C -0.181 4.181 4 C -0.043 4.043 5 C -0.138 4.138 6 C -0.180 4.180 7 C 0.292 3.708 8 O -0.410 6.410 9 N -0.374 5.374 10 C 0.011 3.989 11 H 0.098 0.902 12 C -0.154 4.154 13 C -0.171 4.171 14 C 0.016 3.984 15 N -0.312 5.312 16 C -0.387 4.387 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.543 5.543 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.040 3.960 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.224 0.776 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.112 0.888 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.631 -16.125 0.657 16.542 hybrid contribution -0.273 0.351 0.153 0.470 sum -3.904 -15.774 0.810 16.270 Atomic orbital electron populations 1.18824 0.84837 1.03022 1.02723 1.22400 0.93981 1.01840 1.02021 1.22378 0.93711 1.01039 1.00957 1.18729 0.84383 0.99782 1.01410 1.21281 0.93246 0.98414 1.00852 1.21661 0.97191 0.97999 1.01101 1.20537 0.82601 0.85870 0.81787 1.90748 1.55123 1.47236 1.47870 1.46103 1.06675 1.32644 1.51972 1.21943 0.94085 0.87878 0.95032 0.90167 1.21669 0.96353 0.97990 0.99344 1.22005 0.99610 0.96738 0.98766 1.20953 0.88508 0.94343 0.94585 1.43970 1.15762 1.12017 1.59449 1.19106 1.21548 0.96758 1.01269 0.91673 1.25020 1.01296 0.98400 0.94518 1.70006 1.37969 1.44804 1.01543 0.86374 0.81523 0.81543 0.77363 1.20874 1.21624 1.20907 1.21090 1.00633 0.83897 0.90350 0.90386 0.90215 0.90458 0.89569 0.89733 0.90881 0.90561 0.88849 0.89185 0.77553 0.92313 0.93180 0.92676 0.92157 0.96438 0.92653 0.93637 0.88755 0.96601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.31 10.32 34.37 0.35 0.04 16 2 C -0.20 -2.48 14.13 -37.12 -0.52 -3.00 16 3 C -0.18 -2.29 13.34 -37.12 -0.50 -2.79 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.23 16 5 C -0.10 -1.27 4.46 -26.73 -0.12 -1.38 16 6 C -0.14 -1.60 5.70 -27.88 -0.16 -1.76 16 7 C 0.51 8.66 7.80 -10.99 -0.09 8.57 16 8 O -0.53 -11.99 15.64 5.56 0.09 -11.90 16 9 N -0.72 -11.62 5.08 -53.69 -0.27 -11.90 16 10 C 0.12 2.29 2.60 -67.81 -0.18 2.11 16 11 H 0.08 1.82 7.58 -51.93 -0.39 1.43 16 12 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 13 C -0.13 -2.25 6.08 -26.61 -0.16 -2.42 16 14 C 0.14 3.00 6.52 -3.71 -0.02 2.97 16 15 N -0.59 -15.24 3.00 -172.31 -0.52 -15.75 16 16 C -0.26 -7.35 9.58 -15.06 -0.14 -7.50 16 17 H 0.07 1.81 7.89 -52.49 -0.41 1.40 16 18 C 0.01 0.20 4.91 -17.43 -0.09 0.11 16 19 N -0.90 -27.19 11.19 55.49 0.62 -26.57 16 20 Si 0.90 22.89 29.59 -169.99 -5.03 17.86 16 21 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.17 4.14 4.88 -3.71 -0.02 4.12 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 31 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.39 4.77 8.60 -40.82 -0.35 4.42 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.02 0.37 8.14 -51.92 -0.42 -0.05 16 40 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.09 2.76 6.04 -51.93 -0.31 2.44 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -34.99 355.60 -9.06 -44.04 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.36 Total: 2.02 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -1.95 Total: -3.17 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -0.17 Total: -54.22 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.09 Total: -11.90 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.03 Total: 17.86 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.99 -9.06 -44.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266233785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.199 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.045 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds