Wall clock time and date at job start Tue Mar 31 2020 00:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47202 * 1 3 3 C 1.17396 * 179.97438 * 2 1 4 4 C 1.47206 * 179.97438 * 281.74626 * 3 2 1 5 5 C 1.52996 * 109.46959 * 143.25289 * 4 3 2 6 6 C 1.53004 * 109.47024 * 179.97438 * 5 4 3 7 7 C 1.50694 * 109.47104 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00019 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00247 * 180.02562 * 7 6 5 10 10 C 1.46493 * 120.00468 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.49410 * 324.99904 * 10 9 7 12 12 C 1.53039 * 109.50159 * 204.93432 * 10 9 7 13 13 C 1.53036 * 109.54069 * 178.68146 * 12 10 9 14 14 C 1.53193 * 109.31351 * 61.36325 * 13 12 10 15 15 N 1.46921 * 108.77474 * 305.36760 * 14 13 12 16 16 C 1.36941 * 120.62814 * 233.60482 * 15 14 13 17 17 H 1.07998 * 119.99942 * 27.69298 * 16 15 14 18 18 C 1.38808 * 119.99990 * 207.68392 * 16 15 14 19 19 N 1.31615 * 120.00195 * 17.35536 * 18 16 15 20 20 Si 1.86802 * 119.99820 * 197.35388 * 18 16 15 21 21 H 1.48502 * 109.47232 * 60.00536 * 20 18 16 22 22 H 1.48502 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47239 * 300.00339 * 20 18 16 24 24 C 1.46929 * 118.76827 * 53.58915 * 15 14 13 25 25 H 1.08999 * 109.46971 * 115.00680 * 1 2 3 26 26 H 1.09000 * 109.47340 * 355.00330 * 1 2 3 27 27 H 1.09007 * 109.46695 * 235.00398 * 1 2 3 28 28 H 1.09005 * 109.46764 * 263.25343 * 4 3 2 29 29 H 1.08999 * 109.46857 * 23.24893 * 4 3 2 30 30 H 1.09000 * 109.46988 * 299.99605 * 5 4 3 31 31 H 1.09004 * 109.46979 * 59.99930 * 5 4 3 32 32 H 1.09005 * 109.46787 * 300.00108 * 6 5 4 33 33 H 1.08993 * 109.47144 * 59.99411 * 6 5 4 34 34 H 0.97007 * 119.99535 * 359.97438 * 9 7 6 35 35 H 1.09006 * 109.45453 * 298.70275 * 12 10 9 36 36 H 1.08995 * 109.45820 * 58.65714 * 12 10 9 37 37 H 1.08998 * 109.49605 * 181.31469 * 13 12 10 38 38 H 1.09001 * 109.49959 * 301.38188 * 13 12 10 39 39 H 1.09008 * 109.58645 * 65.15501 * 14 13 12 40 40 H 1.09004 * 109.58707 * 185.57526 * 14 13 12 41 41 H 0.97003 * 120.00019 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.61686 * 186.64336 * 24 15 14 43 43 H 1.08997 * 109.56587 * 66.21149 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0010 0.0006 5 6 4.6280 1.1571 -0.8621 6 6 6.1580 1.1580 -0.8610 7 6 6.6603 2.2970 -1.7103 8 8 5.8721 3.0351 -2.2625 9 7 7.9853 2.4949 -1.8570 10 6 8.4736 3.6025 -2.6821 11 1 7.8016 3.7501 -3.5276 12 6 9.8775 3.2761 -3.1965 13 6 10.3754 4.4180 -4.0854 14 6 10.4502 5.7066 -3.2603 15 7 9.1393 5.9498 -2.6432 16 6 8.5002 7.1491 -2.8123 17 1 8.6821 7.7375 -3.6995 18 6 7.6187 7.6085 -1.8435 19 7 7.6440 7.0926 -0.6329 20 14 6.3963 8.9589 -2.2579 21 1 5.5120 8.5047 -3.3611 22 1 5.5750 9.2678 -1.0599 23 1 7.1305 10.1780 -2.6820 24 6 8.5262 4.8821 -1.8414 25 1 -0.3633 -0.4344 -0.9313 26 1 -0.3634 1.0237 0.0895 27 1 -0.3633 -0.5894 0.8419 28 1 4.4808 0.1219 1.0214 29 1 4.4818 -0.9430 -0.4048 30 1 4.2651 1.0361 -1.8828 31 1 4.2641 2.1011 -0.4566 32 1 6.5204 1.2791 0.1599 33 1 6.5222 0.2140 -1.2661 34 1 8.6157 1.9044 -1.4155 35 1 10.5543 3.1525 -2.3510 36 1 9.8468 2.3527 -3.7747 37 1 11.3656 4.1743 -4.4701 38 1 9.6859 4.5581 -4.9180 39 1 11.2061 5.5990 -2.4823 40 1 10.7087 6.5424 -3.9106 41 1 7.0277 7.4133 0.0440 42 1 7.5154 5.1734 -1.5558 43 1 9.1247 4.7075 -0.9474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266233785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:37:36 Heat of formation + Delta-G solvation = -15.833135 kcal Electronic energy + Delta-G solvation = -21408.033126 eV Core-core repulsion = 18260.135392 eV Total energy + Delta-G solvation = -3147.897734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.91641 -39.00427 -36.64696 -35.75825 -34.44303 -34.17558 -31.95126 -31.13088 -29.85867 -27.38783 -27.21301 -24.14940 -23.85900 -22.63625 -21.32691 -20.74360 -18.76838 -18.27185 -17.20945 -17.15322 -16.87833 -16.53104 -15.81052 -15.53452 -15.25740 -14.99988 -14.78261 -14.70149 -14.34046 -14.27153 -14.14841 -13.97994 -13.60106 -13.20659 -13.19252 -12.94545 -12.67622 -12.50304 -12.46726 -12.26432 -12.08405 -11.86213 -11.69847 -11.59558 -11.26478 -10.82249 -10.61985 -10.58497 -10.57079 -10.02830 -8.70595 -7.91363 -5.36775 1.37981 1.44330 1.48700 1.70097 1.76379 1.78051 2.32477 2.48338 3.24671 3.38463 3.70273 3.86405 3.99462 4.07618 4.11777 4.15416 4.27902 4.47515 4.51176 4.63223 4.66154 4.72158 4.74722 4.80161 4.82282 4.83756 4.86515 4.93143 5.08486 5.13463 5.20030 5.20164 5.24581 5.32488 5.34742 5.50741 5.54181 5.60307 5.79799 6.34569 6.71834 6.73012 7.10211 7.45696 7.83930 8.32239 9.13021 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014603 B = 0.004139 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.965592 B = 6763.826264 C = 8303.508918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.221 4.221 3 C -0.216 4.216 4 C 0.001 3.999 5 C -0.096 4.096 6 C -0.124 4.124 7 C 0.496 3.504 8 O -0.598 6.598 9 N -0.710 5.710 10 C 0.129 3.871 11 H 0.044 0.956 12 C -0.105 4.105 13 C -0.123 4.123 14 C 0.135 3.865 15 N -0.612 5.612 16 C -0.267 4.267 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.929 5.929 20 Si 0.961 3.039 21 H -0.287 1.287 22 H -0.293 1.293 23 H -0.265 1.265 24 C 0.179 3.821 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.105 0.895 29 H 0.114 0.886 30 H 0.052 0.948 31 H 0.038 0.962 32 H 0.121 0.879 33 H 0.136 0.864 34 H 0.416 0.584 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.023 0.977 40 H 0.054 0.946 41 H 0.247 0.753 42 H 0.041 0.959 43 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -19.240 0.641 19.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.221 4.221 3 C -0.216 4.216 4 C -0.035 4.035 5 C -0.134 4.134 6 C -0.163 4.163 7 C 0.284 3.716 8 O -0.479 6.479 9 N -0.362 5.362 10 C 0.023 3.977 11 H 0.063 0.937 12 C -0.143 4.143 13 C -0.162 4.162 14 C 0.010 3.990 15 N -0.336 5.336 16 C -0.397 4.397 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.575 5.575 20 Si 0.789 3.211 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.190 1.190 24 C 0.052 3.948 25 H 0.110 0.890 26 H 0.103 0.897 27 H 0.115 0.885 28 H 0.123 0.877 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.154 0.846 34 H 0.253 0.747 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.116 0.884 38 H 0.067 0.933 39 H 0.041 0.959 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges -2.230 -18.652 0.378 18.789 hybrid contribution -0.678 1.134 0.220 1.340 sum -2.908 -17.518 0.598 17.768 Atomic orbital electron populations 1.19055 0.82662 1.03862 1.04284 1.23444 0.95529 1.01455 1.01653 1.23176 0.95066 1.01708 1.01682 1.18786 0.83097 0.99667 1.01975 1.21175 0.94321 0.97892 0.99998 1.21685 0.95903 0.97272 1.01466 1.21657 0.82262 0.86432 0.81217 1.90727 1.56711 1.49864 1.50554 1.45925 1.07137 1.31733 1.51394 1.21446 0.96077 0.86981 0.93241 0.93728 1.21631 0.93487 0.99039 1.00187 1.21909 1.01816 0.94756 0.97735 1.21186 0.86183 0.96708 0.94901 1.44270 1.17847 1.11614 1.59830 1.19467 1.21602 0.97639 1.00990 0.91520 1.25774 1.03202 1.01039 0.94574 1.70158 1.38658 1.46403 1.02298 0.85439 0.79329 0.79736 0.76633 1.21341 1.21932 1.19043 1.20801 0.97120 0.86107 0.90794 0.89019 0.89720 0.88489 0.87703 0.86812 0.92935 0.94291 0.86122 0.84580 0.74697 0.90536 0.89522 0.88376 0.93292 0.95911 0.92771 0.94408 0.94090 0.98130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.66 10.32 70.18 0.72 0.06 16 2 C -0.22 -5.35 14.13 31.13 0.44 -4.91 16 3 C -0.22 -5.42 13.34 31.13 0.42 -5.00 16 4 C 0.00 0.02 5.70 28.79 0.16 0.18 16 5 C -0.10 -2.41 4.46 30.59 0.14 -2.27 16 6 C -0.12 -2.57 5.70 29.85 0.17 -2.40 16 7 C 0.50 16.91 7.80 87.66 0.68 17.60 16 8 O -0.60 -28.33 15.64 -3.04 -0.05 -28.38 16 9 N -0.71 -21.90 5.08 -442.17 -2.25 -24.15 16 10 C 0.13 5.07 2.60 45.07 0.12 5.19 16 11 H 0.04 2.08 7.58 -2.38 -0.02 2.07 16 12 C -0.11 -3.08 5.35 30.62 0.16 -2.91 16 13 C -0.12 -3.86 6.08 30.67 0.19 -3.68 16 14 C 0.14 5.56 6.52 86.36 0.56 6.12 16 15 N -0.61 -32.29 3.00 -699.07 -2.09 -34.38 16 16 C -0.27 -15.67 9.58 84.03 0.81 -14.86 16 17 H 0.07 3.79 7.89 -2.91 -0.02 3.77 16 18 C -0.05 -3.02 4.91 84.86 0.42 -2.60 16 19 N -0.93 -58.71 11.19 21.65 0.24 -58.47 16 20 Si 0.96 48.62 29.59 68.60 2.03 50.65 16 21 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 22 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.18 9.13 4.88 86.36 0.42 9.55 16 25 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.51 8.10 -2.39 -0.02 1.49 16 31 H 0.04 1.24 8.10 -2.38 -0.02 1.22 16 32 H 0.12 1.94 8.14 -2.38 -0.02 1.92 16 33 H 0.14 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.42 8.77 8.60 -92.70 -0.80 7.97 16 35 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 41 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.04 2.53 6.04 -2.38 -0.01 2.51 16 43 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 Total: -1.00 -83.52 355.60 3.48 -80.04 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.19 Total: 14.64 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.41 Total: 0.05 kcal Atomic # 7 Polarization: -112.90 SS G_CDS: -4.10 Total: -117.00 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.38 kcal Atomic # 14 Polarization: 48.62 SS G_CDS: 2.03 Total: 50.65 kcal Total: -83.52 3.48 -80.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266233785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.206 kcal (2) G-P(sol) polarization free energy of solvation -83.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds