Wall clock time and date at job start Tue Mar 31 2020 00:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47633 * 17.95560 * 3 2 1 5 5 C 1.52997 * 109.47288 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46881 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46786 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99702 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99745 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46821 * 174.05421 * 10 9 7 12 12 H 1.08995 * 110.00345 * 61.59130 * 11 10 9 13 13 C 1.54310 * 109.77299 * 182.74640 * 11 10 9 14 14 C 1.55155 * 102.86813 * 141.88195 * 13 11 10 15 15 C 1.54910 * 101.58024 * 324.30594 * 14 13 11 16 16 N 1.47024 * 109.88334 * 300.49195 * 11 10 9 17 17 C 1.36940 * 125.64565 * 61.67731 * 16 11 10 18 18 H 1.08000 * 119.99697 * 31.77386 * 17 16 11 19 19 C 1.38806 * 120.00087 * 211.76632 * 17 16 11 20 20 N 1.31620 * 119.99972 * 199.10844 * 19 17 16 21 21 Si 1.86795 * 119.99958 * 19.38182 * 19 17 16 22 22 H 1.48503 * 109.47161 * 274.30607 * 21 19 17 23 23 H 1.48498 * 109.47518 * 34.30893 * 21 19 17 24 24 H 1.48504 * 109.47172 * 154.31193 * 21 19 17 25 25 H 4.44655 * 5.63330 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47253 * 257.94751 * 3 2 1 27 27 H 1.09001 * 109.46808 * 137.95185 * 3 2 1 28 28 H 1.09007 * 109.47337 * 59.99417 * 4 3 2 29 29 H 1.09001 * 109.46718 * 299.99680 * 4 3 2 30 30 H 1.08998 * 109.47331 * 59.99866 * 5 4 3 31 31 H 1.09001 * 109.47173 * 299.99638 * 5 4 3 32 32 H 1.08998 * 109.47029 * 59.99948 * 6 5 4 33 33 H 1.09001 * 109.47139 * 299.99925 * 6 5 4 34 34 H 0.96998 * 119.99978 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.46947 * 54.05113 * 10 9 7 36 36 H 1.08998 * 109.46900 * 294.05040 * 10 9 7 37 37 H 1.08998 * 110.92683 * 23.46956 * 13 11 10 38 38 H 1.09001 * 110.59173 * 260.14044 * 13 11 10 39 39 H 1.08997 * 111.00647 * 206.22923 * 14 13 11 40 40 H 1.09003 * 111.03456 * 82.38988 * 14 13 11 41 41 H 1.08997 * 110.36462 * 278.16942 * 15 14 13 42 42 H 1.08997 * 110.46373 * 155.89125 * 15 14 13 43 43 H 0.97000 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3713 -0.4447 5 6 4.6867 -1.3703 -0.4453 6 6 5.1974 -2.7426 -0.8894 7 6 6.7044 -2.7414 -0.8905 8 8 7.3102 -1.7417 -0.5675 9 7 7.3788 -3.8517 -1.2496 10 6 8.8438 -3.8504 -1.2513 11 6 9.3547 -5.2613 -1.5500 12 1 9.0187 -5.5783 -2.5372 13 6 10.8963 -5.2829 -1.4855 14 6 11.1954 -6.6553 -0.8264 15 6 10.0184 -6.7836 0.1726 16 7 8.8619 -6.1980 -0.5296 17 6 7.5466 -6.4837 -0.2771 18 1 6.8248 -6.4583 -1.0800 19 6 7.1412 -6.8058 1.0108 20 7 6.0010 -7.4344 1.2039 21 14 8.2101 -6.3405 2.4703 22 1 9.2284 -7.3977 2.6951 23 1 8.8896 -5.0492 2.1946 24 1 7.3619 -6.2048 3.6817 25 1 -1.0498 -0.0005 0.0001 26 1 3.0092 0.2154 1.0049 27 1 3.0089 0.7640 -0.6883 28 1 2.7934 -1.5860 -1.4497 29 1 2.7938 -2.1346 0.2436 30 1 5.0503 -1.1555 0.5596 31 1 5.0493 -0.6071 -1.1338 32 1 4.8337 -2.9578 -1.8941 33 1 4.8348 -3.5056 -0.2005 34 1 6.8942 -4.6514 -1.5075 35 1 9.2080 -3.5313 -0.2747 36 1 9.2056 -3.1635 -2.0163 37 1 11.2715 -4.4680 -0.8665 38 1 11.3226 -5.2353 -2.4876 39 1 12.1515 -6.6375 -0.3035 40 1 11.1707 -7.4573 -1.5642 41 1 10.2317 -6.2248 1.0838 42 1 9.8295 -7.8313 0.4064 43 1 5.7175 -7.6592 2.1039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267264090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:12 Heat of formation + Delta-G solvation = 15.228459 kcal Electronic energy + Delta-G solvation = -21717.346851 eV Core-core repulsion = 18570.796049 eV Total energy + Delta-G solvation = -3146.550803 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.23521 -37.90893 -36.05260 -33.82262 -33.06658 -32.70968 -30.17621 -30.03445 -28.99362 -25.58133 -24.52959 -23.38418 -21.29852 -20.86329 -19.75334 -19.25394 -18.10134 -17.14102 -16.23344 -15.88673 -15.61117 -15.20577 -15.05348 -14.57648 -14.23711 -13.50978 -13.50933 -13.33908 -12.98806 -12.68129 -12.50131 -12.48856 -11.73700 -11.63698 -11.53326 -11.26107 -11.15114 -11.10550 -10.90785 -10.65895 -10.53450 -10.52270 -10.23122 -10.17601 -10.14158 -10.04290 -9.58663 -9.18456 -8.70993 -8.24077 -7.00489 -6.09212 -3.48516 2.73757 2.76946 3.28388 3.31306 3.44002 3.50718 3.90939 4.31095 4.47064 4.90318 5.01546 5.02998 5.11845 5.19144 5.26764 5.38874 5.44969 5.48169 5.54695 5.63148 5.79328 5.84279 5.87713 5.93561 5.97190 6.01385 6.09457 6.10812 6.14501 6.24766 6.33233 6.39050 6.39755 6.49407 6.64569 6.75879 6.85139 7.21737 7.54413 7.72945 8.17175 8.31611 8.68993 8.93788 9.56194 10.13058 11.05739 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.004228 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.434416 B = 6620.872905 C = 7516.584294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C -0.016 4.016 4 C -0.115 4.115 5 C -0.101 4.101 6 C -0.141 4.141 7 C 0.509 3.491 8 O -0.569 6.569 9 N -0.701 5.701 10 C 0.116 3.884 11 C 0.143 3.857 12 H 0.049 0.951 13 C -0.124 4.124 14 C -0.132 4.132 15 C 0.116 3.884 16 N -0.601 5.601 17 C -0.247 4.247 18 H 0.084 0.916 19 C 0.039 3.961 20 N -0.901 5.901 21 Si 0.883 3.117 22 H -0.285 1.285 23 H -0.273 1.273 24 H -0.302 1.302 25 H 0.215 0.785 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.412 0.588 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.021 0.979 42 H 0.055 0.945 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.857 8.641 -5.480 10.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.179 4.179 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.181 4.181 7 C 0.295 3.705 8 O -0.450 6.450 9 N -0.354 5.354 10 C -0.011 4.011 11 C 0.036 3.964 12 H 0.066 0.934 13 C -0.162 4.162 14 C -0.170 4.170 15 C -0.009 4.009 16 N -0.327 5.327 17 C -0.374 4.374 18 H 0.101 0.899 19 C -0.162 4.162 20 N -0.543 5.543 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.199 1.199 24 H -0.230 1.230 25 H 0.232 0.768 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.251 0.749 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.641 9.215 -5.128 10.565 hybrid contribution 0.051 -0.228 0.980 1.008 sum -0.590 8.986 -4.147 9.915 Atomic orbital electron populations 1.24868 0.95960 1.01341 1.01787 1.23297 0.94716 1.00018 0.99869 1.18799 0.84353 0.99013 1.03055 1.21580 0.95754 0.95859 1.02110 1.21302 0.93441 0.96260 1.02860 1.21640 0.92718 0.99910 1.03873 1.20601 0.90084 0.83096 0.76710 1.90612 1.70805 1.33846 1.49697 1.46111 1.07400 1.14824 1.67031 1.21847 0.80556 0.97970 1.00684 1.21369 0.92374 0.88567 0.94125 0.93377 1.22523 0.95330 0.97875 1.00513 1.22719 0.98121 0.97047 0.99116 1.21899 0.87350 0.97650 0.93988 1.44799 1.01944 1.44984 1.40961 1.18317 0.82197 1.43602 0.93309 0.89861 1.25263 0.95516 0.98162 0.97308 1.69801 1.22642 1.39876 1.21976 0.86858 0.79608 0.79580 0.82670 1.21187 1.19881 1.22977 0.76821 0.89442 0.89539 0.91550 0.91261 0.91130 0.91315 0.89422 0.88356 0.74914 0.92244 0.93264 0.91427 0.91405 0.91806 0.91283 0.96176 0.92629 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.35 19.25 29.55 0.57 -1.78 16 2 C -0.18 -2.10 13.34 -37.13 -0.50 -2.60 16 3 C -0.02 -0.17 5.70 -29.52 -0.17 -0.33 16 4 C -0.12 -1.32 5.17 -26.73 -0.14 -1.46 16 5 C -0.10 -1.35 4.50 -26.73 -0.12 -1.47 16 6 C -0.14 -2.13 5.70 -27.88 -0.16 -2.29 16 7 C 0.51 9.64 7.83 -10.98 -0.09 9.56 16 8 O -0.57 -12.33 15.97 5.56 0.09 -12.25 16 9 N -0.70 -13.41 4.81 -60.29 -0.29 -13.70 16 10 C 0.12 2.17 5.21 -4.04 -0.02 2.15 16 11 C 0.14 2.60 3.38 -66.96 -0.23 2.38 16 12 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 13 C -0.12 -1.87 6.47 -24.90 -0.16 -2.03 16 14 C -0.13 -2.08 7.08 -24.58 -0.17 -2.25 16 15 C 0.12 2.40 4.92 -2.53 -0.01 2.38 16 16 N -0.60 -13.32 2.74 -162.59 -0.44 -13.76 16 17 C -0.25 -6.26 8.42 -15.06 -0.13 -6.39 16 18 H 0.08 2.18 6.94 -52.49 -0.36 1.82 16 19 C 0.04 1.05 5.44 -17.43 -0.09 0.96 16 20 N -0.90 -25.96 13.97 55.49 0.78 -25.19 16 21 Si 0.88 22.33 24.59 -169.99 -4.18 18.15 16 22 H -0.29 -7.01 7.04 56.52 0.40 -6.61 16 23 H -0.27 -7.07 6.96 56.52 0.39 -6.68 16 24 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 25 H 0.21 1.50 7.80 -54.10 -0.42 1.08 16 26 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 32 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.41 7.91 5.89 -40.82 -0.24 7.67 16 35 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 38 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.45 5.45 -51.93 -0.28 0.17 16 42 H 0.06 1.21 7.94 -51.93 -0.41 0.80 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 349.64 15.07 5.27 5.27 Total: -1.00 -31.14 349.64 -7.38 -38.53 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -7.19 Total: 6.13 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -1.41 Total: -3.18 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.04 Total: -52.65 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.25 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.18 Total: 18.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.14 -7.38 -38.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267264090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.756 kcal (2) G-P(sol) polarization free energy of solvation -31.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds