Wall clock time and date at job start Tue Mar 31 2020 00:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47633 * 17.95560 * 3 2 1 5 5 C 1.52997 * 109.47288 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.46881 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46786 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99810 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99702 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99745 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46821 * 174.05421 * 10 9 7 12 12 H 1.08995 * 110.00345 * 61.59130 * 11 10 9 13 13 C 1.54310 * 109.77299 * 182.74640 * 11 10 9 14 14 C 1.55155 * 102.86813 * 141.88195 * 13 11 10 15 15 C 1.54910 * 101.58024 * 324.30594 * 14 13 11 16 16 N 1.47024 * 109.88334 * 300.49195 * 11 10 9 17 17 C 1.36940 * 125.64565 * 61.67731 * 16 11 10 18 18 H 1.08000 * 119.99697 * 31.77386 * 17 16 11 19 19 C 1.38806 * 120.00087 * 211.76632 * 17 16 11 20 20 N 1.31620 * 119.99972 * 199.10844 * 19 17 16 21 21 Si 1.86795 * 119.99958 * 19.38182 * 19 17 16 22 22 H 1.48503 * 109.47161 * 274.30607 * 21 19 17 23 23 H 1.48498 * 109.47518 * 34.30893 * 21 19 17 24 24 H 1.48504 * 109.47172 * 154.31193 * 21 19 17 25 25 H 4.44655 * 5.63330 * 179.97438 * 4 1 2 26 26 H 1.08993 * 109.47253 * 257.94751 * 3 2 1 27 27 H 1.09001 * 109.46808 * 137.95185 * 3 2 1 28 28 H 1.09007 * 109.47337 * 59.99417 * 4 3 2 29 29 H 1.09001 * 109.46718 * 299.99680 * 4 3 2 30 30 H 1.08998 * 109.47331 * 59.99866 * 5 4 3 31 31 H 1.09001 * 109.47173 * 299.99638 * 5 4 3 32 32 H 1.08998 * 109.47029 * 59.99948 * 6 5 4 33 33 H 1.09001 * 109.47139 * 299.99925 * 6 5 4 34 34 H 0.96998 * 119.99978 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.46947 * 54.05113 * 10 9 7 36 36 H 1.08998 * 109.46900 * 294.05040 * 10 9 7 37 37 H 1.08998 * 110.92683 * 23.46956 * 13 11 10 38 38 H 1.09001 * 110.59173 * 260.14044 * 13 11 10 39 39 H 1.08997 * 111.00647 * 206.22923 * 14 13 11 40 40 H 1.09003 * 111.03456 * 82.38988 * 14 13 11 41 41 H 1.08997 * 110.36462 * 278.16942 * 15 14 13 42 42 H 1.08997 * 110.46373 * 155.89125 * 15 14 13 43 43 H 0.97000 * 120.00135 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3713 -0.4447 5 6 4.6867 -1.3703 -0.4453 6 6 5.1974 -2.7426 -0.8894 7 6 6.7044 -2.7414 -0.8905 8 8 7.3102 -1.7417 -0.5675 9 7 7.3788 -3.8517 -1.2496 10 6 8.8438 -3.8504 -1.2513 11 6 9.3547 -5.2613 -1.5500 12 1 9.0187 -5.5783 -2.5372 13 6 10.8963 -5.2829 -1.4855 14 6 11.1954 -6.6553 -0.8264 15 6 10.0184 -6.7836 0.1726 16 7 8.8619 -6.1980 -0.5296 17 6 7.5466 -6.4837 -0.2771 18 1 6.8248 -6.4583 -1.0800 19 6 7.1412 -6.8058 1.0108 20 7 6.0010 -7.4344 1.2039 21 14 8.2101 -6.3405 2.4703 22 1 9.2284 -7.3977 2.6951 23 1 8.8896 -5.0492 2.1946 24 1 7.3619 -6.2048 3.6817 25 1 -1.0498 -0.0005 0.0001 26 1 3.0092 0.2154 1.0049 27 1 3.0089 0.7640 -0.6883 28 1 2.7934 -1.5860 -1.4497 29 1 2.7938 -2.1346 0.2436 30 1 5.0503 -1.1555 0.5596 31 1 5.0493 -0.6071 -1.1338 32 1 4.8337 -2.9578 -1.8941 33 1 4.8348 -3.5056 -0.2005 34 1 6.8942 -4.6514 -1.5075 35 1 9.2080 -3.5313 -0.2747 36 1 9.2056 -3.1635 -2.0163 37 1 11.2715 -4.4680 -0.8665 38 1 11.3226 -5.2353 -2.4876 39 1 12.1515 -6.6375 -0.3035 40 1 11.1707 -7.4573 -1.5642 41 1 10.2317 -6.2248 1.0838 42 1 9.8295 -7.8313 0.4064 43 1 5.7175 -7.6592 2.1039 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267264090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:36:11 Heat of formation + Delta-G solvation = -3.740190 kcal Electronic energy + Delta-G solvation = -21718.169393 eV Core-core repulsion = 18570.796049 eV Total energy + Delta-G solvation = -3147.373345 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76112 -39.43879 -37.04012 -35.36729 -34.65041 -34.07072 -31.79162 -31.40645 -30.26193 -26.91498 -26.13057 -24.87805 -22.62726 -22.05092 -21.34528 -20.72337 -19.05215 -18.83047 -17.72089 -17.29953 -17.00987 -16.90221 -16.59501 -15.83297 -15.24944 -15.10355 -14.97180 -14.76149 -14.61370 -14.14472 -13.84516 -13.75836 -13.40721 -13.03226 -12.79049 -12.73048 -12.70523 -12.51314 -12.33221 -12.17387 -12.01530 -11.80495 -11.68480 -11.61032 -11.34320 -11.12987 -10.97050 -10.74220 -10.69306 -9.83056 -8.87579 -8.19926 -5.51822 1.24825 1.35513 1.43039 1.77298 1.88916 1.93479 2.38590 2.49960 3.10920 3.31945 3.51397 3.87718 3.91097 3.99150 4.03769 4.06346 4.18289 4.32626 4.40813 4.46077 4.49009 4.64070 4.69185 4.74183 4.79225 4.81695 4.87477 4.93180 5.02370 5.05811 5.09413 5.16514 5.21867 5.29686 5.33405 5.42734 5.49663 5.68930 5.81247 6.12901 6.72654 6.75947 6.79765 7.40300 7.55171 8.19468 8.98994 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019502 B = 0.004228 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.434416 B = 6620.872905 C = 7516.584294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.218 4.218 3 C -0.015 4.015 4 C -0.106 4.106 5 C -0.093 4.093 6 C -0.136 4.136 7 C 0.501 3.499 8 O -0.599 6.599 9 N -0.706 5.706 10 C 0.117 3.883 11 C 0.139 3.861 12 H 0.062 0.938 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.104 3.896 16 N -0.618 5.618 17 C -0.215 4.215 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.942 5.942 21 Si 0.924 3.076 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.314 1.314 25 H 0.244 0.756 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.411 0.589 35 H 0.029 0.971 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.005 0.995 42 H 0.038 0.962 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.092 9.250 -7.209 11.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.218 4.218 3 C -0.051 4.051 4 C -0.143 4.143 5 C -0.131 4.131 6 C -0.176 4.176 7 C 0.289 3.711 8 O -0.481 6.481 9 N -0.357 5.357 10 C -0.008 4.008 11 C 0.033 3.967 12 H 0.080 0.920 13 C -0.154 4.154 14 C -0.156 4.156 15 C -0.020 4.020 16 N -0.344 5.344 17 C -0.344 4.344 18 H 0.091 0.909 19 C -0.206 4.206 20 N -0.587 5.587 21 Si 0.756 3.244 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.243 1.243 25 H 0.260 0.740 26 H 0.106 0.894 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.106 0.894 34 H 0.249 0.751 35 H 0.048 0.952 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.101 0.899 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.353 9.826 -6.874 11.997 hybrid contribution -0.223 -0.384 1.426 1.493 sum 0.130 9.442 -5.448 10.902 Atomic orbital electron populations 1.25700 0.96920 0.99940 1.00484 1.23712 0.95535 1.01356 1.01158 1.18783 0.84226 0.98654 1.03462 1.21468 0.94048 0.96340 1.02492 1.21232 0.94775 0.95259 1.01836 1.21681 0.89972 1.00654 1.05294 1.21255 0.91594 0.82471 0.75747 1.90589 1.71768 1.34824 1.50953 1.46213 1.07777 1.14837 1.66914 1.21836 0.80438 0.98852 0.99723 1.21596 0.94872 0.87081 0.93117 0.92028 1.22565 0.92513 0.97505 1.02784 1.22678 0.96939 0.97855 0.98085 1.22004 0.88953 0.96151 0.94936 1.45014 1.01326 1.46484 1.41527 1.18369 0.83607 1.40044 0.92425 0.90891 1.25636 0.96268 0.99758 0.98920 1.69875 1.24324 1.42762 1.21781 0.86184 0.78466 0.78850 0.80930 1.20295 1.21182 1.24316 0.73976 0.89355 0.88346 0.90567 0.92142 0.92837 0.90932 0.86678 0.89350 0.75053 0.95229 0.90995 0.91093 0.87586 0.89080 0.89943 0.97726 0.94386 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.16 19.25 74.32 1.43 -2.73 16 2 C -0.22 -4.89 13.34 31.12 0.42 -4.48 16 3 C -0.01 -0.30 5.70 28.79 0.16 -0.14 16 4 C -0.11 -2.34 5.17 30.59 0.16 -2.19 16 5 C -0.09 -2.46 4.50 30.60 0.14 -2.32 16 6 C -0.14 -4.06 5.70 29.85 0.17 -3.89 16 7 C 0.50 18.93 7.83 87.66 0.69 19.62 16 8 O -0.60 -26.00 15.97 -3.03 -0.05 -26.05 16 9 N -0.71 -26.64 4.81 -463.06 -2.23 -28.87 16 10 C 0.12 4.26 5.21 86.38 0.45 4.71 16 11 C 0.14 4.74 3.38 45.34 0.15 4.90 16 12 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 13 C -0.12 -3.02 6.47 31.78 0.21 -2.82 16 14 C -0.12 -3.27 7.08 31.99 0.23 -3.04 16 15 C 0.10 4.16 4.92 86.86 0.43 4.59 16 16 N -0.62 -26.71 2.74 -668.30 -1.83 -28.54 16 17 C -0.22 -10.94 8.42 84.03 0.71 -10.23 16 18 H 0.07 3.84 6.94 -2.91 -0.02 3.82 16 19 C -0.01 -0.50 5.44 84.86 0.46 -0.04 16 20 N -0.94 -55.58 13.97 21.65 0.30 -55.28 16 21 Si 0.92 47.12 24.59 68.60 1.69 48.80 16 22 H -0.28 -13.48 7.04 99.48 0.70 -12.78 16 23 H -0.29 -14.90 6.96 99.48 0.69 -14.21 16 24 H -0.31 -16.49 7.11 99.48 0.71 -15.78 16 25 H 0.24 2.80 7.80 -4.43 -0.03 2.76 16 26 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 31 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 32 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.41 15.61 5.89 -92.71 -0.55 15.07 16 35 H 0.03 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.07 1.84 7.84 -2.39 -0.02 1.82 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.01 0.22 5.45 -2.39 -0.01 0.21 16 42 H 0.04 1.63 7.94 -2.39 -0.02 1.61 16 43 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -68.34 349.64 4.09 -64.25 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: 0.41 Total: 23.74 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: 5.79 Total: 1.94 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -3.75 Total: -112.68 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.05 Total: -26.05 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.69 Total: 48.80 kcal Total: -68.34 4.09 -64.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267264090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.512 kcal (2) G-P(sol) polarization free energy of solvation -68.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds