Wall clock time and date at job start Tue Mar 31 2020 00:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00046 * 2 1 4 4 C 1.52994 * 109.47354 * 120.82096 * 3 2 1 5 5 C 1.50702 * 112.85077 * 54.37165 * 4 3 2 6 6 O 1.21284 * 119.99708 * 245.27671 * 5 4 3 7 7 N 1.34776 * 120.00291 * 65.27527 * 5 4 3 8 8 C 1.46499 * 120.00090 * 174.92653 * 7 5 4 9 9 C 1.53003 * 109.47078 * 180.02562 * 8 7 5 10 10 C 1.53952 * 113.74140 * 273.74421 * 9 8 7 11 11 N 1.47813 * 86.03323 * 222.08468 * 10 9 8 12 12 C 1.36936 * 134.44923 * 204.64627 * 11 10 9 13 13 H 1.08004 * 119.99443 * 179.86794 * 12 11 10 14 14 C 1.38805 * 120.00784 * 359.86377 * 12 11 10 15 15 N 1.31626 * 119.99678 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00490 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47206 * 90.00048 * 16 14 12 18 18 H 1.48498 * 109.47371 * 210.00151 * 16 14 12 19 19 H 1.48495 * 109.47172 * 330.00204 * 16 14 12 20 20 C 1.47579 * 91.05320 * 24.54816 * 11 10 9 21 21 C 1.53778 * 113.61451 * 283.06364 * 4 3 2 22 22 C 1.53780 * 87.08306 * 220.01949 * 21 4 3 23 23 C 1.53779 * 113.61527 * 185.56643 * 4 3 2 24 24 H 1.08001 * 120.00232 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99932 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99932 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46412 * 240.82158 * 3 2 1 28 28 H 1.08996 * 109.47122 * 0.81676 * 3 2 1 29 29 H 0.97001 * 119.99627 * 354.93797 * 7 5 4 30 30 H 1.09000 * 109.47597 * 300.00378 * 8 7 5 31 31 H 1.09002 * 109.46707 * 60.00505 * 8 7 5 32 32 H 1.09000 * 112.94189 * 45.33247 * 9 8 7 33 33 H 1.09005 * 113.76843 * 336.34925 * 10 9 8 34 34 H 1.08999 * 113.76622 * 107.74490 * 10 9 8 35 35 H 0.96998 * 120.00081 * 179.97438 * 15 14 12 36 36 H 1.08999 * 113.77051 * 221.15159 * 20 11 10 37 37 H 1.08999 * 113.76806 * 89.75339 * 20 11 10 38 38 H 1.09006 * 113.61426 * 334.57379 * 21 4 3 39 39 H 1.08999 * 113.61615 * 105.46787 * 21 4 3 40 40 H 1.08995 * 113.61212 * 270.88049 * 22 21 4 41 41 H 1.08999 * 113.61187 * 139.97981 * 22 21 4 42 42 H 1.08995 * 113.61722 * 254.52728 * 23 4 3 43 43 H 1.09000 * 113.61234 * 25.43540 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9586 1.3773 1.2387 5 6 3.8787 0.1906 1.3658 6 8 3.7506 -0.5794 2.2941 7 7 4.8440 -0.0151 0.4479 8 6 5.8082 -1.1029 0.6301 9 6 6.7890 -1.1170 -0.5441 10 6 6.2913 -1.9227 -1.7579 11 7 7.6722 -2.4418 -1.8498 12 6 8.4376 -2.9571 -2.8617 13 1 9.4514 -3.2732 -2.6646 14 6 7.9106 -3.0734 -4.1405 15 7 6.6752 -2.6878 -4.3808 16 14 8.9544 -3.7771 -5.5205 17 1 8.7700 -5.2494 -5.5793 18 1 8.5388 -3.1741 -6.8124 19 1 10.3844 -3.4671 -5.2670 20 6 7.8954 -2.1795 -0.4148 21 6 2.1951 1.7085 2.5319 22 6 3.3854 2.6050 2.9119 23 6 3.6710 2.7298 1.4060 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.6791 1.3691 -0.8973 28 1 1.3553 2.1335 0.0146 29 1 4.9003 0.5573 -0.3332 30 1 6.3568 -0.9504 1.5595 31 1 5.2784 -2.0546 0.6728 32 1 7.1611 -0.1246 -0.7988 33 1 5.5518 -2.6832 -1.5070 34 1 5.9961 -1.3036 -2.6050 35 1 6.3070 -2.7687 -5.2745 36 1 8.8786 -1.7651 -0.1916 37 1 7.6282 -3.0156 0.2314 38 1 1.2697 2.2594 2.3637 39 1 2.0647 0.8521 3.1935 40 1 4.1673 2.0822 3.4627 41 1 3.0923 3.5446 3.3801 42 1 4.7320 2.6980 1.1587 43 1 3.1490 3.5600 0.9301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267693199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:42 Heat of formation + Delta-G solvation = 48.621018 kcal Electronic energy + Delta-G solvation = -21873.455349 eV Core-core repulsion = 18728.352557 eV Total energy + Delta-G solvation = -3145.102793 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.78309 -38.34417 -37.28868 -34.60418 -34.27061 -32.17062 -29.43579 -28.37634 -26.06378 -25.67475 -24.79980 -23.84941 -22.18921 -21.36436 -19.76919 -19.58454 -18.43507 -16.77914 -16.45810 -16.12782 -15.76329 -15.16467 -14.96158 -14.71572 -14.37112 -13.88505 -13.64732 -13.39617 -13.25371 -12.76766 -12.60254 -12.49178 -12.31844 -11.59070 -11.41111 -11.33112 -11.29244 -11.02417 -10.99311 -10.71835 -10.68364 -10.57787 -10.32269 -9.98658 -9.75521 -9.56509 -9.39906 -9.31869 -8.80909 -8.77943 -6.88483 -5.77639 -3.09751 2.24242 2.76359 3.31614 3.38663 3.43501 3.45284 4.26687 4.39434 4.44768 4.60686 4.67782 4.89613 4.98107 5.14081 5.19366 5.30601 5.33570 5.37169 5.50099 5.52693 5.57633 5.65728 5.71428 5.75074 5.83778 5.86733 5.98005 6.03429 6.06767 6.21301 6.26412 6.36373 6.56579 6.59659 6.65011 6.71510 6.77170 7.21129 7.34728 7.54220 7.70685 7.97336 8.38967 9.04023 9.70213 10.59335 11.39589 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.003727 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.456809 B = 7511.762054 C = 8105.397373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C -0.074 4.074 4 C -0.103 4.103 5 C 0.538 3.462 6 O -0.543 6.543 7 N -0.719 5.719 8 C 0.130 3.870 9 C -0.153 4.153 10 C 0.169 3.831 11 N -0.613 5.613 12 C -0.223 4.223 13 H 0.080 0.920 14 C -0.008 4.008 15 N -0.922 5.922 16 Si 0.912 3.088 17 H -0.289 1.289 18 H -0.290 1.290 19 H -0.281 1.281 20 C 0.128 3.872 21 C -0.115 4.115 22 C -0.143 4.143 23 C -0.126 4.126 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.109 0.891 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.401 0.599 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.027 0.973 34 H 0.072 0.928 35 H 0.253 0.747 36 H 0.045 0.955 37 H 0.036 0.964 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 12.358 11.171 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.165 4.165 3 C -0.112 4.112 4 C -0.106 4.106 5 C 0.324 3.676 6 O -0.420 6.420 7 N -0.370 5.370 8 C 0.006 3.994 9 C -0.173 4.173 10 C 0.044 3.956 11 N -0.339 5.339 12 C -0.351 4.351 13 H 0.097 0.903 14 C -0.204 4.204 15 N -0.569 5.569 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.216 1.216 19 H -0.206 1.206 20 C 0.001 3.999 21 C -0.153 4.153 22 C -0.180 4.180 23 C -0.163 4.163 24 H 0.114 0.886 25 H 0.112 0.888 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.236 0.764 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.103 0.897 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.664 11.690 11.502 19.035 hybrid contribution 0.514 -0.392 -1.258 1.415 sum -9.150 11.298 10.244 17.784 Atomic orbital electron populations 1.23762 0.95767 1.01606 1.02035 1.22923 0.96206 0.98407 0.98944 1.20709 0.97892 0.96143 0.96420 1.21981 0.96706 0.94216 0.97677 1.19815 0.80340 0.85538 0.81946 1.90671 1.71113 1.46769 1.33422 1.46003 1.31087 1.34650 1.25214 1.21445 0.89640 0.89767 0.98519 1.23797 0.97149 1.00107 0.96216 1.22343 0.87486 0.92853 0.92901 1.45983 1.10949 1.74295 1.02660 1.19039 0.94608 1.34554 0.86878 0.90269 1.24772 0.96538 1.01773 0.97360 1.69814 1.13927 1.52556 1.20636 0.86124 0.79308 0.78671 0.81697 1.21624 1.21621 1.20613 1.22486 0.95750 0.93765 0.87850 1.22829 0.96915 1.00114 0.95447 1.22844 0.98963 1.00090 0.96124 1.23000 1.00904 0.95345 0.97099 0.88599 0.88766 0.87339 0.90163 0.90437 0.76430 0.92120 0.91452 0.89256 0.95560 0.90994 0.93673 0.93686 0.94686 0.89655 0.89993 0.90075 0.91203 0.90854 0.89084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.99 14.32 29.01 0.42 -1.57 16 2 C -0.15 -1.70 8.85 -36.02 -0.32 -2.02 16 3 C -0.07 -0.72 5.12 -27.88 -0.14 -0.87 16 4 C -0.10 -1.09 0.81 -154.85 -0.13 -1.22 16 5 C 0.54 7.58 5.46 -10.99 -0.06 7.52 16 6 O -0.54 -9.63 15.96 5.55 0.09 -9.54 16 7 N -0.72 -9.80 5.55 -60.29 -0.33 -10.13 16 8 C 0.13 2.03 5.52 -4.04 -0.02 2.01 16 9 C -0.15 -2.71 3.93 -89.69 -0.35 -3.06 16 10 C 0.17 3.88 7.08 -2.83 -0.02 3.86 16 11 N -0.61 -15.68 3.70 -177.70 -0.66 -16.34 16 12 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 13 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 14 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 15 N -0.92 -27.24 11.39 55.49 0.63 -26.60 16 16 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 17 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 C 0.13 2.58 8.51 -2.97 -0.03 2.56 16 21 C -0.12 -1.17 7.00 -25.92 -0.18 -1.35 16 22 C -0.14 -1.32 7.81 -25.92 -0.20 -1.52 16 23 C -0.13 -1.09 7.22 -25.92 -0.19 -1.28 16 24 H 0.10 0.94 8.06 -52.49 -0.42 0.51 16 25 H 0.09 0.80 7.83 -52.48 -0.41 0.39 16 26 H 0.11 1.48 7.72 -52.48 -0.41 1.08 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 0.62 7.71 -51.93 -0.40 0.22 16 29 H 0.40 4.81 8.48 -40.82 -0.35 4.46 16 30 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.16 7.88 -51.93 -0.41 0.75 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 33 H 0.03 0.63 7.92 -51.93 -0.41 0.22 16 34 H 0.07 1.80 7.16 -51.93 -0.37 1.43 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 38 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 39 H 0.08 1.01 7.35 -51.93 -0.38 0.63 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 43 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -32.37 352.74 -8.78 -41.15 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.32 Total: 2.75 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.48 Total: -3.72 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.36 Total: -53.08 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.37 -8.78 -41.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267693199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.771 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds