Wall clock time and date at job start Tue Mar 31 2020 00:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50703 * 120.00046 * 2 1 4 4 C 1.52994 * 109.47354 * 120.82096 * 3 2 1 5 5 C 1.50702 * 112.85077 * 54.37165 * 4 3 2 6 6 O 1.21284 * 119.99708 * 245.27671 * 5 4 3 7 7 N 1.34776 * 120.00291 * 65.27527 * 5 4 3 8 8 C 1.46499 * 120.00090 * 174.92653 * 7 5 4 9 9 C 1.53003 * 109.47078 * 180.02562 * 8 7 5 10 10 C 1.53952 * 113.74140 * 273.74421 * 9 8 7 11 11 N 1.47813 * 86.03323 * 222.08468 * 10 9 8 12 12 C 1.36936 * 134.44923 * 204.64627 * 11 10 9 13 13 H 1.08004 * 119.99443 * 179.86794 * 12 11 10 14 14 C 1.38805 * 120.00784 * 359.86377 * 12 11 10 15 15 N 1.31626 * 119.99678 * 0.02562 * 14 12 11 16 16 Si 1.86792 * 120.00490 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47206 * 90.00048 * 16 14 12 18 18 H 1.48498 * 109.47371 * 210.00151 * 16 14 12 19 19 H 1.48495 * 109.47172 * 330.00204 * 16 14 12 20 20 C 1.47579 * 91.05320 * 24.54816 * 11 10 9 21 21 C 1.53778 * 113.61451 * 283.06364 * 4 3 2 22 22 C 1.53780 * 87.08306 * 220.01949 * 21 4 3 23 23 C 1.53779 * 113.61527 * 185.56643 * 4 3 2 24 24 H 1.08001 * 120.00232 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99932 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99932 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.46412 * 240.82158 * 3 2 1 28 28 H 1.08996 * 109.47122 * 0.81676 * 3 2 1 29 29 H 0.97001 * 119.99627 * 354.93797 * 7 5 4 30 30 H 1.09000 * 109.47597 * 300.00378 * 8 7 5 31 31 H 1.09002 * 109.46707 * 60.00505 * 8 7 5 32 32 H 1.09000 * 112.94189 * 45.33247 * 9 8 7 33 33 H 1.09005 * 113.76843 * 336.34925 * 10 9 8 34 34 H 1.08999 * 113.76622 * 107.74490 * 10 9 8 35 35 H 0.96998 * 120.00081 * 179.97438 * 15 14 12 36 36 H 1.08999 * 113.77051 * 221.15159 * 20 11 10 37 37 H 1.08999 * 113.76806 * 89.75339 * 20 11 10 38 38 H 1.09006 * 113.61426 * 334.57379 * 21 4 3 39 39 H 1.08999 * 113.61615 * 105.46787 * 21 4 3 40 40 H 1.08995 * 113.61212 * 270.88049 * 22 21 4 41 41 H 1.08999 * 113.61187 * 139.97981 * 22 21 4 42 42 H 1.08995 * 113.61722 * 254.52728 * 23 4 3 43 43 H 1.09000 * 113.61234 * 25.43540 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9586 1.3773 1.2387 5 6 3.8787 0.1906 1.3658 6 8 3.7506 -0.5794 2.2941 7 7 4.8440 -0.0151 0.4479 8 6 5.8082 -1.1029 0.6301 9 6 6.7890 -1.1170 -0.5441 10 6 6.2913 -1.9227 -1.7579 11 7 7.6722 -2.4418 -1.8498 12 6 8.4376 -2.9571 -2.8617 13 1 9.4514 -3.2732 -2.6646 14 6 7.9106 -3.0734 -4.1405 15 7 6.6752 -2.6878 -4.3808 16 14 8.9544 -3.7771 -5.5205 17 1 8.7700 -5.2494 -5.5793 18 1 8.5388 -3.1741 -6.8124 19 1 10.3844 -3.4671 -5.2670 20 6 7.8954 -2.1795 -0.4148 21 6 2.1951 1.7085 2.5319 22 6 3.3854 2.6050 2.9119 23 6 3.6710 2.7298 1.4060 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.6791 1.3691 -0.8973 28 1 1.3553 2.1335 0.0146 29 1 4.9003 0.5573 -0.3332 30 1 6.3568 -0.9504 1.5595 31 1 5.2784 -2.0546 0.6728 32 1 7.1611 -0.1246 -0.7988 33 1 5.5518 -2.6832 -1.5070 34 1 5.9961 -1.3036 -2.6050 35 1 6.3070 -2.7687 -5.2745 36 1 8.8786 -1.7651 -0.1916 37 1 7.6282 -3.0156 0.2314 38 1 1.2697 2.2594 2.3637 39 1 2.0647 0.8521 3.1935 40 1 4.1673 2.0822 3.4627 41 1 3.0923 3.5446 3.3801 42 1 4.7320 2.6980 1.1587 43 1 3.1490 3.5600 0.9301 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267693199.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:42 Heat of formation + Delta-G solvation = 28.381919 kcal Electronic energy + Delta-G solvation = -21874.332983 eV Core-core repulsion = 18728.352557 eV Total energy + Delta-G solvation = -3145.980426 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.76209 -39.91777 -38.44790 -35.77958 -35.27843 -34.16385 -30.85045 -29.56087 -27.64780 -26.57351 -26.45494 -24.91977 -23.69657 -22.47239 -21.09020 -20.55562 -19.69737 -18.74630 -17.44976 -17.28024 -17.00129 -16.74232 -16.19617 -15.74726 -15.73066 -15.37385 -14.91648 -14.65159 -14.41071 -14.09495 -13.86904 -13.46860 -13.28650 -13.21222 -13.12064 -12.88471 -12.51835 -12.39100 -12.25969 -12.06570 -11.82583 -11.76305 -11.59570 -11.46666 -11.28272 -11.09754 -10.88560 -10.65442 -10.14923 -10.03049 -8.93234 -7.91560 -5.25096 1.39596 1.45133 1.47065 1.55714 1.66531 2.20610 2.46909 3.29050 3.38057 3.48018 3.59665 3.70894 3.80182 3.95432 4.03373 4.12101 4.16938 4.34199 4.37171 4.55445 4.58782 4.74460 4.78121 4.83897 4.84783 4.86238 4.90991 5.00207 5.05813 5.08182 5.09664 5.18773 5.24291 5.29066 5.45150 5.51182 5.53854 5.63439 5.74307 5.89069 5.92856 6.59665 6.91286 7.27559 7.59777 8.55421 9.25384 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024503 B = 0.003727 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.456809 B = 7511.762054 C = 8105.397373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.172 4.172 3 C -0.069 4.069 4 C -0.105 4.105 5 C 0.536 3.464 6 O -0.585 6.585 7 N -0.714 5.714 8 C 0.142 3.858 9 C -0.113 4.113 10 C 0.167 3.833 11 N -0.645 5.645 12 C -0.238 4.238 13 H 0.084 0.916 14 C -0.066 4.066 15 N -0.953 5.953 16 Si 0.979 3.021 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.267 1.267 20 C 0.125 3.875 21 C -0.115 4.115 22 C -0.142 4.142 23 C -0.113 4.113 24 H 0.093 0.907 25 H 0.120 0.880 26 H 0.074 0.926 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.411 0.589 30 H 0.074 0.926 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.007 0.993 34 H 0.046 0.954 35 H 0.249 0.751 36 H 0.064 0.936 37 H 0.044 0.956 38 H 0.111 0.889 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.712 14.603 11.427 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C -0.106 4.106 4 C -0.108 4.108 5 C 0.323 3.677 6 O -0.465 6.465 7 N -0.365 5.365 8 C 0.018 3.982 9 C -0.133 4.133 10 C 0.042 3.958 11 N -0.371 5.371 12 C -0.366 4.366 13 H 0.101 0.899 14 C -0.259 4.259 15 N -0.602 5.602 16 Si 0.807 3.193 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.191 1.191 20 C 0.000 4.000 21 C -0.153 4.153 22 C -0.180 4.180 23 C -0.151 4.151 24 H 0.111 0.889 25 H 0.138 0.862 26 H 0.093 0.907 27 H 0.101 0.899 28 H 0.125 0.875 29 H 0.247 0.753 30 H 0.092 0.908 31 H 0.065 0.935 32 H 0.124 0.876 33 H 0.025 0.975 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.082 0.918 37 H 0.062 0.938 38 H 0.129 0.871 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.670 13.954 11.777 20.663 hybrid contribution 0.479 -1.156 -1.272 1.784 sum -9.191 12.798 10.506 18.938 Atomic orbital electron populations 1.23969 0.95304 1.02767 0.99949 1.22922 0.96894 0.98214 1.00998 1.20743 0.98086 0.95872 0.95869 1.21995 0.96570 0.93651 0.98594 1.20499 0.80197 0.86055 0.80910 1.90649 1.72202 1.48519 1.35140 1.45925 1.30767 1.34117 1.25691 1.21156 0.89459 0.89729 0.97890 1.23395 0.95992 0.99608 0.94286 1.22240 0.86473 0.92817 0.94275 1.46407 1.11793 1.74306 1.04604 1.19458 0.95250 1.33952 0.87977 0.89872 1.25618 0.97825 1.02704 0.99761 1.70001 1.15537 1.53988 1.20707 0.85077 0.78373 0.77523 0.78361 1.21636 1.21842 1.19119 1.22693 0.97502 0.94660 0.85138 1.22893 0.98370 0.99538 0.94495 1.22818 0.97863 1.00570 0.96710 1.23044 1.00993 0.94530 0.96491 0.88865 0.86161 0.90749 0.89905 0.87490 0.75256 0.90791 0.93507 0.87576 0.97507 0.93608 0.94255 0.91809 0.93833 0.87070 0.92950 0.92263 0.88945 0.90964 0.86109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 14.32 67.78 0.97 -2.51 16 2 C -0.17 -3.92 8.85 25.65 0.23 -3.70 16 3 C -0.07 -1.19 5.12 29.85 0.15 -1.04 16 4 C -0.10 -2.06 0.81 -52.40 -0.04 -2.11 16 5 C 0.54 15.06 5.46 87.66 0.48 15.54 16 6 O -0.58 -21.37 15.96 -3.04 -0.05 -21.42 16 7 N -0.71 -19.18 5.55 -463.05 -2.57 -21.75 16 8 C 0.14 4.39 5.52 86.38 0.48 4.87 16 9 C -0.11 -3.94 3.93 -10.13 -0.04 -3.98 16 10 C 0.17 7.86 7.08 86.44 0.61 8.48 16 11 N -0.64 -33.24 3.70 -716.13 -2.65 -35.89 16 12 C -0.24 -13.49 10.70 84.03 0.90 -12.59 16 13 H 0.08 4.50 7.83 -2.91 -0.02 4.47 16 14 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 15 N -0.95 -57.65 11.39 21.65 0.25 -57.41 16 16 Si 0.98 45.84 29.55 68.60 2.03 47.87 16 17 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 20 C 0.13 4.94 8.51 86.49 0.74 5.68 16 21 C -0.12 -2.14 7.00 31.12 0.22 -1.92 16 22 C -0.14 -2.31 7.81 31.12 0.24 -2.07 16 23 C -0.11 -1.60 7.22 31.12 0.22 -1.38 16 24 H 0.09 1.77 8.06 -2.91 -0.02 1.75 16 25 H 0.12 1.66 7.83 -2.91 -0.02 1.63 16 26 H 0.07 2.17 7.72 -2.91 -0.02 2.15 16 27 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.11 1.26 7.71 -2.39 -0.02 1.24 16 29 H 0.41 9.44 8.48 -92.71 -0.79 8.65 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.66 7.88 -2.39 -0.02 1.64 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 33 H 0.01 0.36 7.92 -2.38 -0.02 0.34 16 34 H 0.05 2.38 7.16 -2.39 -0.02 2.36 16 35 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 38 H 0.11 1.47 8.04 -2.38 -0.02 1.45 16 39 H 0.05 1.29 7.35 -2.39 -0.02 1.27 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 43 H 0.12 1.06 8.10 -2.39 -0.02 1.04 16 Total: -1.00 -72.24 352.74 2.81 -69.43 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.19 Total: 19.23 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.62 Total: -0.06 kcal Atomic # 7 Polarization: -110.07 SS G_CDS: -4.98 Total: -115.05 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.05 Total: -21.42 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.24 2.81 -69.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267693199.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.808 kcal (2) G-P(sol) polarization free energy of solvation -72.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds