Wall clock time and date at job start Tue Mar 31 2020 00:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47107 * 119.99898 * 2 1 4 4 O 1.21614 * 120.00100 * 264.83089 * 3 2 1 5 5 N 1.34776 * 120.00058 * 84.82668 * 3 2 1 6 6 C 1.47423 * 125.64593 * 2.44524 * 5 3 2 7 7 C 1.54912 * 104.83366 * 155.91003 * 6 5 3 8 8 C 1.55158 * 101.58280 * 37.00663 * 7 6 5 9 9 C 1.47022 * 125.65283 * 182.48629 * 5 3 2 10 10 H 1.08997 * 109.88000 * 300.60105 * 9 5 3 11 11 C 1.53007 * 109.88058 * 61.60468 * 9 5 3 12 12 N 1.46502 * 109.46840 * 279.37179 * 11 9 5 13 13 C 1.36943 * 119.99494 * 183.26762 * 12 11 9 14 14 H 1.07994 * 120.00027 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99928 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99603 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00223 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47465 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47121 * 300.00174 * 17 15 13 20 20 H 1.48507 * 109.46732 * 59.99893 * 17 15 13 21 21 C 1.32993 * 120.00665 * 179.97438 * 2 1 3 22 22 C 1.51404 * 136.32303 * 179.63332 * 21 2 1 23 23 C 1.53372 * 87.51718 * 206.05830 * 22 21 2 24 24 C 1.51413 * 136.30855 * 0.02562 * 21 2 1 25 25 H 1.09007 * 109.46890 * 53.53181 * 1 2 3 26 26 H 1.09003 * 109.46718 * 173.52562 * 1 2 3 27 27 H 1.09001 * 109.47690 * 293.53096 * 1 2 3 28 28 H 1.09000 * 110.37046 * 274.74292 * 6 5 3 29 29 H 1.08993 * 110.37136 * 37.07251 * 6 5 3 30 30 H 1.08991 * 111.00864 * 155.08366 * 7 6 5 31 31 H 1.09003 * 111.00302 * 278.89948 * 7 6 5 32 32 H 1.09004 * 110.72286 * 206.14180 * 8 7 6 33 33 H 1.08999 * 110.71880 * 82.86565 * 8 7 6 34 34 H 1.08996 * 109.47247 * 159.37330 * 11 9 5 35 35 H 1.08993 * 109.46789 * 39.36997 * 11 9 5 36 36 H 0.96996 * 120.00745 * 3.27307 * 12 11 9 37 37 H 0.96996 * 120.00065 * 0.02562 * 16 15 13 38 38 H 1.08999 * 113.55515 * 320.64124 * 22 21 2 39 39 H 1.08999 * 113.56046 * 91.37003 * 22 21 2 40 40 H 1.09005 * 113.96627 * 220.28693 * 23 22 21 41 41 H 1.08998 * 113.60088 * 88.79457 * 23 22 21 42 42 H 1.09002 * 113.55662 * 268.62253 * 24 21 2 43 43 H 1.08990 * 113.56126 * 39.28893 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.6287 1.7532 -1.0489 5 7 2.4882 1.9102 1.1624 6 6 2.1240 1.4196 2.5041 7 6 3.1141 2.1229 3.4658 8 6 3.2423 3.5238 2.8112 9 6 3.1632 3.2088 1.3025 10 1 4.1664 3.1526 0.8801 11 6 2.3572 4.2941 0.5859 12 7 2.6449 4.2481 -0.8499 13 6 2.0864 5.1742 -1.6900 14 1 1.4344 5.9386 -1.2941 15 6 2.3585 5.1302 -3.0505 16 7 3.1536 4.1988 -3.5329 17 14 1.5962 6.3930 -4.1967 18 1 2.0414 6.1304 -5.5888 19 1 0.1161 6.2981 -4.1236 20 1 2.0258 7.7548 -3.7887 21 6 2.1720 -1.1517 0.0005 22 6 3.6251 -1.5770 -0.0060 23 6 3.1709 -2.8819 -0.6718 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 0.6109 -0.8265 26 1 -0.3633 -1.0212 -0.1159 27 1 -0.3634 0.4103 0.9422 28 1 1.0983 1.6991 2.7447 29 1 2.2461 0.3379 2.5586 30 1 2.6969 2.1977 4.4700 31 1 4.0752 1.6090 3.4815 32 1 4.2006 3.9797 3.0602 33 1 2.4171 4.1681 3.1144 34 1 2.6333 5.2719 0.9805 35 1 1.2931 4.1237 0.7489 36 1 3.2307 3.5616 -1.2055 37 1 3.5491 3.5429 -2.9378 38 1 4.2566 -0.9603 -0.6454 39 1 4.0420 -1.7187 0.9911 40 1 3.6836 -3.7697 -0.3016 41 1 3.1400 -2.8288 -1.7601 42 1 1.7337 -3.0515 0.9997 43 1 0.9597 -2.8633 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267955543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:47 Heat of formation + Delta-G solvation = 25.509469 kcal Electronic energy + Delta-G solvation = -22758.441047 eV Core-core repulsion = 19612.336062 eV Total energy + Delta-G solvation = -3146.104984 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.05329 -38.64872 -36.95089 -34.50793 -33.01457 -31.22314 -31.09731 -28.47089 -26.66457 -25.53478 -24.75578 -23.58120 -22.52188 -21.52716 -20.98940 -19.15031 -17.68755 -16.91735 -16.48686 -16.17362 -15.63189 -15.34625 -14.49397 -14.08163 -13.52233 -13.44680 -13.34106 -13.33724 -13.07048 -12.86175 -12.56263 -12.50762 -12.32646 -12.00889 -11.77175 -11.58205 -11.50186 -11.20944 -10.96509 -10.83808 -10.63134 -10.53904 -10.44072 -10.26125 -9.80933 -9.23076 -8.89411 -8.62880 -8.60062 -8.18472 -6.63432 -5.79170 -2.74981 1.87683 3.12113 3.34717 3.63510 3.69252 3.86526 4.34937 4.47824 4.59064 4.64264 4.70818 4.88687 4.94904 5.02157 5.17135 5.33381 5.36074 5.42352 5.48636 5.56836 5.59454 5.68622 5.70807 5.72205 5.79511 5.85550 5.88282 5.88749 5.98796 6.00465 6.08255 6.19132 6.20744 6.28800 6.41919 6.53152 6.80625 6.84364 6.98510 7.91746 8.05804 8.68813 9.13644 9.67008 10.50867 10.69387 11.71642 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.005971 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.607828 B = 4688.514358 C = 5849.206870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.121 4.121 3 C 0.565 3.435 4 O -0.483 6.483 5 N -0.612 5.612 6 C 0.104 3.896 7 C -0.132 4.132 8 C -0.123 4.123 9 C 0.127 3.873 10 H 0.073 0.927 11 C 0.153 3.847 12 N -0.735 5.735 13 C -0.332 4.332 14 H 0.055 0.945 15 C -0.046 4.046 16 N -0.944 5.944 17 Si 1.078 2.922 18 H -0.286 1.286 19 H -0.299 1.299 20 H -0.298 1.298 21 C -0.129 4.129 22 C -0.108 4.108 23 C -0.136 4.136 24 C -0.097 4.097 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.012 0.988 36 H 0.384 0.616 37 H 0.264 0.736 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.952 -13.684 16.510 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.124 4.124 3 C 0.352 3.648 4 O -0.354 6.354 5 N -0.348 5.348 6 C -0.020 4.020 7 C -0.170 4.170 8 C -0.162 4.162 9 C 0.024 3.976 10 H 0.091 0.909 11 C 0.024 3.976 12 N -0.387 5.387 13 C -0.463 4.463 14 H 0.073 0.927 15 C -0.244 4.244 16 N -0.589 5.589 17 Si 0.910 3.090 18 H -0.212 1.212 19 H -0.227 1.227 20 H -0.226 1.226 21 C -0.130 4.130 22 C -0.145 4.145 23 C -0.173 4.173 24 C -0.134 4.134 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.041 0.959 35 H 0.029 0.971 36 H 0.224 0.776 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.978 -12.815 14.292 19.297 hybrid contribution 0.059 -0.564 1.592 1.690 sum -1.919 -13.378 15.884 20.856 Atomic orbital electron populations 1.20586 0.89757 1.02632 1.02673 1.20396 0.96193 0.91263 1.04571 1.17962 0.79983 0.84051 0.82814 1.90880 1.49705 1.64858 1.29974 1.48498 1.59759 1.21131 1.05434 1.22200 0.98397 0.98784 0.82583 1.22758 0.99675 0.96234 0.98350 1.22632 1.03043 0.96949 0.93535 1.21926 0.96917 0.83536 0.95191 0.90896 1.20908 0.95708 0.94058 0.86936 1.42771 1.58595 1.36526 1.00798 1.19971 1.26415 1.08370 0.91585 0.92692 1.25631 1.00796 1.02956 0.95020 1.70715 1.33103 1.17307 1.37781 0.83292 0.74957 0.74447 0.76322 1.21193 1.22660 1.22565 1.22823 0.97361 0.93503 0.99279 1.22127 0.94216 0.96965 1.01181 1.22628 0.96702 0.97384 1.00599 1.22126 0.98236 0.91974 1.01095 0.90829 0.91441 0.91364 0.91835 0.91083 0.90101 0.90823 0.90142 0.90328 0.95885 0.97062 0.77594 0.92421 0.90626 0.89169 0.90802 0.89669 0.88938 0.90886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.10 36.00 0.36 -0.99 16 2 C -0.12 -1.93 4.67 -102.85 -0.48 -2.41 16 3 C 0.56 11.30 6.94 -12.66 -0.09 11.21 16 4 O -0.48 -12.55 13.74 5.27 0.07 -12.48 16 5 N -0.61 -10.41 3.06 -164.40 -0.50 -10.91 16 6 C 0.10 1.24 6.66 -2.53 -0.02 1.22 16 7 C -0.13 -1.31 7.09 -24.58 -0.17 -1.48 16 8 C -0.12 -1.54 6.40 -24.90 -0.16 -1.70 16 9 C 0.13 2.29 3.03 -66.95 -0.20 2.09 16 10 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 11 C 0.15 3.49 5.60 -4.04 -0.02 3.47 16 12 N -0.74 -21.23 4.64 -59.91 -0.28 -21.50 16 13 C -0.33 -10.48 9.99 -15.06 -0.15 -10.63 16 14 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 15 C -0.05 -1.47 5.50 -17.43 -0.10 -1.56 16 16 N -0.94 -32.50 13.70 55.49 0.76 -31.74 16 17 Si 1.08 28.34 29.92 -169.99 -5.09 23.26 16 18 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 21 C -0.13 -1.75 6.67 -100.48 -0.67 -2.42 16 22 C -0.11 -1.34 7.83 -27.56 -0.22 -1.55 16 23 C -0.14 -1.39 8.17 -26.21 -0.21 -1.60 16 24 C -0.10 -0.97 7.45 -27.41 -0.20 -1.18 16 25 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.74 7.35 -51.93 -0.38 0.36 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.94 7.85 -51.93 -0.41 0.53 16 34 H 0.02 0.52 8.02 -51.93 -0.42 0.11 16 35 H 0.01 0.28 8.13 -51.93 -0.42 -0.15 16 36 H 0.38 11.67 3.74 -40.82 -0.15 11.52 16 37 H 0.26 9.26 6.77 -40.82 -0.28 8.98 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.70 7.97 -51.93 -0.41 0.29 16 LS Contribution 345.51 15.07 5.21 5.21 Total: -1.00 -38.81 345.51 -9.31 -48.11 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.15 Total: 7.59 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -2.33 Total: -7.53 kcal Atomic # 7 Polarization: -64.13 SS G_CDS: -0.02 Total: -64.15 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.07 Total: -12.48 kcal Atomic # 14 Polarization: 28.34 SS G_CDS: -5.09 Total: 23.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -38.81 -9.31 -48.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267955543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.621 kcal (2) G-P(sol) polarization free energy of solvation -38.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds