Wall clock time and date at job start Tue Mar 31 2020 00:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.47107 * 119.99898 * 2 1 4 4 O 1.21614 * 120.00100 * 264.83089 * 3 2 1 5 5 N 1.34776 * 120.00058 * 84.82668 * 3 2 1 6 6 C 1.47423 * 125.64593 * 2.44524 * 5 3 2 7 7 C 1.54912 * 104.83366 * 155.91003 * 6 5 3 8 8 C 1.55158 * 101.58280 * 37.00663 * 7 6 5 9 9 C 1.47022 * 125.65283 * 182.48629 * 5 3 2 10 10 H 1.08997 * 109.88000 * 300.60105 * 9 5 3 11 11 C 1.53007 * 109.88058 * 61.60468 * 9 5 3 12 12 N 1.46502 * 109.46840 * 279.37179 * 11 9 5 13 13 C 1.36943 * 119.99494 * 183.26762 * 12 11 9 14 14 H 1.07994 * 120.00027 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99928 * 180.02562 * 13 12 11 16 16 N 1.31623 * 119.99603 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00223 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.47465 * 179.97438 * 17 15 13 19 19 H 1.48501 * 109.47121 * 300.00174 * 17 15 13 20 20 H 1.48507 * 109.46732 * 59.99893 * 17 15 13 21 21 C 1.32993 * 120.00665 * 179.97438 * 2 1 3 22 22 C 1.51404 * 136.32303 * 179.63332 * 21 2 1 23 23 C 1.53372 * 87.51718 * 206.05830 * 22 21 2 24 24 C 1.51413 * 136.30855 * 0.02562 * 21 2 1 25 25 H 1.09007 * 109.46890 * 53.53181 * 1 2 3 26 26 H 1.09003 * 109.46718 * 173.52562 * 1 2 3 27 27 H 1.09001 * 109.47690 * 293.53096 * 1 2 3 28 28 H 1.09000 * 110.37046 * 274.74292 * 6 5 3 29 29 H 1.08993 * 110.37136 * 37.07251 * 6 5 3 30 30 H 1.08991 * 111.00864 * 155.08366 * 7 6 5 31 31 H 1.09003 * 111.00302 * 278.89948 * 7 6 5 32 32 H 1.09004 * 110.72286 * 206.14180 * 8 7 6 33 33 H 1.08999 * 110.71880 * 82.86565 * 8 7 6 34 34 H 1.08996 * 109.47247 * 159.37330 * 11 9 5 35 35 H 1.08993 * 109.46789 * 39.36997 * 11 9 5 36 36 H 0.96996 * 120.00745 * 3.27307 * 12 11 9 37 37 H 0.96996 * 120.00065 * 0.02562 * 16 15 13 38 38 H 1.08999 * 113.55515 * 320.64124 * 22 21 2 39 39 H 1.08999 * 113.56046 * 91.37003 * 22 21 2 40 40 H 1.09005 * 113.96627 * 220.28693 * 23 22 21 41 41 H 1.08998 * 113.60088 * 88.79457 * 23 22 21 42 42 H 1.09002 * 113.55662 * 268.62253 * 24 21 2 43 43 H 1.08990 * 113.56126 * 39.28893 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 2.6287 1.7532 -1.0489 5 7 2.4882 1.9102 1.1624 6 6 2.1240 1.4196 2.5041 7 6 3.1141 2.1229 3.4658 8 6 3.2423 3.5238 2.8112 9 6 3.1632 3.2088 1.3025 10 1 4.1664 3.1526 0.8801 11 6 2.3572 4.2941 0.5859 12 7 2.6449 4.2481 -0.8499 13 6 2.0864 5.1742 -1.6900 14 1 1.4344 5.9386 -1.2941 15 6 2.3585 5.1302 -3.0505 16 7 3.1536 4.1988 -3.5329 17 14 1.5962 6.3930 -4.1967 18 1 2.0414 6.1304 -5.5888 19 1 0.1161 6.2981 -4.1236 20 1 2.0258 7.7548 -3.7887 21 6 2.1720 -1.1517 0.0005 22 6 3.6251 -1.5770 -0.0060 23 6 3.1709 -2.8819 -0.6718 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 0.6109 -0.8265 26 1 -0.3633 -1.0212 -0.1159 27 1 -0.3634 0.4103 0.9422 28 1 1.0983 1.6991 2.7447 29 1 2.2461 0.3379 2.5586 30 1 2.6969 2.1977 4.4700 31 1 4.0752 1.6090 3.4815 32 1 4.2006 3.9797 3.0602 33 1 2.4171 4.1681 3.1144 34 1 2.6333 5.2719 0.9805 35 1 1.2931 4.1237 0.7489 36 1 3.2307 3.5616 -1.2055 37 1 3.5491 3.5429 -2.9378 38 1 4.2566 -0.9603 -0.6454 39 1 4.0420 -1.7187 0.9911 40 1 3.6836 -3.7697 -0.3016 41 1 3.1400 -2.8288 -1.7601 42 1 1.7337 -3.0515 0.9997 43 1 0.9597 -2.8633 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267955543.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:46 Heat of formation + Delta-G solvation = -0.979579 kcal Electronic energy + Delta-G solvation = -22759.589698 eV Core-core repulsion = 19612.336062 eV Total energy + Delta-G solvation = -3147.253636 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40121 -39.68232 -38.37320 -36.62009 -34.31790 -33.20958 -32.27490 -30.18114 -27.69001 -26.49121 -26.46171 -25.11128 -24.36839 -22.75796 -22.05229 -20.47708 -19.40872 -18.67560 -17.80688 -17.54753 -16.93863 -16.43220 -16.01231 -15.70614 -15.44122 -15.22380 -14.79985 -14.56678 -14.30925 -14.05664 -13.89034 -13.68180 -13.37997 -13.21675 -13.07815 -12.88653 -12.58592 -12.56487 -12.52004 -12.22386 -12.12553 -11.90047 -11.86954 -11.66481 -11.41204 -11.20176 -10.94067 -10.65949 -9.75429 -9.65136 -9.01031 -8.37338 -5.26121 0.76205 1.49547 1.63290 1.64622 1.79815 2.05809 2.71564 3.28817 3.42721 3.48819 3.57122 3.62814 3.75548 3.85837 4.01240 4.19303 4.20993 4.23318 4.28233 4.37279 4.53700 4.62586 4.66242 4.69060 4.71336 4.72575 4.74264 4.82766 4.89727 4.91596 4.95209 5.03513 5.05217 5.09210 5.23872 5.32095 5.36321 5.47708 5.54678 5.76445 6.53004 6.57141 7.09688 7.36150 8.17599 8.28588 9.15607 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.015393 B = 0.005971 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.607828 B = 4688.514358 C = 5849.206870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.157 4.157 3 C 0.554 3.446 4 O -0.562 6.562 5 N -0.610 5.610 6 C 0.096 3.904 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.127 3.873 10 H 0.042 0.958 11 C 0.150 3.850 12 N -0.753 5.753 13 C -0.340 4.340 14 H 0.059 0.941 15 C -0.112 4.112 16 N -0.973 5.973 17 Si 1.134 2.866 18 H -0.291 1.291 19 H -0.280 1.280 20 H -0.272 1.272 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.081 4.081 25 H 0.037 0.963 26 H 0.097 0.903 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.031 0.969 35 H 0.002 0.998 36 H 0.374 0.626 37 H 0.243 0.757 38 H 0.036 0.964 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.128 0.872 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -15.195 19.631 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.160 4.160 3 C 0.344 3.656 4 O -0.440 6.440 5 N -0.344 5.344 6 C -0.026 4.026 7 C -0.153 4.153 8 C -0.152 4.152 9 C 0.023 3.977 10 H 0.060 0.940 11 C 0.022 3.978 12 N -0.404 5.404 13 C -0.472 4.472 14 H 0.077 0.923 15 C -0.303 4.303 16 N -0.621 5.621 17 Si 0.957 3.043 18 H -0.217 1.217 19 H -0.206 1.206 20 H -0.197 1.197 21 C -0.122 4.122 22 C -0.155 4.155 23 C -0.167 4.167 24 C -0.117 4.117 25 H 0.056 0.944 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.139 0.861 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.020 0.980 36 H 0.212 0.788 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.135 0.865 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.146 0.854 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.103 -14.336 17.541 22.865 hybrid contribution 0.456 -0.140 0.718 0.862 sum -2.646 -14.476 18.259 23.450 Atomic orbital electron populations 1.20555 0.88249 1.03881 1.02032 1.20318 0.97080 0.89971 1.08585 1.18837 0.79180 0.85181 0.82447 1.90831 1.53064 1.67219 1.32881 1.48656 1.58371 1.20412 1.06959 1.22587 0.99763 1.00240 0.79977 1.22791 0.99744 0.93515 0.99274 1.22638 1.04417 0.99205 0.88919 1.21886 0.94354 0.82974 0.98492 0.93984 1.21120 0.95817 0.96330 0.84496 1.43081 1.58364 1.35762 1.03156 1.20424 1.25748 1.08504 0.92505 0.92298 1.27413 1.00951 1.04415 0.97517 1.70855 1.35339 1.18478 1.37448 0.82604 0.75014 0.72924 0.73727 1.21681 1.20623 1.19742 1.23387 0.98378 0.94898 0.95563 1.22342 0.93190 0.97745 1.02200 1.22614 0.97174 0.97179 0.99722 1.22238 0.98139 0.88270 1.03082 0.94393 0.88379 0.89844 0.90540 0.89128 0.86114 0.90039 0.88532 0.89309 0.95169 0.98045 0.78762 0.94629 0.94531 0.86484 0.87602 0.91240 0.85367 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.43 10.10 71.23 0.72 -1.71 16 2 C -0.16 -5.07 4.67 -18.70 -0.09 -5.15 16 3 C 0.55 23.50 6.94 86.57 0.60 24.10 16 4 O -0.56 -32.01 13.74 -4.07 -0.06 -32.07 16 5 N -0.61 -21.15 3.06 -792.28 -2.42 -23.57 16 6 C 0.10 2.04 6.66 86.86 0.58 2.62 16 7 C -0.12 -1.84 7.09 31.99 0.23 -1.61 16 8 C -0.11 -2.59 6.40 31.78 0.20 -2.39 16 9 C 0.13 4.70 3.03 45.34 0.14 4.84 16 10 H 0.04 1.80 8.08 -2.39 -0.02 1.78 16 11 C 0.15 7.13 5.60 86.38 0.48 7.62 16 12 N -0.75 -46.10 4.64 -343.45 -1.60 -47.69 16 13 C -0.34 -22.33 9.99 84.03 0.84 -21.49 16 14 H 0.06 3.72 7.83 -2.91 -0.02 3.69 16 15 C -0.11 -7.47 5.50 84.86 0.47 -7.00 16 16 N -0.97 -70.58 13.70 21.65 0.30 -70.28 16 17 Si 1.13 58.34 29.92 68.60 2.05 60.40 16 18 H -0.29 -15.07 7.11 99.48 0.71 -14.37 16 19 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 20 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 21 C -0.12 -3.17 6.67 -17.17 -0.11 -3.28 16 22 C -0.12 -2.83 7.83 30.06 0.24 -2.60 16 23 C -0.13 -2.35 8.17 30.93 0.25 -2.10 16 24 C -0.08 -1.32 7.45 30.16 0.22 -1.10 16 25 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 26 H 0.10 1.96 7.35 -2.39 -0.02 1.94 16 27 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.61 7.73 -2.39 -0.02 1.60 16 30 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.09 1.88 7.85 -2.39 -0.02 1.87 16 34 H 0.03 1.39 8.02 -2.39 -0.02 1.37 16 35 H 0.00 0.09 8.13 -2.39 -0.02 0.07 16 36 H 0.37 24.58 3.74 -92.71 -0.35 24.23 16 37 H 0.24 18.35 6.77 -92.71 -0.63 17.72 16 38 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.28 7.97 -2.39 -0.02 1.26 16 Total: -1.00 -93.80 345.51 3.82 -89.98 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 0.78 Total: 32.51 kcal Atomic # 6 Polarization: -14.04 SS G_CDS: 4.77 Total: -9.27 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -3.72 Total: -141.55 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.06 Total: -32.07 kcal Atomic # 14 Polarization: 58.34 SS G_CDS: 2.05 Total: 60.40 kcal Total: -93.80 3.82 -89.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267955543.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.996 kcal (2) G-P(sol) polarization free energy of solvation -93.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds