Wall clock time and date at job start Tue Mar 31 2020 00:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.53005 * 109.47038 * 239.99962 * 2 1 3 5 5 C 1.53004 * 109.47208 * 294.73590 * 4 2 1 6 6 H 1.08996 * 109.46833 * 54.17377 * 5 4 2 7 7 C 1.52996 * 109.46828 * 294.17360 * 5 4 2 8 8 N 1.46502 * 109.47173 * 184.99881 * 7 5 4 9 9 C 1.36935 * 120.00349 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99656 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99803 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99896 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47264 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47283 * 120.00143 * 13 11 9 16 16 H 1.48509 * 109.46927 * 239.99943 * 13 11 9 17 17 N 1.46495 * 109.46806 * 174.17855 * 5 4 2 18 18 C 1.34783 * 119.99963 * 272.43168 * 17 5 4 19 19 O 1.21622 * 119.99756 * 4.95394 * 18 17 5 20 20 C 1.43193 * 120.00113 * 184.95209 * 18 17 5 21 21 C 7.03091 * 91.48017 * 233.41250 * 2 1 3 22 22 C 8.47594 * 93.38913 * 234.24688 * 2 1 3 23 23 C 1.52993 * 117.49821 * 158.38299 * 22 21 20 24 24 C 1.53000 * 60.00159 * 252.50731 * 23 22 21 25 25 H 1.09000 * 109.47158 * 56.33731 * 1 2 3 26 26 H 1.09006 * 109.47238 * 176.33807 * 1 2 3 27 27 H 1.09001 * 109.46612 * 296.33934 * 1 2 3 28 28 H 1.08997 * 109.47105 * 120.00458 * 2 1 3 29 29 H 1.09008 * 109.46780 * 60.00206 * 3 2 1 30 30 H 1.09003 * 109.47063 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47422 * 300.00264 * 3 2 1 32 32 H 1.08998 * 109.46869 * 54.73040 * 4 2 1 33 33 H 1.08994 * 109.46951 * 174.73007 * 4 2 1 34 34 H 1.09003 * 109.47517 * 304.99981 * 7 5 4 35 35 H 1.09002 * 109.47204 * 65.00198 * 7 5 4 36 36 H 0.97001 * 119.99490 * 0.02562 * 8 7 5 37 37 H 0.96994 * 120.00161 * 179.97438 * 12 11 9 38 38 H 0.96998 * 120.00592 * 92.44253 * 17 5 4 39 39 H 1.09001 * 115.54545 * 304.08683 * 22 21 20 40 40 H 1.09008 * 117.49772 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50237 * 145.01987 * 23 22 21 42 42 H 1.09000 * 117.50169 * 252.51542 * 24 23 22 43 43 H 1.09003 * 117.50092 * 107.48240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6409 -2.1970 -1.1849 6 1 0.5646 -2.2759 -1.0325 7 6 2.3715 -2.8725 -0.0227 8 7 2.0829 -4.3088 -0.0333 9 6 2.6317 -5.1245 0.9199 10 1 3.2769 -4.7089 1.6798 11 6 2.3586 -6.4855 0.9096 12 7 1.5719 -6.9918 -0.0162 13 14 3.1067 -7.5980 2.2104 14 1 3.9470 -6.7894 3.1296 15 1 2.0220 -8.2571 2.9813 16 1 3.9462 -8.6323 1.5538 17 7 2.0061 -2.8568 -2.4408 18 6 1.1460 -2.8539 -3.4785 19 8 0.1059 -2.2280 -3.4044 20 6 1.4568 -3.5878 -4.6681 21 6 1.7116 -4.1894 -5.6436 22 6 2.0311 -4.9438 -6.8666 23 6 3.1842 -4.4314 -7.7317 24 6 1.7395 -4.2698 -8.2088 25 1 -0.3633 0.5696 -0.8553 26 1 -0.3634 -1.0256 -0.0656 27 1 -0.3632 0.4560 0.9210 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6016 -0.2648 -2.1367 33 1 3.1259 -0.6403 -1.2977 34 1 3.4451 -2.7169 -0.1287 35 1 2.0331 -2.4409 0.9193 36 1 1.5037 -4.6820 -0.7160 37 1 1.3814 -7.9428 -0.0237 38 1 2.8669 -3.2959 -2.5256 39 1 1.8894 -6.0227 -6.8038 40 1 3.7060 -3.5353 -7.3955 41 1 3.8015 -5.1731 -8.2383 42 1 1.4063 -4.9055 -9.0292 43 1 1.3110 -3.2678 -8.1862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268103532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:33 Heat of formation + Delta-G solvation = 32.961745 kcal Electronic energy + Delta-G solvation = -21220.972044 eV Core-core repulsion = 18075.190215 eV Total energy + Delta-G solvation = -3145.781830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.61765 -37.74431 -37.18161 -34.83350 -33.54791 -32.60374 -31.01536 -29.10093 -27.01113 -25.58163 -24.88690 -22.86852 -22.66478 -22.07196 -20.86168 -19.45302 -18.57212 -17.07557 -16.69000 -16.08079 -15.34818 -15.21358 -14.59897 -14.47301 -14.22789 -13.59567 -13.57628 -13.21929 -12.79961 -12.71701 -12.35343 -12.15085 -12.11932 -11.90820 -11.78814 -11.69533 -11.32885 -11.11331 -10.89346 -10.78583 -10.77024 -10.47599 -10.26826 -10.11811 -10.05599 -9.92384 -9.75773 -9.69113 -8.92665 -8.69466 -6.96437 -5.78439 -3.08508 1.75756 2.26630 3.27206 3.41729 3.47295 3.49668 3.70158 3.82606 4.23852 4.56269 4.57267 4.73135 4.89691 5.01379 5.04935 5.12085 5.34882 5.35979 5.48424 5.54047 5.56475 5.66863 5.75618 5.77507 5.81467 5.83109 5.85400 5.94288 6.02634 6.11759 6.19030 6.22333 6.35703 6.42807 6.51776 6.59668 6.71052 6.90277 7.35351 7.67817 7.78670 8.38952 8.42732 9.50914 10.06874 10.42023 11.43966 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005662 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.328277 B = 4944.307627 C = 7737.264517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.120 4.120 5 C 0.135 3.865 6 H 0.094 0.906 7 C 0.144 3.856 8 N -0.732 5.732 9 C -0.242 4.242 10 H 0.071 0.929 11 C -0.012 4.012 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.292 1.292 17 N -0.697 5.697 18 C 0.634 3.366 19 O -0.532 6.532 20 C -0.204 4.204 21 C -0.066 4.066 22 C -0.059 4.059 23 C -0.161 4.161 24 C -0.163 4.163 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.024 0.976 35 H 0.038 0.962 36 H 0.386 0.614 37 H 0.255 0.745 38 H 0.407 0.593 39 H 0.137 0.863 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.106 0.894 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 10.905 -11.291 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.201 4.201 4 C -0.159 4.159 5 C 0.031 3.969 6 H 0.112 0.888 7 C 0.016 3.984 8 N -0.377 5.377 9 C -0.373 4.373 10 H 0.089 0.911 11 C -0.208 4.208 12 N -0.579 5.579 13 Si 0.738 3.262 14 H -0.205 1.205 15 H -0.218 1.218 16 H -0.219 1.219 17 N -0.346 5.346 18 C 0.420 3.580 19 O -0.410 6.410 20 C -0.207 4.207 21 C -0.068 4.068 22 C -0.077 4.077 23 C -0.198 4.198 24 C -0.200 4.200 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.042 0.958 35 H 0.056 0.944 36 H 0.220 0.780 37 H 0.065 0.935 38 H 0.242 0.758 39 H 0.154 0.846 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.367 11.296 -11.039 15.971 hybrid contribution 0.581 -1.190 0.495 1.414 sum 2.948 10.105 -10.545 14.900 Atomic orbital electron populations 1.21888 0.95136 1.02466 1.01115 1.21129 0.96150 0.95796 0.98472 1.21823 1.00713 0.96218 1.01389 1.21980 1.00900 0.94647 0.98418 1.21455 1.01675 0.91050 0.82705 0.88769 1.21031 0.96520 0.86482 0.94341 1.42376 1.58859 1.01049 1.35415 1.19256 1.23061 0.89105 1.05908 0.91054 1.24755 1.00246 0.96926 0.98877 1.69682 1.40529 1.12272 1.35388 0.86124 0.78305 0.80834 0.80948 1.20527 1.21845 1.21890 1.45830 1.20087 1.56108 1.12599 1.14655 0.83480 0.79455 0.80401 1.90821 1.25155 1.43392 1.81630 1.20764 1.02851 1.01075 0.95982 1.21242 0.97236 0.94282 0.94073 1.18867 1.05474 0.98181 0.85157 1.23086 0.91311 1.03643 1.01725 1.23100 0.98775 1.02597 0.95553 0.92880 0.91948 0.93089 0.90374 0.92882 0.92877 0.92997 0.91560 0.91772 0.95810 0.94417 0.78026 0.93525 0.75786 0.84572 0.88209 0.87460 0.87530 0.88199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.04 37.16 0.34 -1.63 16 2 C -0.10 -1.23 2.80 -90.62 -0.25 -1.49 16 3 C -0.14 -1.54 9.19 37.16 0.34 -1.20 16 4 C -0.12 -1.69 4.45 -26.73 -0.12 -1.81 16 5 C 0.14 2.31 2.08 -67.93 -0.14 2.17 16 6 H 0.09 1.81 5.68 -51.93 -0.30 1.51 16 7 C 0.14 2.80 5.49 -4.04 -0.02 2.78 16 8 N -0.73 -18.27 5.43 -59.91 -0.33 -18.59 16 9 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 10 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 11 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 12 N -0.93 -28.23 13.06 55.49 0.72 -27.51 16 13 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 14 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 N -0.70 -12.02 4.48 -56.25 -0.25 -12.27 16 18 C 0.63 11.81 7.63 -14.33 -0.11 11.70 16 19 O -0.53 -11.22 16.76 5.26 0.09 -11.13 16 20 C -0.20 -3.50 13.62 -38.84 -0.53 -4.03 16 21 C -0.07 -0.98 13.47 -37.12 -0.50 -1.48 16 22 C -0.06 -0.63 6.22 -93.41 -0.58 -1.21 16 23 C -0.16 -1.32 10.21 -26.73 -0.27 -1.60 16 24 C -0.16 -1.36 10.21 -26.73 -0.27 -1.63 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.93 6.30 -51.93 -0.33 0.61 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.04 6.47 -51.93 -0.34 0.70 16 29 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.04 0.73 6.72 -51.93 -0.35 0.38 16 36 H 0.39 10.38 7.33 -40.82 -0.30 10.08 16 37 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.41 6.69 8.60 -40.82 -0.35 6.34 16 39 H 0.14 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.11 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -32.39 363.59 -8.68 -41.07 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.00 Total: 12.38 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -2.37 Total: -6.69 kcal Atomic # 7 Polarization: -58.51 SS G_CDS: 0.15 Total: -58.37 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.09 Total: -11.13 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.39 -8.68 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268103532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.030 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds