Wall clock time and date at job start Tue Mar 31 2020 00:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47287 * 2 1 4 4 C 1.53005 * 109.47038 * 239.99962 * 2 1 3 5 5 C 1.53004 * 109.47208 * 294.73590 * 4 2 1 6 6 H 1.08996 * 109.46833 * 54.17377 * 5 4 2 7 7 C 1.52996 * 109.46828 * 294.17360 * 5 4 2 8 8 N 1.46502 * 109.47173 * 184.99881 * 7 5 4 9 9 C 1.36935 * 120.00349 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99656 * 0.02562 * 9 8 7 11 11 C 1.38815 * 120.00233 * 180.02562 * 9 8 7 12 12 N 1.31618 * 119.99803 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99896 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47264 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.47283 * 120.00143 * 13 11 9 16 16 H 1.48509 * 109.46927 * 239.99943 * 13 11 9 17 17 N 1.46495 * 109.46806 * 174.17855 * 5 4 2 18 18 C 1.34783 * 119.99963 * 272.43168 * 17 5 4 19 19 O 1.21622 * 119.99756 * 4.95394 * 18 17 5 20 20 C 1.43193 * 120.00113 * 184.95209 * 18 17 5 21 21 C 7.03091 * 91.48017 * 233.41250 * 2 1 3 22 22 C 8.47594 * 93.38913 * 234.24688 * 2 1 3 23 23 C 1.52993 * 117.49821 * 158.38299 * 22 21 20 24 24 C 1.53000 * 60.00159 * 252.50731 * 23 22 21 25 25 H 1.09000 * 109.47158 * 56.33731 * 1 2 3 26 26 H 1.09006 * 109.47238 * 176.33807 * 1 2 3 27 27 H 1.09001 * 109.46612 * 296.33934 * 1 2 3 28 28 H 1.08997 * 109.47105 * 120.00458 * 2 1 3 29 29 H 1.09008 * 109.46780 * 60.00206 * 3 2 1 30 30 H 1.09003 * 109.47063 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47422 * 300.00264 * 3 2 1 32 32 H 1.08998 * 109.46869 * 54.73040 * 4 2 1 33 33 H 1.08994 * 109.46951 * 174.73007 * 4 2 1 34 34 H 1.09003 * 109.47517 * 304.99981 * 7 5 4 35 35 H 1.09002 * 109.47204 * 65.00198 * 7 5 4 36 36 H 0.97001 * 119.99490 * 0.02562 * 8 7 5 37 37 H 0.96994 * 120.00161 * 179.97438 * 12 11 9 38 38 H 0.96998 * 120.00592 * 92.44253 * 17 5 4 39 39 H 1.09001 * 115.54545 * 304.08683 * 22 21 20 40 40 H 1.09008 * 117.49772 * 359.97438 * 23 22 21 41 41 H 1.08996 * 117.50237 * 145.01987 * 23 22 21 42 42 H 1.09000 * 117.50169 * 252.51542 * 24 23 22 43 43 H 1.09003 * 117.50092 * 107.48240 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6409 -2.1970 -1.1849 6 1 0.5646 -2.2759 -1.0325 7 6 2.3715 -2.8725 -0.0227 8 7 2.0829 -4.3088 -0.0333 9 6 2.6317 -5.1245 0.9199 10 1 3.2769 -4.7089 1.6798 11 6 2.3586 -6.4855 0.9096 12 7 1.5719 -6.9918 -0.0162 13 14 3.1067 -7.5980 2.2104 14 1 3.9470 -6.7894 3.1296 15 1 2.0220 -8.2571 2.9813 16 1 3.9462 -8.6323 1.5538 17 7 2.0061 -2.8568 -2.4408 18 6 1.1460 -2.8539 -3.4785 19 8 0.1059 -2.2280 -3.4044 20 6 1.4568 -3.5878 -4.6681 21 6 1.7116 -4.1894 -5.6436 22 6 2.0311 -4.9438 -6.8666 23 6 3.1842 -4.4314 -7.7317 24 6 1.7395 -4.2698 -8.2088 25 1 -0.3633 0.5696 -0.8553 26 1 -0.3634 -1.0256 -0.0656 27 1 -0.3632 0.4560 0.9210 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6016 -0.2648 -2.1367 33 1 3.1259 -0.6403 -1.2977 34 1 3.4451 -2.7169 -0.1287 35 1 2.0331 -2.4409 0.9193 36 1 1.5037 -4.6820 -0.7160 37 1 1.3814 -7.9428 -0.0237 38 1 2.8669 -3.2959 -2.5256 39 1 1.8894 -6.0227 -6.8038 40 1 3.7060 -3.5353 -7.3955 41 1 3.8015 -5.1731 -8.2383 42 1 1.4063 -4.9055 -9.0292 43 1 1.3110 -3.2678 -8.1862 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268103532.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:32 Heat of formation + Delta-G solvation = 13.151139 kcal Electronic energy + Delta-G solvation = -21221.831097 eV Core-core repulsion = 18075.190215 eV Total energy + Delta-G solvation = -3146.640882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.06704 -38.65449 -38.42314 -36.37593 -35.22177 -33.86905 -32.87781 -30.58263 -28.00921 -27.24147 -26.09857 -24.55750 -23.39697 -23.29979 -22.17885 -20.66048 -19.99321 -19.03483 -17.74048 -17.45410 -16.86787 -16.31543 -16.04177 -15.77710 -15.57340 -15.33347 -15.06024 -14.56737 -14.26460 -13.91903 -13.54379 -13.44062 -13.16933 -13.11899 -12.94989 -12.80815 -12.67577 -12.42653 -12.29641 -12.20610 -12.03043 -11.95514 -11.79016 -11.65880 -11.47392 -11.29649 -11.11661 -10.96351 -10.70826 -10.12333 -9.03090 -7.95499 -5.25836 0.43010 1.08613 1.47544 1.48426 1.58543 1.98306 2.41445 2.55124 2.96778 3.11768 3.39279 3.68124 3.80751 3.84858 4.01562 4.03647 4.06337 4.16289 4.17762 4.35339 4.50197 4.55658 4.74667 4.74993 4.82066 4.88195 4.93072 4.95139 4.98320 5.04748 5.07291 5.10860 5.13078 5.20954 5.34430 5.42068 5.49290 5.50193 5.55390 6.12863 6.24854 6.35839 6.99229 7.31759 8.04536 8.28278 9.28138 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.008454 B = 0.005662 C = 0.003618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.328277 B = 4944.307627 C = 7737.264517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.139 4.139 4 C -0.109 4.109 5 C 0.143 3.857 6 H 0.069 0.931 7 C 0.147 3.853 8 N -0.745 5.745 9 C -0.243 4.243 10 H 0.082 0.918 11 C -0.075 4.075 12 N -0.971 5.971 13 Si 0.974 3.026 14 H -0.263 1.263 15 H -0.297 1.297 16 H -0.293 1.293 17 N -0.691 5.691 18 C 0.633 3.367 19 O -0.567 6.567 20 C -0.269 4.269 21 C -0.030 4.030 22 C -0.095 4.095 23 C -0.144 4.144 24 C -0.149 4.149 25 H 0.052 0.948 26 H 0.036 0.964 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.372 0.628 37 H 0.250 0.750 38 H 0.411 0.589 39 H 0.152 0.848 40 H 0.095 0.905 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.799 11.472 -11.825 17.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.196 4.196 4 C -0.148 4.148 5 C 0.038 3.962 6 H 0.087 0.913 7 C 0.021 3.979 8 N -0.388 5.388 9 C -0.374 4.374 10 H 0.100 0.900 11 C -0.267 4.267 12 N -0.622 5.622 13 Si 0.804 3.196 14 H -0.187 1.187 15 H -0.224 1.224 16 H -0.221 1.221 17 N -0.340 5.340 18 C 0.421 3.579 19 O -0.449 6.449 20 C -0.271 4.271 21 C -0.032 4.032 22 C -0.112 4.112 23 C -0.181 4.181 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.204 0.796 37 H 0.059 0.941 38 H 0.246 0.754 39 H 0.170 0.830 40 H 0.114 0.886 41 H 0.152 0.848 42 H 0.152 0.848 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.190 11.909 -11.552 17.112 hybrid contribution 0.040 -1.341 0.580 1.461 sum 4.230 10.569 -10.972 15.811 Atomic orbital electron populations 1.21875 0.95751 1.00954 1.01927 1.21138 0.95637 0.97256 0.97399 1.21774 1.01324 0.94371 1.02136 1.21899 1.01853 0.92099 0.98937 1.21358 0.99969 0.92878 0.81949 0.91250 1.21170 0.97471 0.83751 0.95552 1.42574 1.58515 1.03115 1.34616 1.19693 1.22139 0.89608 1.05971 0.90040 1.25586 1.01356 0.98570 1.01197 1.69852 1.42610 1.12146 1.37588 0.85059 0.77318 0.78755 0.78519 1.18676 1.22417 1.22059 1.45803 1.19982 1.55843 1.12363 1.14839 0.82974 0.79066 0.81014 1.90777 1.26496 1.45123 1.82474 1.20714 1.06086 1.03317 0.97031 1.22215 0.94624 0.92418 0.93952 1.19304 1.08801 0.98669 0.84473 1.23242 0.91262 1.03800 0.99791 1.23244 0.98773 1.02361 0.94192 0.92925 0.94507 0.91514 0.90652 0.91692 0.91860 0.92747 0.92263 0.90066 0.94216 0.93637 0.79628 0.94121 0.75361 0.83038 0.88612 0.84777 0.84798 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.04 71.98 0.65 -3.25 16 2 C -0.10 -2.33 2.80 -10.79 -0.03 -2.36 16 3 C -0.14 -2.66 9.19 71.98 0.66 -2.00 16 4 C -0.11 -3.01 4.45 30.60 0.14 -2.87 16 5 C 0.14 4.99 2.08 44.99 0.09 5.08 16 6 H 0.07 2.81 5.68 -2.39 -0.01 2.80 16 7 C 0.15 5.69 5.49 86.38 0.47 6.16 16 8 N -0.75 -37.67 5.43 -343.45 -1.87 -39.54 16 9 C -0.24 -13.35 9.99 84.03 0.84 -12.51 16 10 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 11 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 12 N -0.97 -60.21 13.06 21.65 0.28 -59.92 16 13 Si 0.97 45.94 29.55 68.60 2.03 47.97 16 14 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 15 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 16 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 17 N -0.69 -24.74 4.48 -450.12 -2.02 -26.76 16 18 C 0.63 24.91 7.63 85.48 0.65 25.57 16 19 O -0.57 -25.39 16.76 -4.10 -0.07 -25.46 16 20 C -0.27 -9.64 13.62 30.01 0.41 -9.23 16 21 C -0.03 -0.88 13.47 31.13 0.42 -0.46 16 22 C -0.09 -1.87 6.22 -12.60 -0.08 -1.95 16 23 C -0.14 -1.98 10.21 30.59 0.31 -1.67 16 24 C -0.15 -2.09 10.21 30.59 0.31 -1.78 16 25 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 26 H 0.04 1.14 6.30 -2.38 -0.02 1.13 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 28 H 0.08 1.90 6.47 -2.39 -0.02 1.88 16 29 H 0.06 1.10 8.14 -2.38 -0.02 1.09 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.05 1.73 6.72 -2.39 -0.02 1.71 16 36 H 0.37 20.70 7.33 -92.71 -0.68 20.02 16 37 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 38 H 0.41 13.91 8.60 -92.71 -0.80 13.11 16 39 H 0.15 2.56 8.14 -2.39 -0.02 2.54 16 40 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 41 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -71.41 363.59 3.21 -68.19 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.46 Total: 40.62 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.32 Total: -5.10 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -3.60 Total: -126.22 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.07 Total: -25.46 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -71.41 3.21 -68.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268103532.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.343 kcal (2) G-P(sol) polarization free energy of solvation -71.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds